Wall clock time and date at job start Tue Mar 31 2020 14:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 115.54765 * 2 1 4 4 C 1.52996 * 117.51918 * 214.30307 * 2 1 3 5 5 C 1.52994 * 117.50215 * 145.67042 * 2 1 3 6 6 H 1.08998 * 117.49785 * 0.02562 * 5 2 1 7 7 C 1.50701 * 117.50319 * 215.00332 * 5 2 1 8 8 O 1.21279 * 119.99783 * 359.97438 * 7 5 2 9 9 N 1.34771 * 120.00324 * 180.02562 * 7 5 2 10 10 C 1.46929 * 120.62962 * 0.02562 * 9 7 5 11 11 C 1.53193 * 108.77093 * 233.61175 * 10 9 7 12 12 C 1.53041 * 109.31377 * 305.36213 * 11 10 9 13 13 C 1.53034 * 109.53976 * 61.36817 * 12 11 10 14 14 H 1.09005 * 109.49941 * 58.61691 * 13 12 11 15 15 N 1.46497 * 109.49965 * 178.68659 * 13 12 11 16 16 C 1.34777 * 119.99525 * 274.93110 * 15 13 12 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 13 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 13 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99674 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00584 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46793 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47282 * 119.99523 * 24 22 20 27 27 H 1.48500 * 109.47237 * 240.00020 * 24 22 20 28 28 C 1.46930 * 120.60616 * 180.02562 * 9 7 5 29 29 H 1.09001 * 109.47320 * 274.32862 * 1 2 3 30 30 H 1.09000 * 109.47087 * 34.32824 * 1 2 3 31 31 H 1.09001 * 109.46876 * 154.32924 * 1 2 3 32 32 H 1.09004 * 117.50144 * 145.02431 * 4 2 1 33 33 H 1.09001 * 117.50312 * 0.02562 * 4 2 1 34 34 H 1.08995 * 109.59098 * 113.82244 * 10 9 7 35 35 H 1.09000 * 109.70303 * 353.46313 * 10 9 7 36 36 H 1.09007 * 109.49429 * 185.41421 * 11 10 9 37 37 H 1.08998 * 109.52426 * 65.33252 * 11 10 9 38 38 H 1.08996 * 109.45711 * 301.34646 * 12 11 10 39 39 H 1.09001 * 109.46280 * 181.39045 * 12 11 10 40 40 H 0.97000 * 120.00580 * 94.93856 * 15 13 12 41 41 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 42 42 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 43 43 H 0.97003 * 120.00297 * 179.97438 * 23 22 20 44 44 H 1.09001 * 109.61777 * 6.61441 * 28 9 7 45 45 H 1.09007 * 109.56109 * 246.18944 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2369 -1.1209 -0.7647 5 6 2.2365 -1.1207 0.7653 6 1 1.6113 -1.8582 1.2685 7 6 3.5290 -0.7805 1.4615 8 8 3.9715 0.3471 1.4015 9 7 4.1938 -1.7295 2.1499 10 6 3.6712 -3.1003 2.2302 11 6 3.5759 -3.5059 3.7044 12 6 4.9396 -3.3130 4.3717 13 6 5.3395 -1.8375 4.3017 14 1 4.5816 -1.2312 4.7978 15 7 6.6303 -1.6486 4.9682 16 6 6.6791 -1.4633 6.3022 17 8 5.6544 -1.4535 6.9510 18 6 8.0074 -1.2751 6.9887 19 16 7.7427 -1.0601 8.7663 20 6 9.4099 -0.8676 9.3029 21 1 10.2159 -0.9030 8.5847 22 6 9.6876 -0.6694 10.6483 23 7 8.7053 -0.6248 11.5234 24 14 11.4551 -0.4646 11.2170 25 1 12.3650 -0.5531 10.0467 26 1 11.6148 0.8597 11.8697 27 1 11.7907 -1.5381 12.1866 28 6 5.4548 -1.4122 2.8341 29 1 -0.3634 0.0776 1.0247 30 1 -0.3633 0.8487 -0.5795 31 1 -0.3633 -0.9263 -0.4452 32 1 3.1721 -0.8749 -1.2678 33 1 1.6120 -1.8584 -1.2684 34 1 4.3445 -3.7794 1.7072 35 1 2.6819 -3.1438 1.7746 36 1 3.2810 -4.5530 3.7753 37 1 2.8342 -2.8843 4.2060 38 1 5.6855 -3.9164 3.8544 39 1 4.8809 -3.6242 5.4146 40 1 7.4499 -1.6567 4.4494 41 1 8.6322 -2.1519 6.8179 42 1 8.5028 -0.3918 6.5858 43 1 8.8993 -0.4867 12.4637 44 1 5.6419 -0.3399 2.7778 45 1 6.2735 -1.9535 2.3598 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071074276.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:35 Heat of formation + Delta-G solvation = -55.184728 kcal Electronic energy + Delta-G solvation = -24944.438318 eV Core-core repulsion = 21281.540466 eV Total energy + Delta-G solvation = -3662.897853 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.81694 -39.43617 -37.94602 -36.80003 -34.55964 -32.55082 -32.42914 -30.86361 -29.27018 -28.37369 -26.18023 -25.49338 -24.08100 -23.05723 -21.46115 -20.75159 -20.39540 -19.10865 -17.90486 -17.76784 -16.55894 -16.32921 -16.15159 -15.27003 -15.06834 -14.80700 -14.79834 -14.54400 -14.38845 -14.05532 -13.99041 -13.62278 -13.32969 -13.18644 -13.09257 -12.93772 -12.53741 -12.45736 -12.06728 -11.84372 -11.70490 -11.38929 -11.14845 -11.08518 -11.05218 -11.01650 -10.78480 -10.75580 -10.43890 -10.07903 -9.81025 -9.42652 -9.13228 -9.06994 -8.82847 -8.23570 -6.50201 -6.21989 -3.92437 2.15413 2.46701 3.05380 3.08628 3.21593 3.28521 3.33122 3.39784 3.71857 4.01551 4.20135 4.29858 4.33585 4.46673 4.55452 4.60856 4.66792 4.72992 4.91018 4.95223 5.08843 5.13323 5.17801 5.19210 5.26195 5.28285 5.35399 5.41162 5.45144 5.49573 5.61133 5.65644 5.68108 5.75045 5.88342 5.90474 6.00832 6.08418 6.10112 6.14206 6.61040 7.03125 7.59785 7.66926 7.86567 8.35307 8.58781 9.23525 10.85494 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.030309 B = 0.002042 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.604484 B =13708.220362 C =13884.572551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 H 0.117 0.883 4 C -0.148 4.148 5 C -0.193 4.193 6 H 0.126 0.874 7 C 0.546 3.454 8 O -0.538 6.538 9 N -0.605 5.605 10 C 0.106 3.894 11 C -0.134 4.134 12 C -0.132 4.132 13 C 0.135 3.865 14 H 0.091 0.909 15 N -0.734 5.734 16 C 0.535 3.465 17 O -0.515 6.515 18 C -0.153 4.153 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 C 0.107 3.893 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.398 0.602 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.268 0.732 44 H 0.099 0.901 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.023 -6.530 -26.360 30.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.140 4.140 3 H 0.136 0.864 4 C -0.185 4.185 5 C -0.214 4.214 6 H 0.144 0.856 7 C 0.335 3.665 8 O -0.415 6.415 9 N -0.338 5.338 10 C -0.017 4.017 11 C -0.172 4.172 12 C -0.171 4.171 13 C 0.029 3.971 14 H 0.109 0.891 15 N -0.388 5.388 16 C 0.321 3.679 17 O -0.389 6.389 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.137 4.137 23 N -0.503 5.503 24 Si 0.746 3.254 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 C -0.017 4.017 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.117 0.883 33 H 0.123 0.877 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.117 0.883 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.549 -5.876 -25.107 29.606 hybrid contribution 2.804 -0.113 -0.437 2.840 sum -11.745 -5.989 -25.543 28.745 Atomic orbital electron populations 1.21408 0.92080 1.02255 1.02387 1.22402 0.95349 0.95129 1.01130 0.86449 1.23105 1.03179 1.01676 0.90559 1.22329 0.97723 1.05548 0.95780 0.85620 1.19695 0.84529 0.84159 0.78155 1.90708 1.68463 1.20788 1.61517 1.47894 1.23860 1.10536 1.51547 1.21866 1.00169 0.82194 0.97470 1.21916 0.98218 1.02340 0.94774 1.21950 0.96547 0.96220 1.02369 1.21158 0.87292 0.96753 0.91909 0.89054 1.45947 1.08582 1.76199 1.08073 1.20318 0.91355 0.74999 0.81213 1.90703 1.35711 1.48290 1.64161 1.23535 0.96620 1.04842 1.05402 1.85400 1.11646 1.94408 0.91919 1.22910 0.92335 1.57350 0.95711 0.90858 1.25001 0.98445 0.94625 0.95579 1.70030 1.31359 1.46345 1.02551 0.86109 0.82691 0.77968 0.78676 1.19615 1.20559 1.20574 1.21785 0.85556 1.03313 0.91020 0.91798 0.91577 0.92331 0.88289 0.87705 0.90980 0.89293 0.90100 0.91007 0.91546 0.90407 0.76777 0.89165 0.89149 0.92237 0.88255 0.90936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 10.19 37.16 0.38 -0.29 16 2 C -0.12 -0.90 5.92 -90.63 -0.54 -1.44 16 3 H 0.12 1.09 7.67 -51.93 -0.40 0.69 16 4 C -0.15 -0.90 9.88 -26.73 -0.26 -1.16 16 5 C -0.19 -1.46 4.85 -91.77 -0.44 -1.90 16 6 H 0.13 0.71 6.57 -51.93 -0.34 0.37 16 7 C 0.55 5.99 7.48 -10.99 -0.08 5.91 16 8 O -0.54 -8.03 15.67 5.56 0.09 -7.94 16 9 N -0.61 -5.67 2.97 -172.74 -0.51 -6.19 16 10 C 0.11 0.67 6.34 -3.71 -0.02 0.65 16 11 C -0.13 -1.02 6.08 -26.61 -0.16 -1.18 16 12 C -0.13 -1.35 5.46 -26.69 -0.15 -1.50 16 13 C 0.14 1.62 2.60 -67.79 -0.18 1.44 16 14 H 0.09 1.38 7.58 -51.93 -0.39 0.98 16 15 N -0.73 -9.68 5.08 -53.67 -0.27 -9.95 16 16 C 0.53 9.90 7.81 -10.98 -0.09 9.81 16 17 O -0.51 -11.61 15.53 5.55 0.09 -11.52 16 18 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 20 C -0.53 -15.28 9.50 30.94 0.29 -14.99 16 21 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 24 Si 0.92 21.50 29.55 -169.99 -5.02 16.47 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 C 0.11 1.08 5.91 -3.69 -0.02 1.06 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.24 7.90 -51.93 -0.41 -0.17 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.10 0.42 8.05 -51.93 -0.42 0.00 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.09 0.40 5.52 -51.93 -0.29 0.12 16 36 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.40 4.03 8.60 -40.82 -0.35 3.68 16 41 H 0.09 1.66 8.14 -51.91 -0.42 1.23 16 42 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 43 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.10 1.21 7.01 -51.93 -0.36 0.84 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 382.16 15.07 5.76 5.76 Total: -1.00 -36.39 382.16 -9.66 -46.04 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -7.16 Total: 1.15 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -1.14 Total: -4.45 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: -0.05 Total: -41.66 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: 0.17 Total: -19.46 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.39 -9.66 -46.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071074276.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.140 kcal (2) G-P(sol) polarization free energy of solvation -36.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds