Wall clock time and date at job start Tue Mar 31 2020 14:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50701 * 109.47499 * 2 1 4 4 O 1.21286 * 119.99632 * 359.97438 * 3 2 1 5 5 N 1.34773 * 120.00401 * 180.02562 * 3 2 1 6 6 C 1.47660 * 134.45768 * 180.02562 * 5 3 2 7 7 C 1.53516 * 85.97825 * 204.32766 * 6 5 3 8 8 C 1.47674 * 134.45447 * 0.02562 * 5 3 2 9 9 C 1.52670 * 113.56744 * 222.22944 * 7 6 5 10 10 C 1.53344 * 109.11400 * 286.18588 * 9 7 6 11 11 N 1.46888 * 108.75856 * 307.58838 * 10 9 7 12 12 C 1.34773 * 120.46961 * 235.56344 * 11 10 9 13 13 O 1.21273 * 120.00010 * 179.97438 * 12 11 10 14 14 C 1.50704 * 119.99991 * 359.97438 * 12 11 10 15 15 S 1.80994 * 109.47307 * 180.02562 * 14 12 11 16 16 C 1.76196 * 99.99990 * 180.02562 * 15 14 12 17 17 H 1.07996 * 120.00321 * 359.97438 * 16 15 14 18 18 C 1.38800 * 119.99752 * 180.02562 * 16 15 14 19 19 N 1.31629 * 120.00204 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99948 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47217 * 59.99698 * 20 18 16 22 22 H 1.48497 * 109.47356 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47183 * 300.00060 * 20 18 16 24 24 C 1.46888 * 119.06103 * 55.53841 * 11 10 9 25 25 C 1.52671 * 113.56383 * 91.01311 * 7 6 5 26 26 H 1.09001 * 109.47212 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47659 * 300.00135 * 1 2 3 28 28 H 1.09000 * 109.47211 * 60.00218 * 1 2 3 29 29 H 1.08999 * 109.47437 * 239.99362 * 2 1 3 30 30 H 1.09000 * 109.47211 * 119.99782 * 2 1 3 31 31 H 1.08997 * 113.79624 * 90.06537 * 6 5 3 32 32 H 1.09004 * 113.79376 * 318.59502 * 6 5 3 33 33 H 1.09001 * 113.78524 * 41.40376 * 8 5 3 34 34 H 1.08990 * 113.79090 * 269.93313 * 8 5 3 35 35 H 1.08997 * 109.52828 * 46.07283 * 9 7 6 36 36 H 1.08997 * 109.53039 * 166.29544 * 9 7 6 37 37 H 1.08994 * 109.58657 * 187.80678 * 10 9 7 38 38 H 1.08996 * 109.59095 * 67.36819 * 10 9 7 39 39 H 1.09004 * 109.47016 * 300.00157 * 14 12 11 40 40 H 1.09001 * 109.47215 * 59.99553 * 14 12 11 41 41 H 0.97006 * 120.00144 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.58768 * 184.67221 * 24 11 10 43 43 H 1.08999 * 109.58832 * 64.23916 * 24 11 10 44 44 H 1.09000 * 109.53307 * 193.69994 * 25 7 6 45 45 H 1.08998 * 109.53597 * 313.84770 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 4.1816 2.8922 -0.0002 7 6 5.2790 2.0244 -0.6321 8 6 4.5668 0.8197 -0.0016 9 6 6.6691 2.2833 -0.0565 10 6 7.1894 3.6256 -0.5847 11 7 7.0849 3.6291 -2.0499 12 6 8.1702 3.8702 -2.8118 13 8 8.0743 3.8706 -4.0207 14 6 9.5027 4.1394 -2.1614 15 16 10.7515 4.4245 -3.4401 16 6 12.1669 4.7041 -2.4286 17 1 12.0778 4.6667 -1.3529 18 6 13.3961 4.9733 -3.0142 19 7 13.5047 5.0194 -4.3252 20 14 14.8966 5.2704 -1.9418 21 1 15.1527 4.0703 -1.1055 22 1 16.0768 5.5336 -2.8037 23 1 14.6530 6.4428 -1.0636 24 6 5.7811 3.3655 -2.6729 25 6 5.2515 2.0215 -2.1586 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 4.4285 3.2559 0.9972 32 1 3.8060 3.6751 -0.6592 33 1 4.4972 -0.0449 -0.6618 34 1 4.9281 0.5678 0.9953 35 1 6.6124 2.3172 1.0315 36 1 7.3448 1.4846 -0.3626 37 1 8.2314 3.7541 -0.2923 38 1 6.5894 4.4374 -0.1737 39 1 9.4254 5.0220 -1.5264 40 1 9.7917 3.2804 -1.5559 41 1 14.3639 5.2072 -4.7345 42 1 5.8956 3.3229 -3.7560 43 1 5.0824 4.1590 -2.4080 44 1 5.8813 1.2144 -2.5329 45 1 4.2282 1.8754 -2.5044 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001060862581.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:26 Heat of formation + Delta-G solvation = -42.490490 kcal Electronic energy + Delta-G solvation = -25403.628797 eV Core-core repulsion = 21741.281408 eV Total energy + Delta-G solvation = -3662.347389 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.41548 -39.58219 -38.50984 -35.98772 -33.18340 -32.44699 -32.18505 -31.69091 -29.16211 -27.78808 -26.94417 -25.51147 -24.29073 -23.55738 -23.16420 -20.21263 -19.33081 -18.36944 -17.72266 -17.32304 -16.70753 -16.40285 -16.07816 -15.71197 -15.34750 -15.29698 -14.82107 -14.42451 -14.07482 -13.95818 -13.69081 -13.52248 -13.33661 -13.11947 -12.85374 -12.64769 -12.59067 -12.47728 -12.27971 -12.06723 -11.89189 -11.56439 -11.48829 -11.11428 -11.05649 -11.05054 -10.92981 -10.85151 -10.77036 -10.01246 -9.82857 -9.37626 -9.07765 -9.06871 -8.55597 -8.24661 -6.52106 -6.23102 -3.94029 2.29914 2.44696 2.90617 3.01922 3.21807 3.24188 3.27655 3.56927 3.79912 4.00063 4.18307 4.27519 4.42716 4.58728 4.65833 4.69046 4.79297 4.90786 4.94613 4.96318 5.06036 5.07644 5.11879 5.21076 5.25950 5.30601 5.36180 5.37380 5.45538 5.52096 5.53870 5.56009 5.61807 5.70141 5.80225 5.84169 5.84860 5.92438 5.98915 6.08527 6.61094 7.33552 7.52161 7.57451 7.83395 8.33028 8.53601 9.21938 10.84174 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.035232 B = 0.002203 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.551240 B =12708.789413 C =13094.518729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.138 4.138 3 C 0.532 3.468 4 O -0.542 6.542 5 N -0.645 5.645 6 C 0.114 3.886 7 C -0.090 4.090 8 C 0.109 3.891 9 C -0.121 4.121 10 C 0.109 3.891 11 N -0.619 5.619 12 C 0.535 3.465 13 O -0.517 6.517 14 C -0.151 4.151 15 S -0.061 6.061 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.918 3.082 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.114 3.886 25 C -0.107 4.107 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.269 0.731 42 H 0.096 0.904 43 H 0.063 0.937 44 H 0.076 0.924 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.495 -11.079 12.571 26.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.178 4.178 3 C 0.322 3.678 4 O -0.419 6.419 5 N -0.381 5.381 6 C -0.008 4.008 7 C -0.091 4.091 8 C -0.014 4.014 9 C -0.159 4.159 10 C -0.015 4.015 11 N -0.356 5.356 12 C 0.323 3.677 13 O -0.391 6.391 14 C -0.301 4.301 15 S 0.165 5.835 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.009 4.009 25 C -0.145 4.145 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.086 0.914 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.115 0.885 43 H 0.082 0.918 44 H 0.095 0.905 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -21.175 -10.588 10.597 25.938 hybrid contribution 1.122 0.098 2.296 2.557 sum -20.053 -10.490 12.893 26.046 Atomic orbital electron populations 1.21538 0.92920 1.01645 1.03392 1.21576 0.98493 0.93546 1.04220 1.20516 0.80070 0.91847 0.75346 1.90717 1.54129 1.46902 1.50202 1.50078 1.03821 1.10513 1.73690 1.23259 0.87017 0.89737 1.00797 1.22108 0.94596 0.95834 0.96563 1.23335 0.81623 0.95434 1.00981 1.21869 0.94928 0.98786 1.00358 1.21700 1.02973 0.96760 0.80064 1.48065 1.08644 1.72521 1.06346 1.20346 0.84871 0.75351 0.87127 1.90691 1.84810 1.49593 1.13979 1.23554 0.96688 1.04342 1.05527 1.85423 0.99022 1.92300 1.06706 1.22811 0.94757 1.56287 0.94563 0.90996 1.24991 0.98538 0.94692 0.95344 1.70007 1.25653 1.45632 1.08939 0.86231 0.80711 0.78852 0.79743 1.19947 1.20817 1.19937 1.21481 0.83926 0.95513 0.99940 1.21654 1.01855 0.98894 0.92141 0.91984 0.92034 0.91913 0.89014 0.89129 0.89575 0.89885 0.89751 0.89266 0.90125 0.90295 0.88825 0.91386 0.89286 0.89264 0.92117 0.88522 0.91831 0.90519 0.90635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.20 37.15 0.34 -0.59 16 2 C -0.14 -0.89 6.17 -27.89 -0.17 -1.06 16 3 C 0.53 5.32 8.06 -10.99 -0.09 5.23 16 4 O -0.54 -7.73 16.71 5.55 0.09 -7.64 16 5 N -0.64 -5.26 3.44 -180.22 -0.62 -5.88 16 6 C 0.11 0.88 7.62 -3.15 -0.02 0.86 16 7 C -0.09 -0.61 0.77 -154.42 -0.12 -0.73 16 8 C 0.11 0.59 7.75 -3.15 -0.02 0.57 16 9 C -0.12 -0.81 5.26 -26.72 -0.14 -0.95 16 10 C 0.11 1.01 6.22 -3.65 -0.02 0.98 16 11 N -0.62 -8.03 2.94 -172.65 -0.51 -8.54 16 12 C 0.53 9.73 7.71 -10.98 -0.08 9.64 16 13 O -0.52 -11.50 15.25 5.56 0.08 -11.42 16 14 C -0.15 -2.93 4.49 36.01 0.16 -2.77 16 15 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 16 C -0.54 -14.97 9.50 30.94 0.29 -14.68 16 17 H 0.07 1.88 7.80 -52.49 -0.41 1.48 16 18 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 19 N -0.87 -25.86 13.22 55.49 0.73 -25.13 16 20 Si 0.92 21.05 29.55 -169.99 -5.02 16.03 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 C 0.11 1.29 6.30 -3.65 -0.02 1.26 16 25 C -0.11 -0.92 5.22 -26.72 -0.14 -1.05 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 28 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.57 8.07 -51.93 -0.42 0.15 16 32 H 0.08 0.75 7.41 -51.93 -0.38 0.36 16 33 H 0.08 0.38 8.09 -51.93 -0.42 -0.04 16 34 H 0.09 0.35 8.09 -51.93 -0.42 -0.07 16 35 H 0.08 0.38 8.12 -51.93 -0.42 -0.04 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.91 5.89 -51.93 -0.31 0.60 16 38 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 39 H 0.09 1.61 7.90 -51.91 -0.41 1.20 16 40 H 0.09 1.58 7.72 -51.92 -0.40 1.18 16 41 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.10 1.30 6.98 -51.93 -0.36 0.94 16 43 H 0.06 0.65 7.49 -51.93 -0.39 0.26 16 44 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.08 0.63 8.01 -51.93 -0.42 0.22 16 LS Contribution 377.63 15.07 5.69 5.69 Total: -1.00 -36.32 377.63 -9.17 -45.49 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -7.27 Total: -3.45 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -0.14 Total: -1.31 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: -0.39 Total: -39.55 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: 0.18 Total: -19.06 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.32 -9.17 -45.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001060862581.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.999 kcal (2) G-P(sol) polarization free energy of solvation -36.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds