Wall clock time and date at job start Tue Mar 31 2020 14:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 115.56025 * 2 1 4 4 C 1.52995 * 117.49963 * 214.31707 * 2 1 3 5 5 C 1.53005 * 60.03113 * 252.51848 * 4 2 1 6 6 H 1.09003 * 117.49524 * 252.47557 * 5 4 2 7 7 C 1.50697 * 117.49991 * 107.47465 * 5 4 2 8 8 O 1.21279 * 120.00437 * 291.39561 * 7 5 4 9 9 N 1.34784 * 119.99755 * 111.39148 * 7 5 4 10 10 C 1.46496 * 119.99850 * 180.02562 * 9 7 5 11 11 C 1.53002 * 109.47051 * 175.08249 * 10 9 7 12 12 N 1.46500 * 112.84778 * 49.25249 * 11 10 9 13 13 C 1.34781 * 119.99951 * 65.37235 * 12 11 10 14 14 O 1.21283 * 119.99938 * 354.95694 * 13 12 11 15 15 C 1.50693 * 119.99956 * 174.96221 * 13 12 11 16 16 S 1.81002 * 109.47054 * 179.97438 * 15 13 12 17 17 C 1.76205 * 100.00045 * 179.97438 * 16 15 13 18 18 H 1.07999 * 119.99620 * 0.02562 * 17 16 15 19 19 C 1.38792 * 120.00152 * 179.97438 * 17 16 15 20 20 N 1.31634 * 119.99882 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00136 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46967 * 90.00171 * 21 19 17 23 23 H 1.48502 * 109.46870 * 210.00397 * 21 19 17 24 24 H 1.48498 * 109.47097 * 330.00054 * 21 19 17 25 25 C 1.53780 * 113.61442 * 278.05734 * 11 10 9 26 26 C 1.53956 * 87.01951 * 220.04965 * 25 11 10 27 27 C 1.53777 * 87.11274 * 25.36334 * 26 25 11 28 28 H 1.08996 * 109.46970 * 154.30183 * 1 2 3 29 29 H 1.09001 * 109.46939 * 274.29441 * 1 2 3 30 30 H 1.08997 * 109.47092 * 34.29226 * 1 2 3 31 31 H 1.09003 * 117.50326 * 145.02041 * 4 2 1 32 32 H 1.08998 * 117.49790 * 0.02562 * 4 2 1 33 33 H 0.97001 * 119.99954 * 359.97438 * 9 7 5 34 34 H 1.09001 * 109.47085 * 295.07829 * 10 9 7 35 35 H 1.08997 * 109.47422 * 55.07767 * 10 9 7 36 36 H 0.96997 * 119.99944 * 245.36336 * 12 11 10 37 37 H 1.09006 * 109.47117 * 299.99448 * 15 13 12 38 38 H 1.08999 * 109.47679 * 59.99400 * 15 13 12 39 39 H 0.97002 * 120.00005 * 179.97438 * 20 19 17 40 40 H 1.09003 * 113.61297 * 334.56795 * 25 11 10 41 41 H 1.09002 * 113.61438 * 105.46871 * 25 11 10 42 42 H 1.08993 * 113.53408 * 270.80874 * 26 25 11 43 43 H 1.09000 * 113.74042 * 139.94644 * 26 25 11 44 44 H 1.08997 * 113.61302 * 220.09164 * 27 26 25 45 45 H 1.08999 * 113.61422 * 89.18877 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1209 -0.7651 5 6 2.2367 -1.1218 0.7650 6 1 3.1721 -0.8769 1.2682 7 6 1.3721 -2.1416 1.4603 8 8 0.1640 -2.0541 1.4008 9 7 1.9416 -3.1510 2.1484 10 6 1.1011 -4.1427 2.8239 11 6 1.9856 -5.2388 3.4214 12 7 3.1024 -4.7045 4.2047 13 6 2.8622 -4.0189 5.3401 14 8 1.7217 -3.7653 5.6654 15 6 4.0106 -3.5676 6.2050 16 16 3.3684 -2.6791 7.6452 17 6 4.8802 -2.2794 8.4574 18 1 5.8219 -2.5854 8.0264 19 6 4.8607 -1.5705 9.6505 20 7 3.7128 -1.1971 10.1755 21 14 6.4634 -1.1462 10.5111 22 1 6.9528 0.1691 10.0255 23 1 6.2354 -1.0791 11.9770 24 1 7.4760 -2.1912 10.2150 25 6 2.4048 -6.3143 2.4054 26 6 2.1793 -7.3460 3.5257 27 6 1.1956 -6.3406 4.1472 28 1 -0.3633 -0.9260 -0.4456 29 1 -0.3633 0.0770 1.0248 30 1 -0.3633 0.8490 -0.5790 31 1 3.1716 -0.8750 -1.2684 32 1 1.6112 -1.8580 -1.2688 33 1 2.9079 -3.2213 2.1957 34 1 0.5356 -3.6580 3.6198 35 1 0.4110 -4.5843 2.1050 36 1 4.0147 -4.8442 3.9064 37 1 4.5786 -4.4366 6.5374 38 1 4.6602 -2.9069 5.6309 39 1 3.6991 -0.7020 11.0095 40 1 1.7126 -6.4190 1.5698 41 1 3.4443 -6.2334 2.0877 42 1 3.0641 -7.5256 4.1364 43 1 1.7058 -8.2669 3.1855 44 1 1.2604 -6.2809 5.2336 45 1 0.1723 -6.4525 3.7887 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001062434413.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:59 Heat of formation + Delta-G solvation = -31.339009 kcal Electronic energy + Delta-G solvation = -25594.906318 eV Core-core repulsion = 21933.042493 eV Total energy + Delta-G solvation = -3661.863825 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.77450 -39.85056 -37.88343 -36.73695 -34.43735 -33.05260 -32.45460 -29.59715 -28.82416 -27.77384 -26.00186 -25.51744 -24.35168 -22.51581 -21.24857 -20.80366 -20.05595 -19.11526 -17.88774 -17.28739 -16.53075 -16.41439 -15.81530 -15.35712 -15.23207 -14.88853 -14.83062 -14.59860 -14.22514 -13.94719 -13.50814 -13.32851 -13.16288 -12.82996 -12.69118 -12.57063 -12.47448 -12.34846 -12.18451 -11.71079 -11.64133 -11.13182 -11.08794 -11.05384 -10.97931 -10.78801 -10.54791 -10.42927 -10.24722 -9.84792 -9.58340 -9.45154 -9.09992 -9.01705 -8.90685 -8.26754 -6.52981 -6.24295 -3.95210 2.48096 2.87157 3.00976 3.12151 3.20093 3.25515 3.28969 3.60793 3.64224 4.16570 4.18577 4.37301 4.44983 4.55621 4.62293 4.65768 4.69543 4.98158 5.05007 5.10965 5.20683 5.23639 5.40323 5.43307 5.47270 5.51407 5.63717 5.64564 5.65537 5.71702 5.80913 5.86127 5.87649 5.93672 6.01777 6.02137 6.07767 6.08970 6.34503 6.47621 6.66769 7.47585 7.56411 7.61623 8.24224 8.32115 8.55371 9.20995 10.83030 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010808 B = 0.003271 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.971072 B = 8559.015764 C =10318.734417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.118 4.118 3 H 0.111 0.889 4 C -0.152 4.152 5 C -0.194 4.194 6 H 0.122 0.878 7 C 0.542 3.458 8 O -0.537 6.537 9 N -0.717 5.717 10 C 0.122 3.878 11 C 0.144 3.856 12 N -0.722 5.722 13 C 0.535 3.465 14 O -0.504 6.504 15 C -0.154 4.154 16 S -0.057 6.057 17 C -0.537 4.537 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C -0.136 4.136 26 C -0.138 4.138 27 C -0.135 4.135 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.398 0.602 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.399 0.601 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.269 0.731 40 H 0.094 0.906 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.249 -7.635 -22.210 23.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.137 4.137 3 H 0.129 0.871 4 C -0.190 4.190 5 C -0.215 4.215 6 H 0.140 0.860 7 C 0.329 3.671 8 O -0.414 6.414 9 N -0.368 5.368 10 C -0.003 4.003 11 C 0.056 3.944 12 N -0.378 5.378 13 C 0.321 3.679 14 O -0.377 6.377 15 C -0.304 4.304 16 S 0.170 5.830 17 C -0.685 4.685 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.173 4.173 26 C -0.176 4.176 27 C -0.174 4.174 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.232 0.768 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.233 0.767 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.113 0.887 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.100 0.900 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.650 -7.079 -21.514 22.804 hybrid contribution 3.513 -0.125 0.270 3.526 sum 0.863 -7.204 -21.244 22.449 Atomic orbital electron populations 1.21362 0.91451 1.01219 1.02827 1.22377 0.96663 0.93570 1.01046 0.87138 1.23063 1.02996 1.02073 0.90860 1.22303 1.02291 1.01327 0.95561 0.85977 1.19620 0.88116 0.81056 0.78352 1.90699 1.14541 1.74523 1.61604 1.45770 1.10345 1.27677 1.53025 1.21674 0.92937 0.88984 0.96655 1.21470 0.88681 0.91637 0.92587 1.45767 1.08441 1.58228 1.25319 1.20303 0.90809 0.76634 0.80143 1.90713 1.22899 1.53326 1.70718 1.23538 0.99626 1.04515 1.02762 1.85445 1.11496 1.68631 1.17477 1.22859 0.92987 1.42067 1.10608 0.90977 1.24989 0.97372 0.94974 0.96210 1.70017 1.24773 1.36058 1.19350 0.86175 0.81993 0.78850 0.78524 1.20257 1.20730 1.19703 1.23287 1.02238 0.94977 0.96835 1.22858 1.00056 0.97219 0.97461 1.23175 0.98509 0.93896 1.01789 0.91863 0.91176 0.93357 0.87974 0.88379 0.76847 0.89682 0.90833 0.76657 0.89256 0.89418 0.92147 0.88734 0.90877 0.89947 0.91100 0.90022 0.89111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 8.43 37.16 0.31 -0.94 16 2 C -0.12 -1.16 6.41 -90.58 -0.58 -1.74 16 3 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 4 C -0.15 -1.25 9.88 -26.73 -0.26 -1.51 16 5 C -0.19 -1.98 6.19 -91.73 -0.57 -2.55 16 6 H 0.12 1.09 8.14 -51.93 -0.42 0.66 16 7 C 0.54 7.15 7.59 -10.98 -0.08 7.06 16 8 O -0.54 -8.78 13.10 5.56 0.07 -8.71 16 9 N -0.72 -8.34 5.44 -60.30 -0.33 -8.66 16 10 C 0.12 1.54 4.86 -4.04 -0.02 1.52 16 11 C 0.14 1.52 0.66 -131.00 -0.09 1.43 16 12 N -0.72 -8.34 4.44 -46.85 -0.21 -8.55 16 13 C 0.53 9.16 7.34 -10.99 -0.08 9.08 16 14 O -0.50 -10.71 13.95 5.56 0.08 -10.63 16 15 C -0.15 -2.94 6.16 36.00 0.22 -2.71 16 16 S -0.06 -1.51 20.57 -107.50 -2.21 -3.73 16 17 C -0.54 -15.07 9.50 30.94 0.29 -14.78 16 18 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 19 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 20 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 21 Si 0.92 21.19 29.55 -169.99 -5.02 16.17 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 C -0.14 -1.00 7.38 -25.83 -0.19 -1.19 16 26 C -0.14 -1.14 8.00 -25.83 -0.21 -1.34 16 27 C -0.13 -1.47 7.03 -25.92 -0.18 -1.66 16 28 H 0.06 0.77 7.01 -51.93 -0.36 0.40 16 29 H 0.07 0.95 7.26 -51.93 -0.38 0.57 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.10 0.83 8.05 -51.93 -0.42 0.42 16 33 H 0.40 3.79 7.97 -40.82 -0.33 3.46 16 34 H 0.08 1.43 6.99 -51.93 -0.36 1.06 16 35 H 0.07 0.87 7.95 -51.93 -0.41 0.46 16 36 H 0.40 3.40 8.66 -40.82 -0.35 3.04 16 37 H 0.09 1.58 8.14 -51.91 -0.42 1.16 16 38 H 0.09 1.53 8.14 -51.92 -0.42 1.11 16 39 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.09 0.64 7.97 -51.93 -0.41 0.22 16 41 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 42 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.08 1.13 7.55 -51.93 -0.39 0.74 16 45 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 LS Contribution 383.37 15.07 5.78 5.78 Total: -1.00 -35.11 383.37 -9.83 -44.93 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -7.19 Total: 6.00 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -1.53 Total: -7.33 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 0.20 Total: -42.48 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: 0.15 Total: -19.34 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.11 -9.83 -44.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062434413.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.594 kcal (2) G-P(sol) polarization free energy of solvation -35.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds