Wall clock time and date at job start Tue Mar 31 2020 14:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 O 1.21279 * 119.99507 * 0.02562 * 3 2 1 5 5 N 1.34774 * 120.00020 * 180.02562 * 3 2 1 6 6 C 1.46935 * 125.36943 * 179.71988 * 5 3 2 7 7 C 1.54251 * 106.13182 * 161.65098 * 6 5 3 8 8 H 1.09005 * 111.47497 * 270.09770 * 7 6 5 9 9 C 1.52437 * 109.72718 * 147.42878 * 7 6 5 10 10 C 1.52860 * 109.02561 * 307.12397 * 9 7 6 11 11 C 1.52157 * 109.72160 * 294.74618 * 10 9 7 12 12 N 1.43467 * 113.00502 * 33.45904 * 11 10 9 13 13 C 1.34772 * 115.09723 * 181.62065 * 12 11 10 14 14 O 1.21280 * 120.00140 * 179.86714 * 13 12 11 15 15 C 1.50705 * 119.99913 * 359.87353 * 13 12 11 16 16 S 1.81005 * 109.46919 * 179.97438 * 15 13 12 17 17 C 1.76197 * 99.99708 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00298 * 359.97438 * 17 16 15 19 19 C 1.38801 * 119.99786 * 180.02562 * 17 16 15 20 20 N 1.31630 * 119.99956 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 119.99975 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.47360 * 90.00315 * 21 19 17 23 23 H 1.48506 * 109.46983 * 210.00148 * 21 19 17 24 24 H 1.48495 * 109.47477 * 329.99950 * 21 19 17 25 25 C 1.44175 * 129.17774 * 1.47050 * 12 11 10 26 26 H 1.09002 * 109.63930 * 231.57171 * 25 12 11 27 27 C 1.46785 * 125.37414 * 0.02735 * 5 3 2 28 28 H 1.09004 * 109.47261 * 59.99705 * 1 2 3 29 29 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99686 * 1 2 3 31 31 H 1.09001 * 109.46832 * 240.00314 * 2 1 3 32 32 H 1.09000 * 109.47611 * 120.00611 * 2 1 3 33 33 H 1.08993 * 110.10300 * 280.97239 * 6 5 3 34 34 H 1.09002 * 110.10152 * 42.59173 * 6 5 3 35 35 H 1.09001 * 109.54267 * 66.98792 * 9 7 6 36 36 H 1.08999 * 109.54663 * 187.25808 * 9 7 6 37 37 H 1.09002 * 109.42766 * 54.82533 * 10 9 7 38 38 H 1.09006 * 109.42774 * 174.72177 * 10 9 7 39 39 H 1.08991 * 108.73011 * 154.26445 * 11 10 9 40 40 H 1.08997 * 108.72970 * 272.32569 * 11 10 9 41 41 H 1.09001 * 109.47039 * 299.98937 * 15 13 12 42 42 H 1.08991 * 109.47267 * 59.99524 * 15 13 12 43 43 H 0.97003 * 120.00224 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.82822 * 299.85598 * 27 5 3 45 45 H 1.08998 * 109.82999 * 60.82229 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.9747 3.0005 -0.0064 7 6 5.4308 2.8007 0.4617 8 1 5.5170 2.8860 1.5449 9 6 6.3363 3.8161 -0.2260 10 6 6.1192 3.7345 -1.7369 11 6 6.5794 2.3776 -2.2492 12 7 6.3667 1.3198 -1.3036 13 6 6.7909 0.1039 -1.7011 14 8 6.6572 -0.8541 -0.9695 15 6 7.4316 -0.0653 -3.0547 16 16 7.8902 -1.8001 -3.2925 17 6 8.5939 -1.7121 -4.9054 18 1 8.6345 -0.7667 -5.4261 19 6 9.0952 -2.8579 -5.5073 20 7 9.6206 -2.7923 -6.7124 21 14 9.0244 -4.4931 -4.6070 22 1 7.7488 -5.1813 -4.9302 23 1 10.1664 -5.3421 -5.0321 24 1 9.1019 -4.2561 -3.1432 25 6 5.7683 1.3762 0.0069 26 1 6.4321 0.9073 0.7333 27 6 4.4116 0.6457 -0.0017 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.9558 3.4176 -1.0132 34 1 3.4479 3.6603 0.6830 35 1 6.0913 4.8190 0.1239 36 1 7.3775 3.5919 0.0055 37 1 5.0601 3.8657 -1.9587 38 1 6.6927 4.5203 -2.2286 39 1 6.0331 2.1449 -3.1631 40 1 7.6421 2.4344 -2.4845 41 1 6.7266 0.2340 -3.8303 42 1 8.3240 0.5576 -3.1147 43 1 9.9713 -3.5930 -7.1329 44 1 4.3223 0.0212 0.8873 45 1 4.3288 0.0299 -0.8973 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001056606492.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:27 Heat of formation + Delta-G solvation = -65.106443 kcal Electronic energy + Delta-G solvation = -26375.667173 eV Core-core repulsion = 22712.339082 eV Total energy + Delta-G solvation = -3663.328090 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.49717 -39.64332 -38.07407 -35.88454 -33.77164 -32.90765 -32.47608 -31.80914 -29.59969 -27.95132 -26.67453 -25.65372 -24.49773 -23.25212 -22.91759 -20.41458 -19.39710 -18.65258 -17.90841 -17.34123 -16.98230 -16.46216 -16.09523 -15.88108 -15.44018 -15.01967 -14.98752 -14.47647 -14.23226 -14.06685 -13.85109 -13.42486 -13.32681 -13.03538 -12.87672 -12.81770 -12.56173 -12.45824 -12.15327 -12.01423 -11.85103 -11.56570 -11.36147 -11.30402 -11.10743 -11.06154 -11.04460 -10.84679 -10.63738 -10.03952 -9.89487 -9.57885 -9.04119 -8.85698 -8.63389 -8.54573 -6.96929 -6.32613 -4.04918 2.45642 2.60986 2.75182 2.80363 3.12458 3.29709 3.46458 3.53720 3.90012 4.12542 4.29167 4.34070 4.45420 4.55592 4.60766 4.63968 4.82359 4.87634 4.91123 4.99700 5.00811 5.06357 5.13182 5.18473 5.27695 5.30468 5.36760 5.53180 5.54516 5.60086 5.62263 5.65492 5.68326 5.72794 5.74864 5.78571 5.93706 5.96536 5.98558 6.08237 6.67492 7.22522 7.26553 7.90319 7.97299 8.29321 8.37841 9.13464 10.76630 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.014664 B = 0.003414 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.975473 B = 8199.752625 C = 9389.149944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.142 4.142 3 C 0.528 3.472 4 O -0.546 6.546 5 N -0.617 5.617 6 C 0.103 3.897 7 C -0.103 4.103 8 H 0.099 0.901 9 C -0.109 4.109 10 C -0.137 4.137 11 C 0.114 3.886 12 N -0.600 5.600 13 C 0.520 3.480 14 O -0.513 6.513 15 C -0.123 4.123 16 S -0.143 6.143 17 C -0.521 4.521 18 H 0.088 0.912 19 C 0.096 3.904 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.154 3.846 26 H 0.099 0.901 27 C 0.092 3.908 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.271 0.729 44 H 0.079 0.921 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.361 12.965 14.851 22.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.182 4.182 3 C 0.318 3.682 4 O -0.423 6.423 5 N -0.352 5.352 6 C -0.019 4.019 7 C -0.122 4.122 8 H 0.118 0.882 9 C -0.147 4.147 10 C -0.174 4.174 11 C -0.009 4.009 12 N -0.335 5.335 13 C 0.308 3.692 14 O -0.388 6.388 15 C -0.273 4.273 16 S 0.083 5.917 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.516 5.516 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C 0.049 3.951 26 H 0.117 0.883 27 C -0.032 4.032 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.081 0.919 44 H 0.098 0.902 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.996 11.991 15.791 22.673 hybrid contribution 0.418 0.299 -0.913 1.048 sum -10.578 12.290 14.878 22.006 Atomic orbital electron populations 1.21529 0.92939 1.01683 1.03166 1.21638 0.98491 0.93420 1.04662 1.20502 0.80159 0.92038 0.75513 1.90687 1.54363 1.46842 1.50433 1.48392 1.05359 1.07872 1.73568 1.22270 0.91881 0.85489 1.02246 1.22020 0.94638 0.94141 1.01400 0.88245 1.21233 0.99915 0.98673 0.94876 1.21758 1.02761 0.96586 0.96288 1.20782 1.01616 0.87093 0.91424 1.46574 1.61444 1.09069 1.16459 1.20506 0.77716 0.82418 0.88572 1.90692 1.54516 1.38705 1.54838 1.23380 1.03322 1.04660 0.95974 1.84763 1.78568 1.04305 1.24040 1.22297 1.45415 0.99647 0.99544 0.89402 1.24713 0.93359 0.98899 0.94305 1.69936 1.38204 1.30001 1.13497 0.86737 0.78744 0.83640 0.82734 1.19217 1.19933 1.15925 1.20870 0.93407 0.95610 0.85163 0.88300 1.22570 0.86285 0.91014 1.03323 0.92025 0.91933 0.92112 0.88715 0.88876 0.90495 0.90574 0.90678 0.90586 0.90574 0.89858 0.91501 0.91065 0.88505 0.88369 0.91907 0.90240 0.90183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.20 37.16 0.34 -0.91 16 2 C -0.14 -1.37 5.59 -27.88 -0.16 -1.53 16 3 C 0.53 6.52 7.84 -10.98 -0.09 6.44 16 4 O -0.55 -8.45 16.27 5.56 0.09 -8.36 16 5 N -0.62 -6.81 3.32 -171.66 -0.57 -7.38 16 6 C 0.10 0.97 6.20 -3.15 -0.02 0.95 16 7 C -0.10 -0.80 3.44 -90.10 -0.31 -1.11 16 8 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 9 C -0.11 -0.71 5.49 -27.09 -0.15 -0.86 16 10 C -0.14 -0.98 5.81 -27.23 -0.16 -1.13 16 11 C 0.11 1.11 5.14 -6.08 -0.03 1.08 16 12 N -0.60 -7.17 2.85 -169.81 -0.48 -7.65 16 13 C 0.52 8.45 6.87 -10.99 -0.08 8.37 16 14 O -0.51 -9.82 14.54 5.56 0.08 -9.74 16 15 C -0.12 -2.24 4.76 36.01 0.17 -2.07 16 16 S -0.14 -3.48 18.55 -107.50 -1.99 -5.47 16 17 C -0.52 -14.63 10.04 30.94 0.31 -14.32 16 18 H 0.09 2.57 8.03 -52.49 -0.42 2.15 16 19 C 0.10 2.75 5.50 -17.43 -0.10 2.66 16 20 N -0.88 -26.14 13.97 55.49 0.78 -25.36 16 21 Si 0.86 21.31 27.74 -169.99 -4.71 16.59 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 23 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 24 H -0.24 -5.81 6.74 56.52 0.38 -5.43 16 25 C 0.15 1.61 2.75 -68.45 -0.19 1.42 16 26 H 0.10 1.08 7.86 -51.93 -0.41 0.67 16 27 C 0.09 1.01 5.54 -3.32 -0.02 0.99 16 28 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.74 5.14 -51.93 -0.27 0.48 16 34 H 0.08 0.73 8.11 -51.93 -0.42 0.31 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.57 5.48 -51.93 -0.28 0.28 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.68 7.40 -51.93 -0.38 0.29 16 40 H 0.07 0.68 7.23 -51.93 -0.38 0.31 16 41 H 0.10 1.67 7.48 -51.92 -0.39 1.28 16 42 H 0.10 1.68 7.39 -51.92 -0.38 1.29 16 43 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.08 1.04 7.07 -51.93 -0.37 0.68 16 LS Contribution 363.18 15.07 5.47 5.47 Total: -1.00 -34.01 363.18 -8.89 -42.90 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -7.08 Total: -0.99 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -0.46 Total: -0.02 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: -0.28 Total: -40.39 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.17 Total: -18.09 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.71 Total: 16.59 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -1.99 Total: -5.47 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.01 -8.89 -42.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001056606492.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.209 kcal (2) G-P(sol) polarization free energy of solvation -34.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds