Wall clock time and date at job start Tue Mar 31 2020 14:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 115.54822 * 2 1 4 4 C 1.53074 * 117.51405 * 145.72555 * 2 1 3 5 5 C 1.52999 * 117.49719 * 214.33625 * 2 1 3 6 6 H 1.09000 * 117.49815 * 359.97438 * 5 2 1 7 7 C 1.50695 * 117.49806 * 144.99429 * 5 2 1 8 8 O 1.21278 * 120.00531 * 359.91292 * 7 5 2 9 9 N 1.34778 * 119.99814 * 179.91225 * 7 5 2 10 10 C 1.46502 * 120.00056 * 180.02562 * 9 7 5 11 11 H 1.09002 * 109.49564 * 324.99841 * 10 9 7 12 12 C 1.53039 * 109.49895 * 204.93416 * 10 9 7 13 13 C 1.53106 * 109.50508 * 178.68614 * 12 10 9 14 14 C 1.53185 * 109.33343 * 61.34143 * 13 12 10 15 15 N 1.46927 * 108.77460 * 305.36941 * 14 13 12 16 16 C 1.34783 * 120.63120 * 233.58596 * 15 14 13 17 17 O 1.21275 * 120.00357 * 180.02562 * 16 15 14 18 18 C 1.50707 * 119.99799 * 0.02562 * 16 15 14 19 19 S 1.80997 * 109.47131 * 180.02562 * 18 16 15 20 20 C 1.76203 * 99.99848 * 180.02562 * 19 18 16 21 21 H 1.07995 * 119.99739 * 359.97438 * 20 19 18 22 22 C 1.38798 * 119.99588 * 180.02562 * 20 19 18 23 23 N 1.31624 * 120.00472 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99748 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47337 * 89.99393 * 24 22 20 26 26 H 1.48495 * 109.47287 * 209.99686 * 24 22 20 27 27 H 1.48503 * 109.47241 * 329.99625 * 24 22 20 28 28 C 1.46919 * 118.74315 * 53.60638 * 15 14 13 29 29 H 1.09003 * 109.47133 * 205.67307 * 1 2 3 30 30 H 1.09006 * 109.47001 * 325.66463 * 1 2 3 31 31 H 1.09004 * 109.47330 * 85.66264 * 1 2 3 32 32 H 1.08996 * 117.49145 * 359.97438 * 4 2 1 33 33 H 1.08997 * 117.50948 * 214.95171 * 4 2 1 34 34 H 0.97005 * 119.99996 * 359.97438 * 9 7 5 35 35 H 1.09006 * 109.46255 * 298.67075 * 12 10 9 36 36 H 1.08997 * 109.45914 * 58.62679 * 12 10 9 37 37 H 1.09008 * 109.48567 * 301.38299 * 13 12 10 38 38 H 1.09000 * 109.48993 * 181.30340 * 13 12 10 39 39 H 1.08996 * 109.59131 * 185.58096 * 14 13 12 40 40 H 1.09001 * 109.70543 * 65.21903 * 14 13 12 41 41 H 1.08999 * 109.46786 * 300.00316 * 18 16 15 42 42 H 1.09008 * 109.46619 * 59.99968 * 18 16 15 43 43 H 0.97001 * 120.00719 * 180.02562 * 23 22 20 44 44 H 1.09001 * 109.59116 * 186.60805 * 28 15 14 45 45 H 1.09006 * 109.70559 * 66.25082 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2371 -1.1219 0.7645 5 6 2.2364 -1.1207 -0.7655 6 1 1.6111 -1.8581 -1.2687 7 6 3.5288 -0.7803 -1.4617 8 8 3.9704 0.3477 -1.4033 9 7 4.1942 -1.7297 -2.1492 10 6 5.4509 -1.3990 -2.8256 11 1 5.4005 -0.3800 -3.2091 12 6 5.6777 -2.3709 -3.9858 13 6 6.9745 -2.0052 -4.7130 14 6 8.1525 -2.1278 -3.7415 15 7 7.8743 -1.3072 -2.5549 16 6 8.7606 -0.3820 -2.1366 17 8 8.5195 0.2887 -1.1554 18 6 10.0513 -0.1809 -2.8883 19 16 11.0203 1.1203 -2.0858 20 6 12.4315 1.1454 -3.1406 21 1 12.4877 0.4724 -3.9833 22 6 13.4713 2.0293 -2.8877 23 7 13.4029 2.8492 -1.8603 24 14 14.9677 2.0554 -4.0055 25 1 14.7440 3.0229 -5.1096 26 1 16.1624 2.4639 -3.2238 27 1 15.1864 0.7001 -4.5716 28 6 6.6118 -1.5147 -1.8327 29 1 -0.3633 -0.9262 0.4452 30 1 -0.3633 0.8486 0.5797 31 1 -0.3634 0.0777 -1.0247 32 1 1.6121 -1.8595 1.2678 33 1 3.1725 -0.8765 1.2675 34 1 3.8412 -2.6320 -2.1956 35 1 5.7528 -3.3872 -3.5989 36 1 4.8405 -2.3081 -4.6809 37 1 6.9097 -0.9804 -5.0788 38 1 7.1238 -2.6831 -5.5533 39 1 9.0632 -1.7741 -4.2249 40 1 8.2772 -3.1691 -3.4446 41 1 10.6207 -1.1103 -2.8876 42 1 9.8318 0.1101 -3.9156 43 1 14.1294 3.4673 -1.6837 44 1 6.5058 -0.7566 -1.0567 45 1 6.6068 -2.5057 -1.3785 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070454450.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:10 Heat of formation + Delta-G solvation = -55.761106 kcal Electronic energy + Delta-G solvation = -25162.540864 eV Core-core repulsion = 21499.618018 eV Total energy + Delta-G solvation = -3662.922846 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.57726 -39.61629 -37.66869 -36.72734 -34.70361 -32.42045 -32.34318 -30.82641 -29.23578 -28.52410 -25.57491 -25.17199 -24.67731 -22.81998 -21.29488 -21.03522 -20.18120 -19.04883 -17.73334 -17.64134 -16.77640 -16.24023 -15.84244 -15.30498 -15.18129 -14.78643 -14.75990 -14.63435 -14.10509 -13.86106 -13.80442 -13.61844 -13.26825 -13.15387 -13.04216 -12.81176 -12.51298 -12.37877 -11.94498 -11.82793 -11.70533 -11.29580 -11.23666 -11.04776 -10.99954 -10.83706 -10.73449 -10.69910 -10.43034 -9.99103 -9.79195 -9.51258 -9.28626 -9.04641 -8.46398 -8.19049 -6.47433 -6.19152 -3.89751 2.28610 2.65520 3.06214 3.10724 3.23708 3.28273 3.32013 3.49493 3.63233 4.21951 4.29913 4.39742 4.42414 4.47881 4.57973 4.67455 4.81186 4.83553 4.97756 5.00135 5.11546 5.15694 5.24472 5.26668 5.32660 5.36302 5.39588 5.53504 5.55626 5.61610 5.66941 5.69579 5.70285 5.77731 5.89434 5.96361 5.99155 6.01426 6.12773 6.19414 6.65465 7.25083 7.57073 7.61573 8.04267 8.37195 8.59966 9.25730 10.88239 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.020896 B = 0.002410 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.622282 B =11616.128779 C =12583.507193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.123 4.123 3 H 0.119 0.881 4 C -0.149 4.149 5 C -0.192 4.192 6 H 0.122 0.878 7 C 0.540 3.460 8 O -0.527 6.527 9 N -0.723 5.723 10 C 0.131 3.869 11 H 0.093 0.907 12 C -0.124 4.124 13 C -0.132 4.132 14 C 0.105 3.895 15 N -0.619 5.619 16 C 0.534 3.466 17 O -0.511 6.511 18 C -0.149 4.149 19 S -0.061 6.061 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 C 0.106 3.894 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.400 0.600 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.268 0.732 44 H 0.097 0.903 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.351 -16.002 -2.939 29.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.141 4.141 3 H 0.137 0.863 4 C -0.186 4.186 5 C -0.214 4.214 6 H 0.140 0.860 7 C 0.326 3.674 8 O -0.402 6.402 9 N -0.374 5.374 10 C 0.025 3.975 11 H 0.112 0.888 12 C -0.162 4.162 13 C -0.171 4.171 14 C -0.018 4.018 15 N -0.356 5.356 16 C 0.322 3.678 17 O -0.384 6.384 18 C -0.300 4.300 19 S 0.166 5.834 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 C -0.019 4.019 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.234 0.766 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.111 0.889 40 H 0.086 0.914 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.115 0.885 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -24.277 -14.015 -1.321 28.063 hybrid contribution 1.098 -1.393 -2.030 2.695 sum -23.179 -15.408 -3.351 28.034 Atomic orbital electron populations 1.21402 0.92203 1.02250 1.02167 1.22415 0.95209 0.95272 1.01250 0.86324 1.23137 1.03351 1.01510 0.90601 1.22293 0.97673 1.05497 0.95894 0.85996 1.19748 0.84618 0.84823 0.78242 1.90783 1.68330 1.20957 1.60126 1.45892 1.24117 1.13382 1.54036 1.21346 0.82841 1.00884 0.92384 0.88845 1.21801 0.98628 0.98979 0.96818 1.21908 0.93894 1.03164 0.98139 1.21757 0.98807 0.95426 0.85826 1.48031 1.18970 1.38879 1.29690 1.20374 0.84568 0.78289 0.84576 1.90711 1.76577 1.44912 1.26237 1.23550 0.96677 1.06385 1.03356 1.85465 1.16985 1.42259 1.38705 1.22855 1.04694 1.25281 1.15474 0.90946 1.24996 0.98298 0.94630 0.95710 1.70018 1.32740 1.20690 1.26779 0.86168 0.80897 0.78494 0.79931 1.20278 1.20769 1.19709 1.21813 0.82384 1.02372 0.95290 0.92394 0.91572 0.91980 0.87758 0.88039 0.76572 0.91146 0.91010 0.90850 0.90002 0.88893 0.91380 0.89254 0.89226 0.92187 0.88476 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 10.19 37.16 0.38 -0.35 16 2 C -0.12 -1.03 5.92 -90.58 -0.54 -1.56 16 3 H 0.12 1.27 7.67 -51.93 -0.40 0.87 16 4 C -0.15 -1.11 9.88 -26.69 -0.26 -1.37 16 5 C -0.19 -1.53 5.91 -91.77 -0.54 -2.08 16 6 H 0.12 0.65 8.14 -51.93 -0.42 0.22 16 7 C 0.54 6.18 7.58 -10.99 -0.08 6.09 16 8 O -0.53 -8.77 15.92 5.56 0.09 -8.69 16 9 N -0.72 -6.38 5.08 -53.69 -0.27 -6.65 16 10 C 0.13 1.41 2.60 -67.81 -0.18 1.24 16 11 H 0.09 1.32 7.58 -51.93 -0.39 0.92 16 12 C -0.12 -0.92 5.36 -26.66 -0.14 -1.06 16 13 C -0.13 -1.09 6.08 -26.58 -0.16 -1.26 16 14 C 0.11 1.11 6.34 -3.71 -0.02 1.09 16 15 N -0.62 -9.19 2.97 -172.77 -0.51 -9.70 16 16 C 0.53 10.73 7.72 -10.98 -0.08 10.64 16 17 O -0.51 -12.52 15.27 5.56 0.08 -12.43 16 18 C -0.15 -3.11 4.50 36.01 0.16 -2.95 16 19 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 20 C -0.53 -15.40 9.50 30.94 0.29 -15.11 16 21 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.53 13.22 55.49 0.73 -25.80 16 24 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 C 0.11 1.43 6.01 -3.71 -0.02 1.41 16 29 H 0.06 0.27 7.90 -51.93 -0.41 -0.14 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.10 0.54 8.05 -51.93 -0.42 0.13 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.40 2.12 8.60 -40.82 -0.35 1.77 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.09 1.01 5.93 -51.93 -0.31 0.71 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.09 1.70 7.94 -51.92 -0.41 1.29 16 42 H 0.09 1.72 7.69 -51.91 -0.40 1.32 16 43 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.10 1.70 7.01 -51.93 -0.36 1.34 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 382.91 15.07 5.77 5.77 Total: -1.00 -37.65 382.91 -9.87 -47.52 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -7.23 Total: 0.57 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -1.30 Total: -3.26 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: -0.05 Total: -42.15 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: 0.17 Total: -21.12 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.65 -9.87 -47.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070454450.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.245 kcal (2) G-P(sol) polarization free energy of solvation -37.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds