Wall clock time and date at job start Tue Mar 31 2020 14:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50704 * 109.47126 * 2 1 4 4 O 1.21273 * 119.99999 * 359.97438 * 3 2 1 5 5 N 1.34773 * 119.99991 * 179.97438 * 3 2 1 6 6 C 1.46888 * 120.46935 * 180.02562 * 5 3 2 7 7 C 1.53340 * 108.76168 * 124.43443 * 6 5 3 8 8 C 1.52671 * 109.11197 * 52.41268 * 7 6 5 9 9 C 1.53482 * 113.61895 * 170.87425 * 8 7 6 10 10 N 1.47674 * 85.98579 * 269.03741 * 9 8 7 11 11 C 1.34773 * 134.45447 * 155.66675 * 10 9 8 12 12 O 1.21286 * 119.99967 * 180.02562 * 11 10 9 13 13 C 1.50701 * 120.00401 * 0.02562 * 11 10 9 14 14 S 1.80996 * 109.47662 * 180.02562 * 13 11 10 15 15 C 1.76197 * 100.00430 * 180.02562 * 14 13 11 16 16 H 1.08002 * 119.99653 * 359.97438 * 15 14 13 17 17 C 1.38792 * 120.00499 * 179.97438 * 15 14 13 18 18 N 1.31628 * 120.00354 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99537 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47459 * 89.99862 * 19 17 15 21 21 H 1.48502 * 109.47023 * 209.99857 * 19 17 15 22 22 H 1.48497 * 109.47176 * 329.99679 * 19 17 15 23 23 C 1.47660 * 91.08784 * 335.67895 * 10 9 8 24 24 C 1.52670 * 113.18776 * 302.41332 * 8 7 6 25 25 C 1.46888 * 120.46961 * 359.97438 * 5 3 2 26 26 H 1.09003 * 109.46968 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47220 * 299.99863 * 1 2 3 28 28 H 1.09000 * 109.46819 * 60.00405 * 1 2 3 29 29 H 1.09004 * 109.47461 * 239.99920 * 2 1 3 30 30 H 1.09001 * 109.47279 * 120.00213 * 2 1 3 31 31 H 1.09001 * 109.58768 * 4.64717 * 6 5 3 32 32 H 1.08999 * 109.58832 * 244.21412 * 6 5 3 33 33 H 1.09000 * 109.52453 * 292.52388 * 7 6 5 34 34 H 1.09000 * 109.53078 * 172.31039 * 7 6 5 35 35 H 1.09001 * 113.78675 * 23.29892 * 9 8 7 36 36 H 1.08990 * 113.78921 * 154.76937 * 9 8 7 37 37 H 1.08999 * 109.47297 * 300.00993 * 13 11 10 38 38 H 1.09000 * 109.46711 * 60.00181 * 13 11 10 39 39 H 0.97003 * 120.00152 * 180.02562 * 18 17 15 40 40 H 1.08997 * 113.79624 * 270.05317 * 23 10 9 41 41 H 1.09004 * 113.79376 * 138.58282 * 23 10 9 42 42 H 1.08997 * 109.52828 * 177.47413 * 24 8 7 43 43 H 1.08997 * 109.53039 * 297.69675 * 24 8 7 44 44 H 1.08994 * 109.59041 * 355.34266 * 25 5 3 45 45 H 1.08996 * 109.58680 * 115.78105 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3573 1.6671 0.0005 6 6 3.8583 3.0479 0.0011 7 6 4.7979 3.2312 1.1990 8 6 5.8569 2.1317 1.1764 9 6 6.9825 2.3410 2.1986 10 7 7.6853 3.0661 1.1211 11 6 8.6387 4.0182 1.0900 12 8 9.0386 4.4414 0.0261 13 6 9.2079 4.5570 2.3772 14 16 10.4571 5.8129 2.0056 15 6 10.9405 6.2570 3.6407 16 1 10.4781 5.7758 4.4899 17 6 11.9155 7.2250 3.8375 18 7 12.2763 7.5570 5.0590 19 14 12.7146 8.0576 2.3686 20 1 11.9377 9.2692 2.0031 21 1 14.1048 8.4473 2.7163 22 1 12.7368 7.1183 1.2187 23 6 6.9246 2.3302 0.0914 24 6 5.2637 0.7252 1.1990 25 6 4.3210 0.5585 0.0017 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.0207 3.7405 0.0842 32 1 4.4032 3.2394 -0.9233 33 1 4.2253 3.1668 2.1242 34 1 5.2826 4.2055 1.1362 35 1 6.6995 2.9721 3.0411 36 1 7.4770 1.4187 2.5031 37 1 8.4089 5.0035 2.9690 38 1 9.6660 3.7438 2.9402 39 1 12.9574 8.2339 5.1965 40 1 7.4019 1.4046 -0.2303 41 1 6.5955 2.9525 -0.7408 42 1 6.0662 -0.0097 1.1361 43 1 4.7063 0.5796 2.1243 44 1 3.7883 -0.3887 0.0853 45 1 4.8982 0.5752 -0.9227 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001060911103.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:29 Heat of formation + Delta-G solvation = -41.969028 kcal Electronic energy + Delta-G solvation = -25404.039408 eV Core-core repulsion = 21741.714631 eV Total energy + Delta-G solvation = -3662.324777 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.37168 -39.96075 -38.14372 -36.30191 -33.46831 -32.45729 -32.17749 -31.51910 -29.84238 -27.37927 -26.26817 -25.58600 -25.26062 -23.86270 -22.97987 -20.24388 -19.30313 -18.44436 -17.75215 -17.49944 -16.65558 -16.26215 -16.15485 -16.03701 -15.56031 -14.96211 -14.78984 -14.59289 -14.26167 -14.14559 -13.96062 -13.46131 -13.34766 -13.09460 -12.94160 -12.81771 -12.80153 -12.42959 -12.22448 -12.10696 -12.00236 -11.67873 -11.58049 -11.29972 -11.15480 -11.03824 -11.01936 -10.83226 -10.61774 -10.09514 -9.86551 -9.49098 -9.02809 -9.01753 -8.68463 -8.51884 -6.94069 -6.30337 -4.02423 2.27941 2.55032 2.59828 2.91987 3.09862 3.32221 3.49378 3.55510 3.83160 4.05296 4.20856 4.31389 4.37317 4.42638 4.57562 4.63179 4.64822 4.68264 4.83835 4.92985 5.01798 5.08580 5.08940 5.11561 5.14899 5.20386 5.29221 5.34116 5.35575 5.42713 5.47564 5.50858 5.51891 5.64831 5.72615 5.78433 5.82393 5.89517 5.93972 5.99732 6.15527 7.00067 7.71745 7.82370 7.92649 8.39835 8.40943 9.15756 10.78812 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.033426 B = 0.002219 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.466544 B =12616.114205 C =12663.257591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.144 4.144 3 C 0.512 3.488 4 O -0.541 6.541 5 N -0.613 5.613 6 C 0.111 3.889 7 C -0.108 4.108 8 C -0.094 4.094 9 C 0.111 3.889 10 N -0.647 5.647 11 C 0.554 3.446 12 O -0.518 6.518 13 C -0.116 4.116 14 S -0.142 6.142 15 C -0.521 4.521 16 H 0.088 0.912 17 C 0.096 3.904 18 N -0.880 5.880 19 Si 0.857 3.143 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.235 1.235 23 C 0.117 3.883 24 C -0.120 4.120 25 C 0.107 3.893 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.271 0.729 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.088 0.912 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.561 -20.696 -8.684 30.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.184 4.184 3 C 0.301 3.699 4 O -0.418 6.418 5 N -0.347 5.347 6 C -0.011 4.011 7 C -0.146 4.146 8 C -0.095 4.095 9 C -0.012 4.012 10 N -0.386 5.386 11 C 0.343 3.657 12 O -0.393 6.393 13 C -0.266 4.266 14 S 0.084 5.916 15 C -0.669 4.669 16 H 0.106 0.894 17 C -0.113 4.113 18 N -0.516 5.516 19 Si 0.682 3.318 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.159 1.159 23 C -0.006 4.006 24 C -0.159 4.159 25 C -0.016 4.016 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.081 0.919 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.102 0.898 43 H 0.094 0.906 44 H 0.107 0.893 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.094 -19.273 -10.151 29.636 hybrid contribution 0.313 -0.078 1.006 1.056 sum -19.781 -19.351 -9.146 29.144 Atomic orbital electron populations 1.21542 0.93004 1.01602 1.03415 1.21670 0.98650 0.93909 1.04148 1.20824 0.81633 0.91939 0.75515 1.90702 1.54788 1.46657 1.49693 1.48145 1.05601 1.07370 1.73585 1.21614 0.98289 0.82958 0.98214 1.21649 0.95622 0.98324 0.99042 1.22123 0.94264 0.95960 0.97160 1.23231 0.89185 0.96318 0.92441 1.49959 1.40210 1.38645 1.09766 1.20001 0.76675 0.77865 0.91129 1.90711 1.58061 1.58416 1.32067 1.23211 1.02912 1.03177 0.97328 1.84792 1.45920 1.47080 1.13819 1.22297 1.27040 1.27257 0.90261 0.89408 1.24711 0.95219 0.95293 0.96086 1.69937 1.30494 1.31104 1.20096 0.86733 0.79423 0.81732 0.83955 1.19178 1.19907 1.15948 1.23145 0.88489 0.95775 0.93156 1.21844 0.99305 0.95646 0.99068 1.21773 0.91227 0.89677 0.98937 0.92059 0.91957 0.91999 0.88956 0.88881 0.88614 0.91220 0.90703 0.89795 0.89714 0.89489 0.88702 0.88673 0.91923 0.89945 0.90195 0.89781 0.90571 0.89324 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 9.20 37.16 0.34 -0.47 16 2 C -0.14 -0.73 4.76 -27.88 -0.13 -0.86 16 3 C 0.51 4.48 7.69 -10.98 -0.08 4.40 16 4 O -0.54 -7.05 15.37 5.56 0.09 -6.96 16 5 N -0.61 -4.42 2.94 -172.68 -0.51 -4.93 16 6 C 0.11 0.94 6.30 -3.65 -0.02 0.91 16 7 C -0.11 -0.88 5.21 -26.72 -0.14 -1.02 16 8 C -0.09 -0.67 0.77 -154.42 -0.12 -0.79 16 9 C 0.11 0.98 7.75 -3.16 -0.02 0.95 16 10 N -0.65 -8.38 3.44 -180.22 -0.62 -9.00 16 11 C 0.55 10.14 8.07 -10.99 -0.09 10.05 16 12 O -0.52 -11.53 16.59 5.55 0.09 -11.44 16 13 C -0.12 -2.29 5.90 36.01 0.21 -2.08 16 14 S -0.14 -3.65 18.55 -107.50 -1.99 -5.65 16 15 C -0.52 -15.07 10.04 30.94 0.31 -14.76 16 16 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 17 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 18 N -0.88 -26.56 13.97 55.49 0.78 -25.79 16 19 Si 0.86 21.88 27.74 -169.99 -4.72 17.16 16 20 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 23 C 0.12 1.10 7.62 -3.15 -0.02 1.08 16 24 C -0.12 -0.52 5.26 -26.75 -0.14 -0.66 16 25 C 0.11 0.44 6.22 -3.68 -0.02 0.42 16 26 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 28 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 29 H 0.09 0.30 7.90 -51.93 -0.41 -0.11 16 30 H 0.09 0.30 7.72 -51.93 -0.40 -0.10 16 31 H 0.10 0.97 6.98 -51.93 -0.36 0.61 16 32 H 0.07 0.57 7.49 -51.93 -0.39 0.18 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.84 8.01 -51.93 -0.42 0.42 16 35 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 36 H 0.09 0.62 8.09 -51.93 -0.42 0.20 16 37 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 38 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 39 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.08 0.65 8.07 -51.93 -0.42 0.23 16 41 H 0.08 0.82 7.41 -51.93 -0.38 0.43 16 42 H 0.08 0.26 8.12 -51.93 -0.42 -0.16 16 43 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.09 0.19 5.89 -51.93 -0.31 -0.12 16 45 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 LS Contribution 374.94 15.07 5.65 5.65 Total: -1.00 -36.90 374.94 -8.57 -45.47 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -7.30 Total: -4.40 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -0.03 Total: -0.12 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: -0.35 Total: -39.72 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: 0.18 Total: -18.40 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.72 Total: 17.16 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.90 -8.57 -45.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001060911103.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.501 kcal (2) G-P(sol) polarization free energy of solvation -36.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds