Wall clock time and date at job start Tue Mar 31 2020 14:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 115.54765 * 2 1 4 4 C 1.52996 * 117.51918 * 214.30307 * 2 1 3 5 5 C 1.52994 * 117.50215 * 145.67042 * 2 1 3 6 6 H 1.08998 * 117.49785 * 0.02562 * 5 2 1 7 7 C 1.50701 * 117.50319 * 215.00332 * 5 2 1 8 8 O 1.21279 * 119.99783 * 359.97438 * 7 5 2 9 9 N 1.34771 * 120.00324 * 180.02562 * 7 5 2 10 10 C 1.46929 * 120.62962 * 0.02562 * 9 7 5 11 11 C 1.53193 * 108.77093 * 233.61175 * 10 9 7 12 12 C 1.53041 * 109.31377 * 305.36213 * 11 10 9 13 13 C 1.53034 * 109.53976 * 61.36817 * 12 11 10 14 14 H 1.09005 * 109.49941 * 58.61691 * 13 12 11 15 15 N 1.46497 * 109.49965 * 178.68659 * 13 12 11 16 16 C 1.34777 * 119.99525 * 274.93110 * 15 13 12 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 13 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 13 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99674 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00584 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46793 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47282 * 119.99523 * 24 22 20 27 27 H 1.48500 * 109.47237 * 240.00020 * 24 22 20 28 28 C 1.46930 * 120.60616 * 180.02562 * 9 7 5 29 29 H 1.09001 * 109.47320 * 274.32862 * 1 2 3 30 30 H 1.09000 * 109.47087 * 34.32824 * 1 2 3 31 31 H 1.09001 * 109.46876 * 154.32924 * 1 2 3 32 32 H 1.09004 * 117.50144 * 145.02431 * 4 2 1 33 33 H 1.09001 * 117.50312 * 0.02562 * 4 2 1 34 34 H 1.08995 * 109.59098 * 113.82244 * 10 9 7 35 35 H 1.09000 * 109.70303 * 353.46313 * 10 9 7 36 36 H 1.09007 * 109.49429 * 185.41421 * 11 10 9 37 37 H 1.08998 * 109.52426 * 65.33252 * 11 10 9 38 38 H 1.08996 * 109.45711 * 301.34646 * 12 11 10 39 39 H 1.09001 * 109.46280 * 181.39045 * 12 11 10 40 40 H 0.97000 * 120.00580 * 94.93856 * 15 13 12 41 41 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 42 42 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 43 43 H 0.97003 * 120.00297 * 179.97438 * 23 22 20 44 44 H 1.09001 * 109.61777 * 6.61441 * 28 9 7 45 45 H 1.09007 * 109.56109 * 246.18944 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2369 -1.1209 -0.7647 5 6 2.2365 -1.1207 0.7653 6 1 1.6113 -1.8582 1.2685 7 6 3.5290 -0.7805 1.4615 8 8 3.9715 0.3471 1.4015 9 7 4.1938 -1.7295 2.1499 10 6 3.6712 -3.1003 2.2302 11 6 3.5759 -3.5059 3.7044 12 6 4.9396 -3.3130 4.3717 13 6 5.3395 -1.8375 4.3017 14 1 4.5816 -1.2312 4.7978 15 7 6.6303 -1.6486 4.9682 16 6 6.6791 -1.4633 6.3022 17 8 5.6544 -1.4535 6.9510 18 6 8.0074 -1.2751 6.9887 19 16 7.7427 -1.0601 8.7663 20 6 9.4099 -0.8676 9.3029 21 1 10.2159 -0.9030 8.5847 22 6 9.6876 -0.6694 10.6483 23 7 8.7053 -0.6248 11.5234 24 14 11.4551 -0.4646 11.2170 25 1 12.3650 -0.5531 10.0467 26 1 11.6148 0.8597 11.8697 27 1 11.7907 -1.5381 12.1866 28 6 5.4548 -1.4122 2.8341 29 1 -0.3634 0.0776 1.0247 30 1 -0.3633 0.8487 -0.5795 31 1 -0.3633 -0.9263 -0.4452 32 1 3.1721 -0.8749 -1.2678 33 1 1.6120 -1.8584 -1.2684 34 1 4.3445 -3.7794 1.7072 35 1 2.6819 -3.1438 1.7746 36 1 3.2810 -4.5530 3.7753 37 1 2.8342 -2.8843 4.2060 38 1 5.6855 -3.9164 3.8544 39 1 4.8809 -3.6242 5.4146 40 1 7.4499 -1.6567 4.4494 41 1 8.6322 -2.1519 6.8179 42 1 8.5028 -0.3918 6.5858 43 1 8.8993 -0.4867 12.4637 44 1 5.6419 -0.3399 2.7778 45 1 6.2735 -1.9535 2.3598 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071074276.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:35 Heat of formation + Delta-G solvation = -80.283568 kcal Electronic energy + Delta-G solvation = -24945.526686 eV Core-core repulsion = 21281.540466 eV Total energy + Delta-G solvation = -3663.986220 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.65978 -40.69708 -38.84690 -37.56114 -35.72753 -34.59907 -33.42341 -32.01037 -30.14059 -29.35882 -27.67825 -26.91634 -24.83770 -23.82079 -22.22155 -21.70212 -21.45425 -19.99298 -19.71586 -18.54575 -17.95014 -17.41579 -17.11916 -16.89568 -16.49778 -16.20055 -15.83406 -15.50182 -15.37122 -15.08169 -14.86275 -14.75833 -14.51650 -14.15306 -14.03053 -13.75013 -13.64702 -13.54235 -13.17636 -12.93386 -12.92006 -12.61605 -12.52039 -12.35054 -12.17605 -12.00868 -11.89541 -11.72581 -11.34476 -11.17260 -11.07505 -10.94474 -10.81343 -10.29341 -10.24642 -9.73753 -8.68656 -8.36310 -6.14525 1.22100 1.36725 1.40496 1.45271 1.55518 1.56550 1.77955 2.25465 2.35295 2.82897 2.97934 3.29653 3.38003 3.60711 3.74789 3.75663 3.86096 3.91279 3.92786 4.03016 4.13175 4.20139 4.28192 4.42247 4.47607 4.48446 4.54382 4.66894 4.67674 4.79447 4.85135 4.88062 4.94863 5.00279 5.07487 5.15047 5.20996 5.22663 5.34350 5.40819 5.41968 5.51060 6.18662 6.28745 6.44858 7.05078 7.06191 7.19763 8.73207 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.030309 B = 0.002042 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.604484 B =13708.220362 C =13884.572551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.137 4.137 3 H 0.087 0.913 4 C -0.126 4.126 5 C -0.196 4.196 6 H 0.152 0.848 7 C 0.536 3.464 8 O -0.590 6.590 9 N -0.604 5.604 10 C 0.105 3.895 11 C -0.129 4.129 12 C -0.128 4.128 13 C 0.137 3.863 14 H 0.053 0.947 15 N -0.708 5.708 16 C 0.537 3.463 17 O -0.563 6.563 18 C -0.129 4.129 19 S -0.152 6.152 20 C -0.545 4.545 21 H 0.083 0.917 22 C 0.012 3.988 23 N -0.912 5.912 24 Si 1.000 3.000 25 H -0.256 1.256 26 H -0.275 1.275 27 H -0.273 1.273 28 C 0.113 3.887 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.137 0.863 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.107 0.893 37 H 0.053 0.947 38 H 0.091 0.909 39 H 0.045 0.955 40 H 0.418 0.582 41 H 0.114 0.886 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.074 0.926 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.273 -8.656 -29.146 32.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.156 4.156 3 H 0.105 0.895 4 C -0.163 4.163 5 C -0.217 4.217 6 H 0.169 0.831 7 C 0.326 3.674 8 O -0.471 6.471 9 N -0.335 5.335 10 C -0.016 4.016 11 C -0.168 4.168 12 C -0.166 4.166 13 C 0.032 3.968 14 H 0.071 0.929 15 N -0.363 5.363 16 C 0.323 3.677 17 O -0.441 6.441 18 C -0.280 4.280 19 S 0.075 5.925 20 C -0.693 4.693 21 H 0.102 0.898 22 C -0.193 4.193 23 N -0.548 5.548 24 Si 0.822 3.178 25 H -0.180 1.180 26 H -0.200 1.200 27 H -0.198 1.198 28 C -0.010 4.010 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.155 0.845 34 H 0.116 0.884 35 H 0.133 0.867 36 H 0.125 0.875 37 H 0.072 0.928 38 H 0.109 0.891 39 H 0.064 0.936 40 H 0.255 0.745 41 H 0.132 0.868 42 H 0.127 0.873 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.792 -8.044 -27.953 32.192 hybrid contribution 2.526 0.550 0.331 2.606 sum -11.266 -7.494 -27.623 30.759 Atomic orbital electron populations 1.21392 0.90376 1.03478 1.02351 1.22417 0.96627 0.94189 1.02374 0.89455 1.23201 1.02819 1.01050 0.89269 1.22391 0.96214 1.06275 0.96791 0.83051 1.20388 0.85391 0.83577 0.78014 1.90683 1.69921 1.22962 1.63537 1.48047 1.23320 1.11680 1.50496 1.22139 1.02214 0.80529 0.96698 1.21913 0.95898 1.03667 0.95279 1.21909 0.99047 0.94529 1.01153 1.21218 0.85349 0.97802 0.92481 0.92915 1.45667 1.10297 1.73982 1.06315 1.20075 0.90011 0.74962 0.82657 1.90693 1.36909 1.50877 1.65628 1.23370 0.98085 1.06665 0.99891 1.85591 1.13153 1.94843 0.98928 1.23240 0.92332 1.57322 0.96422 0.89845 1.26153 1.03600 0.93905 0.95629 1.70193 1.34144 1.47444 1.03027 0.84885 0.76392 0.78041 0.78496 1.17990 1.20022 1.19811 1.21652 0.87278 1.02278 0.89840 0.92314 0.91363 0.90257 0.89251 0.84535 0.88370 0.86738 0.87462 0.92824 0.89073 0.93615 0.74481 0.86808 0.87348 0.91988 0.90739 0.87817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 10.19 71.98 0.73 -0.35 16 2 C -0.14 -1.92 5.92 -10.80 -0.06 -1.99 16 3 H 0.09 1.75 7.67 -2.39 -0.02 1.73 16 4 C -0.13 -1.21 9.88 30.59 0.30 -0.91 16 5 C -0.20 -2.60 4.85 -11.54 -0.06 -2.65 16 6 H 0.15 1.18 6.57 -2.39 -0.02 1.16 16 7 C 0.54 11.50 7.48 87.66 0.66 12.15 16 8 O -0.59 -18.40 15.67 -3.03 -0.05 -18.45 16 9 N -0.60 -10.35 2.97 -818.81 -2.43 -12.79 16 10 C 0.11 0.97 6.34 86.36 0.55 1.51 16 11 C -0.13 -1.67 6.08 30.67 0.19 -1.48 16 12 C -0.13 -2.44 5.46 30.62 0.17 -2.27 16 13 C 0.14 3.26 2.60 45.08 0.12 3.37 16 14 H 0.05 1.69 7.58 -2.38 -0.02 1.67 16 15 N -0.71 -18.19 5.08 -442.11 -2.25 -20.43 16 16 C 0.54 20.12 7.81 87.66 0.68 20.81 16 17 O -0.56 -26.62 15.53 -3.04 -0.05 -26.67 16 18 C -0.13 -5.14 6.16 71.24 0.44 -4.71 16 19 S -0.15 -8.56 20.57 -56.49 -1.16 -9.72 16 20 C -0.55 -31.39 9.50 67.95 0.65 -30.74 16 21 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 22 C 0.01 0.67 5.49 84.86 0.47 1.14 16 23 N -0.91 -56.48 13.22 21.65 0.29 -56.19 16 24 Si 1.00 43.94 29.55 68.60 2.03 45.97 16 25 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 26 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 27 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 28 C 0.11 2.18 5.91 86.38 0.51 2.69 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.08 0.40 7.90 -2.39 -0.02 0.38 16 32 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.14 0.47 8.05 -2.39 -0.02 0.45 16 34 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.11 0.52 5.52 -2.39 -0.01 0.51 16 36 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.42 7.54 8.60 -92.71 -0.80 6.74 16 41 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 42 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 43 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 44 H 0.07 1.85 7.01 -2.39 -0.02 1.83 16 45 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 Total: -1.00 -85.50 382.16 1.91 -83.60 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: 0.20 Total: 18.10 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: 5.34 Total: -3.42 kcal Atomic # 7 Polarization: -85.02 SS G_CDS: -4.39 Total: -89.41 kcal Atomic # 8 Polarization: -45.02 SS G_CDS: -0.09 Total: -45.12 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.72 kcal Total: -85.50 1.91 -83.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071074276.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.312 kcal (2) G-P(sol) polarization free energy of solvation -85.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds