Wall clock time and date at job start Tue Mar 31 2020 14:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 109.46747 * 2 1 4 4 O 1.21284 * 120.00301 * 359.97438 * 3 2 1 5 5 N 1.34780 * 119.99946 * 179.97438 * 3 2 1 6 6 C 1.44221 * 115.72336 * 0.02562 * 5 3 2 7 7 C 1.52159 * 113.23438 * 181.78883 * 6 5 3 8 8 C 1.52851 * 109.72434 * 33.32522 * 7 6 5 9 9 C 1.51826 * 108.67261 * 294.63787 * 8 7 6 10 10 H 1.08995 * 109.93293 * 184.24538 * 9 8 7 11 11 C 1.54250 * 109.94515 * 307.32595 * 9 8 7 12 12 N 1.46929 * 106.14021 * 147.91362 * 11 9 8 13 13 C 1.34776 * 125.37605 * 161.64277 * 12 11 9 14 14 O 1.21282 * 119.99940 * 359.72525 * 13 12 11 15 15 C 1.50698 * 120.00035 * 179.71640 * 13 12 11 16 16 S 1.81000 * 109.47349 * 180.02562 * 15 13 12 17 17 C 1.76194 * 100.00068 * 180.02562 * 16 15 13 18 18 H 1.08006 * 120.00457 * 359.97438 * 17 16 15 19 19 C 1.38801 * 120.00163 * 180.02562 * 17 16 15 20 20 N 1.31640 * 119.99650 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 120.00461 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47169 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47142 * 119.99526 * 21 19 17 24 24 H 1.48498 * 109.47657 * 239.99984 * 21 19 17 25 25 C 1.46795 * 109.24993 * 341.38187 * 12 11 9 26 26 C 1.44170 * 115.72634 * 179.97438 * 5 3 2 27 27 H 1.08996 * 109.63717 * 51.44438 * 26 5 3 28 28 H 1.08997 * 109.47771 * 300.00407 * 1 2 3 29 29 H 1.09001 * 109.46879 * 60.00581 * 1 2 3 30 30 H 1.09006 * 109.47034 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47191 * 239.99937 * 2 1 3 32 32 H 1.09001 * 109.46879 * 119.99418 * 2 1 3 33 33 H 1.08997 * 108.72628 * 302.75280 * 6 5 3 34 34 H 1.08998 * 108.73059 * 60.94006 * 6 5 3 35 35 H 1.08997 * 109.43054 * 153.40649 * 7 6 5 36 36 H 1.09006 * 109.42516 * 273.24696 * 7 6 5 37 37 H 1.08999 * 109.54436 * 54.60806 * 8 7 6 38 38 H 1.09000 * 109.54696 * 174.87969 * 8 7 6 39 39 H 1.09003 * 110.25389 * 28.68943 * 11 9 8 40 40 H 1.08997 * 110.04305 * 267.01821 * 11 9 8 41 41 H 1.09001 * 109.47122 * 60.00223 * 15 13 12 42 42 H 1.09004 * 109.47371 * 300.00514 * 15 13 12 43 43 H 0.97001 * 119.99781 * 180.02562 * 20 19 17 44 44 H 1.08995 * 109.83012 * 120.14402 * 25 12 11 45 45 H 1.09001 * 109.83009 * 241.11140 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3426 -0.0005 5 7 3.3574 1.6672 0.0005 6 6 4.2103 0.5042 0.0005 7 6 5.6922 0.8466 0.0447 8 6 5.9034 2.1190 0.8649 9 6 5.2458 3.2795 0.1396 10 1 5.4481 4.2108 0.6685 11 6 5.7441 3.3388 -1.3190 12 7 4.6231 3.8604 -2.1127 13 6 4.7223 4.3947 -3.3460 14 8 5.8053 4.4781 -3.8854 15 6 3.4875 4.8885 -4.0549 16 16 3.9453 5.5439 -5.6787 17 6 2.3595 6.0362 -6.2681 18 1 1.4847 5.8889 -5.6521 19 6 2.2343 6.6125 -7.5247 20 7 3.3005 6.7916 -8.2757 21 14 0.5532 7.1338 -8.1499 22 1 -0.4743 6.8258 -7.1229 23 1 0.5577 8.5933 -8.4241 24 1 0.2393 6.3962 -9.4000 25 6 3.3770 3.7019 -1.3530 26 6 3.7352 3.0585 -0.0001 27 1 3.2134 3.5801 0.8021 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.9666 -0.1085 0.8684 34 1 4.0133 -0.0743 -0.9021 35 1 6.2408 0.0242 0.5037 36 1 6.0583 1.0041 -0.9699 37 1 5.4536 1.9966 1.8501 38 1 6.9710 2.3114 0.9713 39 1 6.0166 2.3418 -1.6654 40 1 6.6003 4.0091 -1.3943 41 1 3.0194 5.6756 -3.4637 42 1 2.7864 4.0633 -4.1810 43 1 3.2131 7.1946 -9.1537 44 1 2.9175 4.6765 -1.1889 45 1 2.6904 3.0554 -1.8994 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001056572065.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:43 Heat of formation + Delta-G solvation = -64.016854 kcal Electronic energy + Delta-G solvation = -26300.972977 eV Core-core repulsion = 22637.692135 eV Total energy + Delta-G solvation = -3663.280842 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.57394 -39.38666 -38.06852 -35.73142 -33.88973 -33.13902 -32.39746 -31.47741 -29.45559 -28.12422 -25.99134 -25.39860 -25.02092 -23.73425 -22.49226 -20.23258 -19.39177 -18.68318 -17.73600 -17.54448 -16.70794 -16.64332 -16.15098 -15.70835 -15.04196 -14.81196 -14.76518 -14.72980 -14.33232 -14.10771 -13.90878 -13.57594 -13.27429 -12.94376 -12.71830 -12.63425 -12.47478 -12.29672 -12.12508 -11.95305 -11.89848 -11.54495 -11.39111 -11.16836 -11.08181 -11.03759 -10.97790 -10.85099 -10.72107 -9.98788 -9.77587 -9.44135 -9.04295 -8.92176 -8.43031 -8.20395 -6.47262 -6.18893 -3.89167 2.34860 2.64660 2.95931 3.07853 3.24241 3.29349 3.34664 3.65489 3.89637 4.18610 4.23682 4.26026 4.37346 4.40163 4.53789 4.75118 4.77300 4.85421 4.95411 5.06964 5.07791 5.12319 5.16166 5.17874 5.23958 5.34897 5.47651 5.51276 5.54273 5.59231 5.66535 5.67391 5.69906 5.73583 5.79201 5.91492 5.98538 5.98636 6.20047 6.41127 6.46572 6.96875 7.63426 7.66906 7.91130 8.39143 8.57106 9.26764 10.88659 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.014218 B = 0.003311 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.917093 B = 8455.250084 C = 9937.153603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.144 4.144 3 C 0.499 3.501 4 O -0.530 6.530 5 N -0.597 5.597 6 C 0.116 3.884 7 C -0.140 4.140 8 C -0.108 4.108 9 C -0.104 4.104 10 H 0.100 0.900 11 C 0.106 3.894 12 N -0.623 5.623 13 C 0.549 3.451 14 O -0.516 6.516 15 C -0.146 4.146 16 S -0.061 6.061 17 C -0.533 4.533 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.099 3.901 26 C 0.150 3.850 27 H 0.097 0.903 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.267 0.733 44 H 0.078 0.922 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.705 -16.298 23.413 28.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.184 4.184 3 C 0.288 3.712 4 O -0.406 6.406 5 N -0.330 5.330 6 C -0.007 4.007 7 C -0.178 4.178 8 C -0.146 4.146 9 C -0.123 4.123 10 H 0.118 0.882 11 C -0.017 4.017 12 N -0.361 5.361 13 C 0.338 3.662 14 O -0.390 6.390 15 C -0.297 4.297 16 S 0.166 5.834 17 C -0.682 4.682 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.504 5.504 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.206 1.206 25 C -0.026 4.026 26 C 0.046 3.954 27 H 0.115 0.885 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.077 0.923 44 H 0.096 0.904 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.032 -15.567 22.350 27.405 hybrid contribution -2.300 0.169 0.190 2.314 sum 0.732 -15.398 22.540 27.307 Atomic orbital electron populations 1.21550 0.92966 1.01598 1.03514 1.21717 0.98748 0.93756 1.04152 1.20993 0.82079 0.92208 0.75951 1.90733 1.55030 1.46457 1.48353 1.46836 1.06574 1.05625 1.74014 1.20897 0.91280 0.86660 1.01849 1.21786 0.94806 0.98769 1.02409 1.21118 1.01321 0.93449 0.98697 1.21903 0.93258 1.00635 0.96516 0.88223 1.22190 0.90850 0.99974 0.88660 1.48331 1.08223 1.62898 1.16648 1.20018 0.90925 0.76276 0.79008 1.90702 1.29107 1.54811 1.64428 1.23506 0.97973 1.03820 1.04367 1.85336 1.13193 1.77757 1.07159 1.22914 0.93545 1.46895 1.04811 0.90868 1.24989 0.97879 0.95083 0.95610 1.70037 1.28478 1.41394 1.10462 0.86117 0.82358 0.78327 0.78720 1.19564 1.20541 1.20565 1.22378 0.87192 1.01409 0.91618 1.20955 0.95683 0.81270 0.97523 0.88492 0.92020 0.91773 0.92118 0.88818 0.88988 0.91456 0.91581 0.89946 0.90004 0.90932 0.90458 0.90915 0.90450 0.89270 0.89444 0.92274 0.90387 0.90902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.20 37.16 0.34 -0.74 16 2 C -0.14 -0.99 5.04 -27.88 -0.14 -1.14 16 3 C 0.50 5.14 6.86 -10.99 -0.08 5.07 16 4 O -0.53 -7.47 14.66 5.55 0.08 -7.39 16 5 N -0.60 -5.29 2.86 -169.28 -0.48 -5.77 16 6 C 0.12 0.69 5.19 -5.68 -0.03 0.66 16 7 C -0.14 -0.76 5.80 -27.24 -0.16 -0.92 16 8 C -0.11 -0.62 5.50 -27.40 -0.15 -0.77 16 9 C -0.10 -0.87 3.38 -90.41 -0.31 -1.17 16 10 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 11 C 0.11 1.25 6.20 -3.15 -0.02 1.23 16 12 N -0.62 -9.58 3.32 -171.70 -0.57 -10.15 16 13 C 0.55 11.15 7.86 -10.99 -0.09 11.07 16 14 O -0.52 -12.28 16.15 5.56 0.09 -12.19 16 15 C -0.15 -3.21 5.33 36.00 0.19 -3.02 16 16 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 17 C -0.53 -15.68 9.50 30.94 0.29 -15.39 16 18 H 0.07 2.07 7.80 -52.48 -0.41 1.66 16 19 C 0.07 2.14 5.49 -17.43 -0.10 2.05 16 20 N -0.87 -26.64 13.22 55.49 0.73 -25.91 16 21 Si 0.92 21.95 29.55 -169.99 -5.02 16.93 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 C 0.10 1.31 5.54 -3.34 -0.02 1.29 16 26 C 0.15 1.51 2.74 -68.48 -0.19 1.32 16 27 H 0.10 0.98 7.86 -51.93 -0.41 0.57 16 28 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 29 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.54 7.53 -51.93 -0.39 0.15 16 32 H 0.09 0.42 7.43 -51.93 -0.39 0.04 16 33 H 0.07 0.27 7.27 -51.93 -0.38 -0.11 16 34 H 0.07 0.38 7.48 -51.93 -0.39 -0.01 16 35 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.08 0.56 5.44 -51.93 -0.28 0.28 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.83 5.11 -51.93 -0.27 0.56 16 40 H 0.08 0.98 8.11 -51.93 -0.42 0.56 16 41 H 0.09 1.85 8.14 -51.92 -0.42 1.43 16 42 H 0.09 1.84 8.14 -51.91 -0.42 1.42 16 43 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.07 1.08 7.07 -51.93 -0.37 0.71 16 LS Contribution 366.05 15.07 5.52 5.52 Total: -1.00 -36.72 366.05 -9.36 -46.09 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -7.05 Total: -2.73 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -0.44 Total: -0.47 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: -0.32 Total: -41.83 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: 0.17 Total: -19.58 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.72 -9.36 -46.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001056572065.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.931 kcal (2) G-P(sol) polarization free energy of solvation -36.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds