Wall clock time and date at job start Tue Mar 31 2020 14:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47078 * 2 1 4 4 O 1.21276 * 120.00026 * 359.97438 * 3 2 1 5 5 N 1.34779 * 119.99935 * 179.97438 * 3 2 1 6 6 C 1.46889 * 125.58009 * 0.02562 * 5 3 2 7 7 C 1.54054 * 107.70411 * 182.96118 * 6 5 3 8 8 C 1.54059 * 103.74911 * 17.12728 * 7 6 5 9 9 H 1.09007 * 109.16290 * 85.81228 * 8 7 6 10 10 C 1.47654 * 125.58198 * 180.02562 * 5 3 2 11 11 H 1.09005 * 110.56226 * 38.37012 * 10 5 3 12 12 C 1.52929 * 107.99229 * 276.42801 * 10 5 3 13 13 C 1.52942 * 109.79106 * 188.16282 * 12 10 5 14 14 C 1.52731 * 108.59679 * 65.85656 * 13 12 10 15 15 N 1.44189 * 111.76501 * 206.74934 * 8 7 6 16 16 C 1.34779 * 117.75979 * 266.47013 * 15 8 7 17 17 O 1.21282 * 119.99922 * 0.02562 * 16 15 8 18 18 C 1.50699 * 120.00037 * 179.97438 * 16 15 8 19 19 S 1.81000 * 109.46881 * 180.02562 * 18 16 15 20 20 C 1.76206 * 99.99929 * 180.02562 * 19 18 16 21 21 H 1.07998 * 119.99720 * 359.97438 * 20 19 18 22 22 C 1.38796 * 119.99847 * 180.02562 * 20 19 18 23 23 N 1.31625 * 120.00398 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99778 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47405 * 89.99756 * 24 22 20 26 26 H 1.48503 * 109.46936 * 210.00169 * 24 22 20 27 27 H 1.48506 * 109.47119 * 329.99794 * 24 22 20 28 28 H 1.08999 * 109.47207 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47344 * 300.00484 * 1 2 3 30 30 H 1.09008 * 109.46963 * 60.00411 * 1 2 3 31 31 H 1.08999 * 109.47344 * 239.99516 * 2 1 3 32 32 H 1.09000 * 109.46730 * 119.99850 * 2 1 3 33 33 H 1.09004 * 109.80695 * 63.41412 * 6 5 3 34 34 H 1.08997 * 109.86423 * 302.54711 * 6 5 3 35 35 H 1.08995 * 110.57155 * 258.55712 * 7 6 5 36 36 H 1.09004 * 110.56348 * 135.69508 * 7 6 5 37 37 H 1.08994 * 109.41608 * 308.25906 * 12 10 5 38 38 H 1.09000 * 109.41811 * 68.06085 * 12 10 5 39 39 H 1.09002 * 109.63663 * 185.69690 * 13 12 10 40 40 H 1.09004 * 109.63536 * 306.29081 * 13 12 10 41 41 H 1.08997 * 109.46381 * 186.32634 * 14 13 12 42 42 H 1.09001 * 109.27273 * 66.48426 * 14 13 12 43 43 H 1.09000 * 109.47247 * 60.00371 * 18 16 15 44 44 H 1.09001 * 109.47358 * 299.99798 * 18 16 15 45 45 H 0.96996 * 120.00393 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6671 0.0005 6 6 4.4160 0.6487 0.0006 7 6 5.7697 1.3801 0.0771 8 6 5.3948 2.7949 0.5579 9 1 5.3437 2.8009 1.6468 10 6 3.9827 3.0047 0.0011 11 1 3.4197 3.6902 0.6347 12 6 4.0357 3.5020 -1.4441 13 6 4.8558 4.7908 -1.5185 14 6 6.3051 4.4672 -1.1617 15 7 6.3540 3.7794 0.1222 16 6 7.3617 4.0886 0.9621 17 8 7.4391 3.5439 2.0429 18 6 8.3929 5.1104 0.5577 19 16 9.6053 5.3031 1.8878 20 6 10.6583 6.5189 1.1682 21 1 10.4437 6.9038 0.1822 22 6 11.7642 6.9809 1.8681 23 7 12.0262 6.5114 3.0695 24 14 12.8802 8.2704 1.1055 25 1 12.3936 9.6249 1.4710 26 1 14.2645 8.0885 1.6114 27 1 12.8698 8.1226 -0.3721 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 4.3643 0.0622 -0.9167 34 1 4.3002 -0.0057 0.8645 35 1 6.2387 1.4214 -0.9059 36 1 6.4280 0.8929 0.7964 37 1 4.4987 2.7412 -2.0723 38 1 3.0231 3.6958 -1.7980 39 1 4.8082 5.1975 -2.5287 40 1 4.4606 5.5179 -0.8090 41 1 6.8792 5.3917 -1.1004 42 1 6.7311 3.8260 -1.9334 43 1 7.9035 6.0662 0.3705 44 1 8.8985 4.7774 -0.3488 45 1 12.7988 6.8346 3.5588 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001056246444.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:24 Heat of formation + Delta-G solvation = -71.736450 kcal Electronic energy + Delta-G solvation = -25963.561855 eV Core-core repulsion = 22299.946266 eV Total energy + Delta-G solvation = -3663.615589 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.23699 -39.61945 -37.87860 -35.87486 -33.28941 -33.01731 -32.45306 -31.51547 -29.71469 -28.83154 -25.56654 -25.32965 -24.94852 -23.03152 -22.47744 -20.94165 -19.40549 -18.60438 -17.77609 -17.50458 -16.99081 -16.37835 -15.93737 -15.50695 -15.32102 -14.93859 -14.82309 -14.41123 -14.17293 -13.95040 -13.74718 -13.41444 -13.32667 -13.13837 -12.83439 -12.66637 -12.56179 -12.30244 -12.08109 -11.97109 -11.82340 -11.67766 -11.51701 -11.27140 -11.08412 -11.05256 -10.98669 -10.77946 -10.60598 -10.06414 -9.83063 -9.43405 -9.09031 -8.96766 -8.59853 -8.25784 -6.53398 -6.24096 -3.95085 2.36235 2.49052 2.93418 2.96410 3.20691 3.24320 3.28539 3.54302 4.06843 4.17549 4.25047 4.47528 4.54394 4.65338 4.68926 4.72212 4.74736 4.81230 4.92195 4.95857 5.09284 5.11216 5.19981 5.25892 5.34747 5.39183 5.44613 5.48221 5.55859 5.59553 5.64435 5.70395 5.75514 5.81520 5.85615 5.87802 5.95576 5.97436 6.07123 6.11114 6.69911 7.20267 7.39305 7.57162 7.89135 8.32607 8.46074 9.21289 10.83284 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.033180 B = 0.002491 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.677906 B =11238.985310 C =11673.587120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.140 4.140 3 C 0.528 3.472 4 O -0.539 6.539 5 N -0.616 5.616 6 C 0.103 3.897 7 C -0.143 4.143 8 C 0.143 3.857 9 H 0.102 0.898 10 C 0.136 3.864 11 H 0.094 0.906 12 C -0.124 4.124 13 C -0.131 4.131 14 C 0.107 3.893 15 N -0.602 5.602 16 C 0.530 3.470 17 O -0.512 6.512 18 C -0.151 4.151 19 S -0.061 6.061 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.064 0.936 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.412 -12.622 -11.466 25.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.180 4.180 3 C 0.318 3.682 4 O -0.416 6.416 5 N -0.351 5.351 6 C -0.020 4.020 7 C -0.182 4.182 8 C 0.037 3.963 9 H 0.120 0.880 10 C 0.032 3.968 11 H 0.112 0.888 12 C -0.163 4.163 13 C -0.170 4.170 14 C -0.016 4.016 15 N -0.337 5.337 16 C 0.318 3.682 17 O -0.385 6.385 18 C -0.301 4.301 19 S 0.165 5.835 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.109 0.891 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.112 0.888 42 H 0.082 0.918 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.709 -12.972 -9.711 24.751 hybrid contribution 0.770 1.367 -1.820 2.403 sum -17.939 -11.605 -11.531 24.278 Atomic orbital electron populations 1.21541 0.92923 1.01615 1.03404 1.21621 0.98542 0.93461 1.04328 1.20486 0.80138 0.91995 0.75620 1.90712 1.54263 1.46750 1.49851 1.48633 1.05228 1.07584 1.73658 1.21962 0.86754 0.91290 1.01981 1.22819 0.96128 0.95926 1.03347 1.20753 0.87090 0.87572 1.00916 0.87970 1.21668 0.92779 0.84997 0.97388 0.88825 1.21788 1.01069 0.97592 0.95853 1.21759 0.94762 0.97678 1.02768 1.21497 0.97478 0.97864 0.84775 1.46957 1.27056 1.41556 1.18120 1.20492 0.81398 0.82557 0.83790 1.90695 1.73836 1.52244 1.21748 1.23587 1.00208 0.99531 1.06794 1.85414 1.24826 1.54278 1.18932 1.22848 1.13236 1.26718 1.05525 0.90911 1.24991 0.96937 0.96844 0.94805 1.70010 1.27585 1.41547 1.11098 0.86171 0.79288 0.80822 0.79239 1.20256 1.20755 1.19683 0.92015 0.91923 0.92001 0.88994 0.88867 0.91154 0.90879 0.90170 0.89058 0.91402 0.91087 0.89933 0.90865 0.88845 0.91788 0.89061 0.89105 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.20 37.16 0.34 -0.63 16 2 C -0.14 -0.95 5.61 -27.88 -0.16 -1.11 16 3 C 0.53 5.63 7.84 -10.98 -0.09 5.55 16 4 O -0.54 -7.80 16.26 5.56 0.09 -7.71 16 5 N -0.62 -6.05 2.87 -164.19 -0.47 -6.52 16 6 C 0.10 0.78 6.48 -3.28 -0.02 0.75 16 7 C -0.14 -1.37 6.45 -25.63 -0.17 -1.54 16 8 C 0.14 1.73 2.72 -68.49 -0.19 1.54 16 9 H 0.10 1.48 7.10 -51.92 -0.37 1.11 16 10 C 0.14 1.49 2.95 -67.21 -0.20 1.29 16 11 H 0.09 1.20 8.07 -51.93 -0.42 0.78 16 12 C -0.12 -1.19 5.31 -26.80 -0.14 -1.33 16 13 C -0.13 -1.17 6.09 -26.90 -0.16 -1.34 16 14 C 0.11 1.11 6.04 -4.59 -0.03 1.08 16 15 N -0.60 -8.06 2.80 -167.77 -0.47 -8.53 16 16 C 0.53 9.56 7.60 -10.99 -0.08 9.48 16 17 O -0.51 -11.13 15.14 5.56 0.08 -11.04 16 18 C -0.15 -2.93 4.49 36.01 0.16 -2.77 16 19 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 20 C -0.54 -14.94 9.50 30.94 0.29 -14.65 16 21 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 22 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 23 N -0.87 -25.85 13.22 55.49 0.73 -25.12 16 24 Si 0.92 21.12 29.55 -169.99 -5.02 16.09 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 30 H 0.06 0.49 8.10 -51.92 -0.42 0.07 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.61 8.02 -51.93 -0.42 0.19 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.09 0.99 5.82 -51.93 -0.30 0.69 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.09 1.64 7.31 -51.92 -0.38 1.26 16 44 H 0.09 1.62 8.04 -51.91 -0.42 1.21 16 45 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 373.73 15.07 5.63 5.63 Total: -1.00 -34.90 373.73 -9.50 -44.40 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -7.34 Total: -1.68 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -0.53 Total: -1.69 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: -0.21 Total: -40.17 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: 0.17 Total: -18.75 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.90 -9.50 -44.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001056246444.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.335 kcal (2) G-P(sol) polarization free energy of solvation -34.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds