Wall clock time and date at job start Tue Mar 31 2020 14:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50704 * 109.47126 * 2 1 4 4 O 1.21273 * 119.99999 * 359.97438 * 3 2 1 5 5 N 1.34773 * 119.99991 * 179.97438 * 3 2 1 6 6 C 1.46888 * 120.46935 * 180.02562 * 5 3 2 7 7 C 1.53340 * 108.76168 * 124.43443 * 6 5 3 8 8 C 1.52671 * 109.11197 * 52.41268 * 7 6 5 9 9 C 1.53482 * 113.61895 * 170.87425 * 8 7 6 10 10 N 1.47674 * 85.98579 * 269.03741 * 9 8 7 11 11 C 1.34773 * 134.45447 * 155.66675 * 10 9 8 12 12 O 1.21286 * 119.99967 * 180.02562 * 11 10 9 13 13 C 1.50701 * 120.00401 * 0.02562 * 11 10 9 14 14 S 1.80996 * 109.47662 * 180.02562 * 13 11 10 15 15 C 1.76197 * 100.00430 * 180.02562 * 14 13 11 16 16 H 1.08002 * 119.99653 * 359.97438 * 15 14 13 17 17 C 1.38792 * 120.00499 * 179.97438 * 15 14 13 18 18 N 1.31628 * 120.00354 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99537 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47459 * 89.99862 * 19 17 15 21 21 H 1.48502 * 109.47023 * 209.99857 * 19 17 15 22 22 H 1.48497 * 109.47176 * 329.99679 * 19 17 15 23 23 C 1.47660 * 91.08784 * 335.67895 * 10 9 8 24 24 C 1.52670 * 113.18776 * 302.41332 * 8 7 6 25 25 C 1.46888 * 120.46961 * 359.97438 * 5 3 2 26 26 H 1.09003 * 109.46968 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47220 * 299.99863 * 1 2 3 28 28 H 1.09000 * 109.46819 * 60.00405 * 1 2 3 29 29 H 1.09004 * 109.47461 * 239.99920 * 2 1 3 30 30 H 1.09001 * 109.47279 * 120.00213 * 2 1 3 31 31 H 1.09001 * 109.58768 * 4.64717 * 6 5 3 32 32 H 1.08999 * 109.58832 * 244.21412 * 6 5 3 33 33 H 1.09000 * 109.52453 * 292.52388 * 7 6 5 34 34 H 1.09000 * 109.53078 * 172.31039 * 7 6 5 35 35 H 1.09001 * 113.78675 * 23.29892 * 9 8 7 36 36 H 1.08990 * 113.78921 * 154.76937 * 9 8 7 37 37 H 1.08999 * 109.47297 * 300.00993 * 13 11 10 38 38 H 1.09000 * 109.46711 * 60.00181 * 13 11 10 39 39 H 0.97003 * 120.00152 * 180.02562 * 18 17 15 40 40 H 1.08997 * 113.79624 * 270.05317 * 23 10 9 41 41 H 1.09004 * 113.79376 * 138.58282 * 23 10 9 42 42 H 1.08997 * 109.52828 * 177.47413 * 24 8 7 43 43 H 1.08997 * 109.53039 * 297.69675 * 24 8 7 44 44 H 1.08994 * 109.59041 * 355.34266 * 25 5 3 45 45 H 1.08996 * 109.58680 * 115.78105 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3573 1.6671 0.0005 6 6 3.8583 3.0479 0.0011 7 6 4.7979 3.2312 1.1990 8 6 5.8569 2.1317 1.1764 9 6 6.9825 2.3410 2.1986 10 7 7.6853 3.0661 1.1211 11 6 8.6387 4.0182 1.0900 12 8 9.0386 4.4414 0.0261 13 6 9.2079 4.5570 2.3772 14 16 10.4571 5.8129 2.0056 15 6 10.9405 6.2570 3.6407 16 1 10.4781 5.7758 4.4899 17 6 11.9155 7.2250 3.8375 18 7 12.2763 7.5570 5.0590 19 14 12.7146 8.0576 2.3686 20 1 11.9377 9.2692 2.0031 21 1 14.1048 8.4473 2.7163 22 1 12.7368 7.1183 1.2187 23 6 6.9246 2.3302 0.0914 24 6 5.2637 0.7252 1.1990 25 6 4.3210 0.5585 0.0017 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.0207 3.7405 0.0842 32 1 4.4032 3.2394 -0.9233 33 1 4.2253 3.1668 2.1242 34 1 5.2826 4.2055 1.1362 35 1 6.6995 2.9721 3.0411 36 1 7.4770 1.4187 2.5031 37 1 8.4089 5.0035 2.9690 38 1 9.6660 3.7438 2.9402 39 1 12.9574 8.2339 5.1965 40 1 7.4019 1.4046 -0.2303 41 1 6.5955 2.9525 -0.7408 42 1 6.0662 -0.0097 1.1361 43 1 4.7063 0.5796 2.1243 44 1 3.7883 -0.3887 0.0853 45 1 4.8982 0.5752 -0.9227 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001060911103.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:28 Heat of formation + Delta-G solvation = -67.193382 kcal Electronic energy + Delta-G solvation = -25405.133218 eV Core-core repulsion = 21741.714631 eV Total energy + Delta-G solvation = -3663.418587 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.13577 -40.76025 -39.36221 -37.08947 -34.70250 -34.00404 -33.03479 -32.04987 -31.17366 -28.26994 -27.88197 -27.07727 -25.86074 -24.37373 -23.59506 -21.09702 -20.39000 -19.56482 -19.06934 -18.26840 -17.83298 -17.20430 -17.05439 -16.87777 -16.78228 -16.59246 -15.82166 -15.77552 -15.15053 -15.01163 -14.91375 -14.82640 -14.29365 -14.04191 -13.93449 -13.76315 -13.55279 -13.37805 -13.23943 -13.07707 -13.03236 -12.84555 -12.66975 -12.57203 -12.17564 -11.99408 -11.93490 -11.84424 -11.63810 -11.51737 -11.19952 -10.90104 -10.69864 -10.57855 -9.76819 -9.61450 -9.04150 -8.54202 -6.25892 0.92832 1.29277 1.41582 1.49450 1.53072 1.66496 1.95381 2.05490 2.22615 2.64081 2.83813 3.15228 3.42804 3.55583 3.72705 3.84167 3.96046 4.09084 4.14733 4.21692 4.28979 4.29704 4.37104 4.45889 4.50066 4.54247 4.57200 4.65864 4.71098 4.73516 4.83159 4.86213 4.88687 5.01149 5.03229 5.06348 5.09420 5.23767 5.34408 5.37401 5.59301 5.67965 6.08104 6.45560 6.56369 6.90702 7.05554 7.21732 8.58118 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.033426 B = 0.002219 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.466544 B =12616.114205 C =12663.257591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.136 4.136 3 C 0.502 3.498 4 O -0.597 6.597 5 N -0.610 5.610 6 C 0.114 3.886 7 C -0.103 4.103 8 C -0.076 4.076 9 C 0.107 3.893 10 N -0.646 5.646 11 C 0.552 3.448 12 O -0.569 6.569 13 C -0.101 4.101 14 S -0.177 6.177 15 C -0.529 4.529 16 H 0.062 0.938 17 C 0.046 3.954 18 N -0.915 5.915 19 Si 0.914 3.086 20 H -0.263 1.263 21 H -0.257 1.257 22 H -0.238 1.238 23 C 0.114 3.886 24 C -0.112 4.112 25 C 0.100 3.900 26 H 0.086 0.914 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.119 0.881 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.278 0.722 40 H 0.111 0.889 41 H 0.067 0.933 42 H 0.112 0.888 43 H 0.085 0.915 44 H 0.121 0.879 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.971 -24.158 -9.303 33.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.175 4.175 3 C 0.293 3.707 4 O -0.478 6.478 5 N -0.342 5.342 6 C -0.009 4.009 7 C -0.142 4.142 8 C -0.077 4.077 9 C -0.014 4.014 10 N -0.382 5.382 11 C 0.341 3.659 12 O -0.449 6.449 13 C -0.252 4.252 14 S 0.050 5.950 15 C -0.676 4.676 16 H 0.080 0.920 17 C -0.160 4.160 18 N -0.553 5.553 19 Si 0.736 3.264 20 H -0.188 1.188 21 H -0.181 1.181 22 H -0.162 1.162 23 C -0.008 4.008 24 C -0.150 4.150 25 C -0.021 4.021 26 H 0.104 0.896 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.138 0.862 30 H 0.140 0.860 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.102 0.898 36 H 0.136 0.864 37 H 0.122 0.878 38 H 0.127 0.873 39 H 0.087 0.913 40 H 0.129 0.871 41 H 0.086 0.914 42 H 0.130 0.870 43 H 0.104 0.896 44 H 0.139 0.861 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -20.523 -22.808 -10.742 32.508 hybrid contribution 0.275 0.880 1.245 1.549 sum -20.248 -21.929 -9.496 31.321 Atomic orbital electron populations 1.21551 0.94071 1.02546 1.01541 1.21740 0.97678 0.91432 1.06699 1.21626 0.81604 0.93082 0.74404 1.90682 1.56251 1.48588 1.52311 1.48260 1.05915 1.07474 1.72573 1.21428 0.97325 0.83894 0.98281 1.21554 0.95847 0.97825 0.98939 1.21962 0.93003 0.97591 0.95115 1.23650 0.89052 0.96823 0.91925 1.50041 1.37875 1.37111 1.13132 1.19616 0.77694 0.79114 0.89463 1.90682 1.60428 1.60687 1.33088 1.23159 1.01356 1.01666 0.98977 1.84714 1.48569 1.49842 1.11876 1.22424 1.26906 1.27121 0.91197 0.92009 1.25559 0.95815 0.95939 0.98639 1.70010 1.31383 1.31995 1.21885 0.85869 0.79290 0.80596 0.80624 1.18765 1.18073 1.16174 1.23508 0.88518 0.95923 0.92844 1.21867 1.00067 0.93485 0.99599 1.22109 0.90952 0.89690 0.99368 0.89559 0.93889 0.93954 0.86234 0.86015 0.91214 0.91239 0.90590 0.92233 0.89757 0.86359 0.87751 0.87276 0.91298 0.87085 0.91402 0.86998 0.89606 0.86118 0.89891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.20 71.98 0.66 -0.77 16 2 C -0.14 -0.93 4.76 29.85 0.14 -0.79 16 3 C 0.50 8.10 7.69 87.66 0.67 8.78 16 4 O -0.60 -16.04 15.37 -3.01 -0.05 -16.08 16 5 N -0.61 -7.49 2.94 -818.63 -2.41 -9.90 16 6 C 0.11 1.89 6.30 86.42 0.54 2.43 16 7 C -0.10 -1.60 5.21 30.60 0.16 -1.44 16 8 C -0.08 -0.84 0.77 -52.03 -0.04 -0.88 16 9 C 0.11 1.52 7.75 86.31 0.67 2.19 16 10 N -0.65 -15.51 3.44 -842.49 -2.90 -18.41 16 11 C 0.55 19.94 8.07 87.66 0.71 20.65 16 12 O -0.57 -25.56 16.59 -3.05 -0.05 -25.61 16 13 C -0.10 -3.96 5.90 71.24 0.42 -3.54 16 14 S -0.18 -9.15 18.55 -56.49 -1.05 -10.19 16 15 C -0.53 -31.18 10.04 67.95 0.68 -30.50 16 16 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 17 C 0.05 2.73 5.50 84.86 0.47 3.19 16 18 N -0.91 -55.92 13.97 21.65 0.30 -55.62 16 19 Si 0.91 45.46 27.74 68.60 1.90 47.36 16 20 H -0.26 -12.79 7.11 99.48 0.71 -12.09 16 21 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.24 -11.84 6.74 99.48 0.67 -11.17 16 23 C 0.11 1.83 7.62 86.33 0.66 2.48 16 24 C -0.11 -0.39 5.26 30.58 0.16 -0.23 16 25 C 0.10 0.37 6.22 86.41 0.54 0.90 16 26 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.04 0.60 8.10 -2.39 -0.02 0.58 16 28 H 0.04 0.59 8.10 -2.39 -0.02 0.57 16 29 H 0.12 0.21 7.90 -2.38 -0.02 0.20 16 30 H 0.12 0.18 7.72 -2.39 -0.02 0.16 16 31 H 0.07 1.53 6.98 -2.39 -0.02 1.51 16 32 H 0.07 1.14 7.49 -2.39 -0.02 1.12 16 33 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.06 1.22 8.01 -2.39 -0.02 1.20 16 35 H 0.08 1.26 8.09 -2.39 -0.02 1.24 16 36 H 0.12 1.08 8.09 -2.39 -0.02 1.06 16 37 H 0.10 3.87 8.14 -2.40 -0.02 3.85 16 38 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 39 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 40 H 0.11 1.25 8.07 -2.39 -0.02 1.23 16 41 H 0.07 1.30 7.41 -2.38 -0.02 1.28 16 42 H 0.11 -0.08 8.12 -2.39 -0.02 -0.10 16 43 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 44 H 0.12 -0.24 5.89 -2.39 -0.01 -0.26 16 45 H 0.08 0.22 8.08 -2.39 -0.02 0.20 16 Total: -1.00 -85.27 374.94 3.13 -82.14 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: 0.93 Total: 3.85 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: 6.44 Total: 2.48 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -5.01 Total: -83.93 kcal Atomic # 8 Polarization: -41.60 SS G_CDS: -0.10 Total: -41.70 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.90 Total: 47.36 kcal Atomic # 16 Polarization: -9.15 SS G_CDS: -1.05 Total: -10.19 kcal Total: -85.27 3.13 -82.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001060911103.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.942 kcal (2) G-P(sol) polarization free energy of solvation -85.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds