Wall clock time and date at job start Tue Mar 31 2020 14:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09006 * 110.91421 * 2 1 4 4 C 1.55130 * 110.90729 * 124.07179 * 2 1 3 5 5 N 1.47423 * 104.72519 * 155.28125 * 4 2 1 6 6 C 1.34777 * 125.65100 * 155.82132 * 5 4 2 7 7 O 1.21274 * 120.00135 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99766 * 179.71255 * 6 5 4 9 9 C 1.53781 * 113.61383 * 279.13403 * 8 6 5 10 10 C 1.53957 * 87.01759 * 220.05254 * 9 8 6 11 11 C 1.53783 * 87.11454 * 25.36149 * 10 9 8 12 12 C 1.47030 * 108.70203 * 335.54900 * 5 4 2 13 13 C 1.54323 * 107.26779 * 1.29350 * 12 5 4 14 14 H 1.08997 * 110.72122 * 140.55887 * 13 12 5 15 15 N 1.46508 * 110.71753 * 263.64700 * 13 12 5 16 16 C 1.34771 * 120.00021 * 273.54743 * 15 13 12 17 17 O 1.21274 * 120.00156 * 359.97438 * 16 15 13 18 18 C 1.50702 * 119.99928 * 180.02562 * 16 15 13 19 19 S 1.81002 * 109.47281 * 180.02562 * 18 16 15 20 20 C 1.76197 * 99.99972 * 179.97438 * 19 18 16 21 21 H 1.08004 * 120.00050 * 359.97438 * 20 19 18 22 22 C 1.38804 * 120.00022 * 179.97438 * 20 19 18 23 23 N 1.31631 * 119.99774 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00106 * 180.02562 * 22 20 19 25 25 H 1.48490 * 109.47224 * 90.00000 * 24 22 20 26 26 H 1.48496 * 109.46944 * 210.00293 * 24 22 20 27 27 H 1.48500 * 109.46957 * 329.99779 * 24 22 20 28 28 H 1.09002 * 109.46966 * 183.89818 * 1 2 3 29 29 H 1.08992 * 109.47710 * 303.90114 * 1 2 3 30 30 H 1.09003 * 109.47285 * 63.90766 * 1 2 3 31 31 H 1.08997 * 110.49580 * 36.43510 * 4 2 1 32 32 H 1.09002 * 110.34441 * 274.04293 * 4 2 1 33 33 H 1.09001 * 112.84823 * 50.33357 * 8 6 5 34 34 H 1.08998 * 113.61545 * 334.56772 * 9 8 6 35 35 H 1.08993 * 113.61303 * 105.47229 * 9 8 6 36 36 H 1.09004 * 113.53215 * 270.81277 * 10 9 8 37 37 H 1.08992 * 113.74465 * 139.94517 * 10 9 8 38 38 H 1.08997 * 113.61737 * 220.09125 * 11 10 9 39 39 H 1.09000 * 113.61138 * 89.18266 * 11 10 9 40 40 H 1.08994 * 109.88106 * 120.70296 * 12 5 4 41 41 H 1.08991 * 109.88401 * 241.71922 * 12 5 4 42 42 H 0.97003 * 119.99484 * 93.54932 * 15 13 12 43 43 H 1.09005 * 109.46667 * 300.00170 * 18 16 15 44 44 H 1.08996 * 109.47542 * 59.99625 * 18 16 15 45 45 H 0.97000 * 119.99774 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0835 -0.8119 1.2004 5 7 3.4271 -1.2429 0.7735 6 6 4.4476 -1.5614 1.5942 7 8 4.2993 -1.5044 2.7965 8 6 5.7712 -1.9941 1.0179 9 6 5.8040 -3.4713 0.5915 10 6 7.2300 -3.5231 1.1694 11 6 6.8180 -2.3576 2.0842 12 6 3.4675 -1.2741 -0.6959 13 6 2.0862 -0.8079 -1.2022 14 1 2.1922 -0.1700 -2.0796 15 7 1.2284 -1.9576 -1.5002 16 6 1.2840 -2.5436 -2.7125 17 8 2.0439 -2.1190 -3.5570 18 6 0.4012 -3.7258 -3.0192 19 16 0.7068 -4.2835 -4.7138 20 6 -0.4228 -5.6330 -4.8002 21 1 -1.0348 -5.8805 -3.9454 22 6 -0.5261 -6.3780 -5.9668 23 7 0.2201 -6.0767 -7.0084 24 14 -1.7242 -7.8083 -6.0586 25 1 -3.0393 -7.3218 -6.5472 26 1 -1.1980 -8.8355 -6.9929 27 1 -1.8875 -8.4046 -4.7084 28 1 -0.3633 -1.0253 0.0699 29 1 -0.3634 0.5731 0.8529 30 1 -0.3634 0.4520 -0.9229 31 1 1.4524 -1.6781 1.3988 32 1 2.1514 -0.1801 2.0861 33 1 6.1442 -1.3109 0.2549 34 1 5.0919 -4.0970 1.1295 35 1 5.7640 -3.6150 -0.4882 36 1 8.0023 -3.2590 0.4469 37 1 7.4519 -4.4439 1.7086 38 1 7.5954 -1.6036 2.2078 39 1 6.3835 -2.6783 3.0310 40 1 4.2426 -0.5997 -1.0598 41 1 3.6678 -2.2888 -1.0398 42 1 0.6203 -2.2969 -0.8248 43 1 0.6243 -4.5357 -2.3247 44 1 -0.6442 -3.4354 -2.9149 45 1 0.1476 -6.5971 -7.8237 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071436327.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:03 Heat of formation + Delta-G solvation = -77.212552 kcal Electronic energy + Delta-G solvation = -25577.058577 eV Core-core repulsion = 21913.205526 eV Total energy + Delta-G solvation = -3663.853051 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.80428 -40.74160 -39.21828 -38.03730 -35.21229 -34.57265 -33.46514 -31.30073 -29.34064 -28.75827 -27.63400 -26.68882 -26.31452 -24.16345 -22.24325 -21.17752 -21.06807 -19.87373 -19.85793 -18.51291 -17.86489 -17.64877 -16.86972 -16.81309 -16.69068 -16.31815 -16.27179 -15.73290 -15.39636 -14.82667 -14.70680 -14.55348 -14.43790 -13.93103 -13.66266 -13.55211 -13.48913 -13.39667 -13.16281 -13.13350 -12.98842 -12.88924 -12.62800 -12.41526 -12.19244 -11.99060 -11.76934 -11.66217 -11.49360 -11.36256 -11.13464 -10.95178 -10.80233 -10.26117 -10.20721 -9.74963 -8.63926 -8.34037 -6.10816 1.27770 1.42498 1.47329 1.49630 1.57593 1.61121 1.89584 2.24278 2.29692 3.00331 3.18035 3.32899 3.45859 3.52191 3.59599 3.68812 3.83233 3.86857 3.97568 4.05800 4.19510 4.25584 4.32790 4.45164 4.52818 4.56456 4.62528 4.69241 4.72884 4.74708 4.78346 4.81554 4.97178 5.02721 5.04048 5.11196 5.12870 5.17727 5.37870 5.43055 5.46680 5.47653 6.20627 6.37755 6.46344 7.04953 7.07951 7.22816 8.74885 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.014031 B = 0.002836 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.162044 B = 9870.233182 C =11052.149850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.091 4.091 3 H 0.115 0.885 4 C 0.102 3.898 5 N -0.614 5.614 6 C 0.534 3.466 7 O -0.582 6.582 8 C -0.136 4.136 9 C -0.126 4.126 10 C -0.131 4.131 11 C -0.118 4.118 12 C 0.092 3.908 13 C 0.138 3.862 14 H 0.106 0.894 15 N -0.704 5.704 16 C 0.541 3.459 17 O -0.555 6.555 18 C -0.133 4.133 19 S -0.143 6.143 20 C -0.547 4.547 21 H 0.081 0.919 22 C 0.015 3.985 23 N -0.910 5.910 24 Si 0.995 3.005 25 H -0.268 1.268 26 H -0.278 1.278 27 H -0.260 1.260 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.130 0.870 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.064 0.936 42 H 0.412 0.588 43 H 0.105 0.895 44 H 0.109 0.891 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.351 11.600 18.489 22.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 H 0.133 0.867 4 C -0.020 4.020 5 N -0.347 5.347 6 C 0.325 3.675 7 O -0.463 6.463 8 C -0.156 4.156 9 C -0.164 4.164 10 C -0.168 4.168 11 C -0.156 4.156 12 C -0.032 4.032 13 C 0.032 3.968 14 H 0.124 0.876 15 N -0.359 5.359 16 C 0.327 3.673 17 O -0.433 6.433 18 C -0.284 4.284 19 S 0.084 5.916 20 C -0.695 4.695 21 H 0.099 0.901 22 C -0.190 4.190 23 N -0.546 5.546 24 Si 0.817 3.183 25 H -0.193 1.193 26 H -0.204 1.204 27 H -0.184 1.184 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.148 0.852 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.118 0.882 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.112 0.888 41 H 0.082 0.918 42 H 0.250 0.750 43 H 0.123 0.877 44 H 0.127 0.873 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.644 12.283 17.610 22.791 hybrid contribution -1.744 -1.547 0.798 2.464 sum 5.900 10.736 18.408 22.112 Atomic orbital electron populations 1.21679 0.91942 1.02865 1.03379 1.22666 0.97811 0.99591 0.91021 0.86664 1.22512 0.82627 0.98639 0.98234 1.48571 1.12492 1.66387 1.07232 1.20693 0.85702 0.75551 0.85602 1.90657 1.83982 1.55376 1.16241 1.22909 0.92102 0.99234 1.01399 1.22836 0.98701 0.93091 1.01768 1.22852 0.96005 0.98957 0.99012 1.22776 0.96983 0.98949 0.96879 1.22579 0.99092 1.02457 0.79052 1.21973 0.88390 0.87300 0.99160 0.87623 1.45798 1.43384 1.32708 1.14002 1.19935 0.82158 0.83221 0.81995 1.90700 1.40337 1.64424 1.47813 1.23389 1.03194 0.99219 1.02613 1.85499 1.55679 1.39361 1.11054 1.23205 1.26244 1.17231 1.02821 0.90101 1.26073 0.98069 1.00678 0.94179 1.70170 1.39750 1.40890 1.03818 0.84998 0.77730 0.76867 0.78684 1.19338 1.20376 1.18355 0.92009 0.90345 0.91627 0.91126 0.90331 0.85216 0.91175 0.90256 0.88177 0.90475 0.89756 0.90733 0.88782 0.91797 0.74959 0.87717 0.87255 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.85 71.98 0.64 -0.82 16 2 C -0.09 -1.13 3.53 -9.33 -0.03 -1.16 16 3 H 0.12 1.15 8.14 -2.38 -0.02 1.13 16 4 C 0.10 1.64 6.36 86.93 0.55 2.20 16 5 N -0.61 -11.97 3.32 -811.36 -2.70 -14.67 16 6 C 0.53 12.42 7.37 87.66 0.65 13.07 16 7 O -0.58 -17.67 16.16 -3.01 -0.05 -17.72 16 8 C -0.14 -2.43 3.34 -11.01 -0.04 -2.47 16 9 C -0.13 -2.24 7.64 31.18 0.24 -2.00 16 10 C -0.13 -1.88 8.09 31.18 0.25 -1.63 16 11 C -0.12 -2.00 7.40 31.12 0.23 -1.77 16 12 C 0.09 1.71 6.21 86.73 0.54 2.24 16 13 C 0.14 2.47 3.00 46.18 0.14 2.61 16 14 H 0.11 2.13 7.69 -2.39 -0.02 2.11 16 15 N -0.70 -15.06 4.57 -436.92 -2.00 -17.06 16 16 C 0.54 17.68 7.84 87.66 0.69 18.37 16 17 O -0.56 -22.83 15.59 -3.01 -0.05 -22.88 16 18 C -0.13 -4.91 6.16 71.24 0.44 -4.48 16 19 S -0.14 -7.61 20.57 -56.49 -1.16 -8.78 16 20 C -0.55 -30.48 9.50 67.96 0.65 -29.84 16 21 H 0.08 4.20 7.80 -2.91 -0.02 4.17 16 22 C 0.01 0.84 5.49 84.86 0.47 1.30 16 23 N -0.91 -54.80 13.22 21.65 0.29 -54.52 16 24 Si 1.00 42.86 29.55 68.60 2.03 44.89 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 26 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 27 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 28 H 0.06 0.62 6.39 -2.39 -0.02 0.61 16 29 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 31 H 0.07 1.12 7.99 -2.39 -0.02 1.10 16 32 H 0.08 1.35 8.04 -2.39 -0.02 1.33 16 33 H 0.13 1.84 8.12 -2.39 -0.02 1.82 16 34 H 0.07 1.43 8.09 -2.39 -0.02 1.41 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.07 1.56 7.45 -2.39 -0.02 1.54 16 40 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.06 1.43 8.05 -2.39 -0.02 1.41 16 42 H 0.41 6.80 6.92 -92.71 -0.64 6.16 16 43 H 0.10 3.55 8.14 -2.39 -0.02 3.53 16 44 H 0.11 3.62 8.14 -2.40 -0.02 3.61 16 45 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -76.59 381.37 2.11 -74.49 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: 0.34 Total: 20.62 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: 5.40 Total: -4.37 kcal Atomic # 7 Polarization: -81.84 SS G_CDS: -4.41 Total: -86.25 kcal Atomic # 8 Polarization: -40.50 SS G_CDS: -0.10 Total: -40.60 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: -7.61 SS G_CDS: -1.16 Total: -8.78 kcal Total: -76.59 2.11 -74.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071436327.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.725 kcal (2) G-P(sol) polarization free energy of solvation -76.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds