Wall clock time and date at job start Tue Mar 31 2020 14:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.77564 * 2 1 4 4 C 1.54322 * 110.71793 * 236.76371 * 2 1 3 5 5 N 1.47018 * 107.27313 * 219.44073 * 4 2 1 6 6 C 1.34776 * 125.65132 * 178.98549 * 5 4 2 7 7 O 1.21277 * 119.99891 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00010 * 180.02562 * 6 5 4 9 9 C 1.52990 * 109.47158 * 180.02562 * 8 6 5 10 10 C 1.53005 * 117.50085 * 243.62226 * 9 8 6 11 11 C 1.53002 * 117.49975 * 174.99895 * 9 8 6 12 12 C 1.47430 * 108.70172 * 358.94451 * 5 4 2 13 13 C 1.54912 * 104.83145 * 24.12303 * 12 5 4 14 14 H 1.08999 * 111.03601 * 81.08306 * 13 12 5 15 15 N 1.46496 * 111.00294 * 204.91872 * 13 12 5 16 16 C 1.34777 * 120.00271 * 267.19571 * 15 13 12 17 17 O 1.21278 * 119.99854 * 0.02562 * 16 15 13 18 18 C 1.50703 * 120.00161 * 180.02562 * 16 15 13 19 19 S 1.81002 * 109.47178 * 180.02562 * 18 16 15 20 20 C 1.76198 * 100.00092 * 180.02562 * 19 18 16 21 21 H 1.08004 * 120.00019 * 0.02562 * 20 19 18 22 22 C 1.38795 * 119.99810 * 179.97438 * 20 19 18 23 23 N 1.31635 * 119.99575 * 180.02562 * 22 20 19 24 24 Si 1.86793 * 120.00242 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47244 * 90.00194 * 24 22 20 26 26 H 1.48498 * 109.47205 * 209.99923 * 24 22 20 27 27 H 1.48496 * 109.47344 * 330.00405 * 24 22 20 28 28 H 1.09009 * 109.47042 * 296.75934 * 1 2 3 29 29 H 1.08999 * 109.47642 * 56.75977 * 1 2 3 30 30 H 1.09005 * 109.47474 * 176.76533 * 1 2 3 31 31 H 1.09004 * 109.88285 * 338.85700 * 4 2 1 32 32 H 1.09003 * 109.88218 * 100.02123 * 4 2 1 33 33 H 1.08999 * 109.46737 * 300.00443 * 8 6 5 34 34 H 1.09000 * 109.47033 * 59.99875 * 8 6 5 35 35 H 1.08998 * 115.55179 * 29.32317 * 9 8 6 36 36 H 1.09004 * 117.49533 * 0.02562 * 10 9 8 37 37 H 1.08997 * 117.50505 * 145.01754 * 10 9 8 38 38 H 1.09003 * 117.49740 * 214.97567 * 11 9 8 39 39 H 1.08998 * 117.49637 * 0.02562 * 11 9 8 40 40 H 1.09005 * 110.35981 * 265.28947 * 12 5 4 41 41 H 1.08990 * 110.36936 * 142.96940 * 12 5 4 42 42 H 0.97005 * 120.00266 * 87.20154 * 15 13 12 43 43 H 1.09002 * 109.47152 * 60.00245 * 18 16 15 44 44 H 1.09001 * 109.46980 * 300.00345 * 18 16 15 45 45 H 0.97007 * 119.99682 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9166 1.0191 0.0000 4 6 2.0759 -0.7911 -1.2073 5 7 3.2444 -1.5507 -0.7392 6 6 3.9923 -2.3834 -1.4900 7 8 3.7198 -2.5553 -2.6592 8 6 5.1672 -3.1007 -0.8767 9 6 5.8402 -3.9756 -1.9361 10 6 5.8305 -5.4892 -1.7126 11 6 7.1292 -4.6987 -1.5404 12 6 3.4632 -1.2498 0.6874 13 6 2.0789 -0.7955 1.2137 14 1 1.4448 -1.6532 1.4378 15 7 2.2215 0.0695 2.3874 16 6 2.1874 -0.4629 3.6251 17 8 2.0391 -1.6581 3.7671 18 6 2.3334 0.4271 4.8325 19 16 2.2472 -0.5770 6.3360 20 6 2.4395 0.6805 7.5552 21 1 2.5613 1.7106 7.2540 22 6 2.4335 0.3475 8.9026 23 7 2.5766 1.2871 9.8133 24 14 2.2208 -1.4336 9.4235 25 1 3.5528 -2.0824 9.5242 26 1 1.5438 -1.4857 10.7442 27 1 1.3967 -2.1490 8.4164 28 1 -0.3633 0.4627 0.9177 29 1 -0.3634 0.5633 -0.8595 30 1 -0.3634 -1.0260 -0.0580 31 1 1.3128 -1.4758 -1.5776 32 1 2.3739 -0.1023 -1.9978 33 1 5.8833 -2.3699 -0.5011 34 1 4.8216 -3.7267 -0.0541 35 1 5.7586 -3.6177 -2.9624 36 1 5.3443 -5.8617 -0.8108 37 1 5.7425 -6.1274 -2.5918 38 1 7.8955 -4.8168 -2.3066 39 1 7.4975 -4.5514 -0.5252 40 1 4.1931 -0.4478 0.7982 41 1 3.7960 -2.1426 1.2167 42 1 2.3404 1.0255 2.2738 43 1 1.5299 1.1635 4.8404 44 1 3.2950 0.9389 4.7924 45 1 2.5728 1.0543 10.7550 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071447962.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:23 Heat of formation + Delta-G solvation = -54.517796 kcal Electronic energy + Delta-G solvation = -24932.677396 eV Core-core repulsion = 21269.808464 eV Total energy + Delta-G solvation = -3662.868932 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.72415 -39.47019 -38.11288 -37.08491 -34.32164 -33.00090 -32.48650 -30.20017 -29.99896 -28.08603 -26.53543 -25.66469 -23.40971 -22.66328 -21.38876 -20.91763 -20.43267 -19.51080 -17.93905 -17.49363 -16.99191 -16.54525 -16.28301 -15.64192 -15.27518 -15.02142 -14.91508 -14.47179 -14.38613 -14.07327 -13.83515 -13.70400 -13.39803 -13.33658 -12.87726 -12.83583 -12.50594 -12.46569 -12.25187 -11.81859 -11.78935 -11.57468 -11.51967 -11.31408 -11.07077 -11.05163 -10.68548 -10.65640 -10.35939 -10.08193 -9.91093 -9.67616 -9.26476 -9.05049 -8.93727 -8.56984 -6.98212 -6.33707 -4.06223 2.35347 2.46265 2.73533 2.80070 3.21751 3.29246 3.45948 3.49562 3.56888 3.94858 4.18874 4.28294 4.32831 4.38542 4.45040 4.61503 4.65349 4.78730 4.79247 4.88875 4.99556 5.05407 5.08929 5.18296 5.19524 5.25216 5.32787 5.34395 5.35975 5.43698 5.52913 5.58984 5.60302 5.67085 5.73689 5.82187 5.88647 5.90976 5.93259 5.99908 6.35980 7.14970 7.43037 7.87096 7.89226 8.32435 8.36731 9.12288 10.75453 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.014209 B = 0.002571 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.114660 B =10886.407169 C =12358.263031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.110 4.110 3 H 0.092 0.908 4 C 0.114 3.886 5 N -0.619 5.619 6 C 0.534 3.466 7 O -0.539 6.539 8 C -0.108 4.108 9 C -0.142 4.142 10 C -0.178 4.178 11 C -0.180 4.180 12 C 0.085 3.915 13 C 0.140 3.860 14 H 0.109 0.891 15 N -0.726 5.726 16 C 0.533 3.467 17 O -0.515 6.515 18 C -0.125 4.125 19 S -0.141 6.141 20 C -0.522 4.522 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.879 5.879 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.117 0.883 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.403 0.597 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.800 -4.061 -23.672 24.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 H 0.110 0.890 4 C -0.009 4.009 5 N -0.355 5.355 6 C 0.324 3.676 7 O -0.416 6.416 8 C -0.148 4.148 9 C -0.161 4.161 10 C -0.215 4.215 11 C -0.217 4.217 12 C -0.040 4.040 13 C 0.033 3.967 14 H 0.127 0.873 15 N -0.380 5.380 16 C 0.320 3.680 17 O -0.389 6.389 18 C -0.275 4.275 19 S 0.086 5.914 20 C -0.670 4.670 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.516 5.516 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.135 0.865 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.237 0.763 43 H 0.117 0.883 44 H 0.116 0.884 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.461 -6.160 -23.902 24.805 hybrid contribution 0.245 1.363 0.418 1.447 sum 2.706 -4.797 -23.484 24.121 Atomic orbital electron populations 1.21764 0.92863 1.02727 1.02674 1.22528 0.97374 0.99669 0.93419 0.88978 1.21999 0.87845 0.94686 0.96377 1.48408 1.30559 1.45131 1.11355 1.20295 0.83358 0.78088 0.85901 1.90690 1.70871 1.63603 1.16431 1.21228 0.95456 0.99378 0.98692 1.22048 1.00274 0.93473 1.00269 1.23049 1.01193 0.93891 1.03394 1.23013 0.91232 1.04563 1.02860 1.22821 0.98513 1.02023 0.80597 1.22055 0.95335 0.94685 0.84606 0.87285 1.45843 1.76457 1.10956 1.04741 1.20364 0.75051 0.88969 0.83654 1.90713 1.46904 1.15516 1.85768 1.23283 1.05836 1.02138 0.96279 1.84806 1.96027 1.14369 0.96244 1.22301 1.57810 0.94868 0.92006 0.89354 1.24718 0.93225 0.97992 0.95394 1.69940 1.47551 1.32868 1.01220 0.86735 0.80244 0.84953 0.79913 1.19197 1.19923 1.15926 0.91500 0.91933 0.92021 0.90848 0.91052 0.88381 0.88508 0.86463 0.88699 0.88739 0.88638 0.88595 0.90579 0.89614 0.76257 0.88326 0.88364 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.16 37.16 0.34 -0.62 16 2 C -0.11 -0.77 3.19 -88.79 -0.28 -1.06 16 3 H 0.09 0.52 8.00 -51.93 -0.42 0.11 16 4 C 0.11 0.96 6.46 -3.07 -0.02 0.94 16 5 N -0.62 -5.98 3.33 -170.52 -0.57 -6.54 16 6 C 0.53 5.95 7.85 -10.98 -0.09 5.86 16 7 O -0.54 -7.76 15.89 5.56 0.09 -7.68 16 8 C -0.11 -0.93 4.99 -27.89 -0.14 -1.07 16 9 C -0.14 -1.27 5.41 -90.62 -0.49 -1.76 16 10 C -0.18 -1.44 10.18 -26.73 -0.27 -1.71 16 11 C -0.18 -1.32 10.25 -26.73 -0.27 -1.59 16 12 C 0.09 0.76 6.39 -2.52 -0.02 0.74 16 13 C 0.14 1.31 2.87 -65.79 -0.19 1.12 16 14 H 0.11 1.26 7.44 -51.93 -0.39 0.88 16 15 N -0.73 -7.46 5.20 -51.73 -0.27 -7.72 16 16 C 0.53 8.25 7.85 -10.98 -0.09 8.17 16 17 O -0.52 -9.96 15.50 5.56 0.09 -9.87 16 18 C -0.12 -2.19 6.16 36.01 0.22 -1.97 16 19 S -0.14 -3.39 18.55 -107.50 -1.99 -5.38 16 20 C -0.52 -14.54 10.04 30.94 0.31 -14.23 16 21 H 0.09 2.56 8.03 -52.48 -0.42 2.14 16 22 C 0.10 2.73 5.50 -17.43 -0.10 2.63 16 23 N -0.88 -25.98 13.97 55.49 0.78 -25.20 16 24 Si 0.86 21.22 27.74 -169.99 -4.71 16.51 16 25 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.24 -5.80 6.74 56.52 0.38 -5.42 16 28 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.45 8.06 -51.93 -0.42 0.03 16 31 H 0.07 0.66 7.77 -51.93 -0.40 0.25 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 0.77 7.58 -51.93 -0.39 0.38 16 35 H 0.12 1.21 7.31 -51.93 -0.38 0.83 16 36 H 0.09 0.74 8.03 -51.93 -0.42 0.32 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 0.82 7.48 -51.93 -0.39 0.43 16 42 H 0.40 3.01 8.57 -40.82 -0.35 2.66 16 43 H 0.10 1.61 8.14 -51.92 -0.42 1.18 16 44 H 0.10 1.59 8.14 -51.91 -0.42 1.16 16 45 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 385.42 15.07 5.81 5.81 Total: -1.00 -34.31 385.42 -9.22 -43.54 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -7.36 Total: 1.09 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -1.08 Total: -4.55 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: -0.06 Total: -39.47 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: 0.17 Total: -17.55 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.71 Total: 16.51 kcal Atomic # 16 Polarization: -3.39 SS G_CDS: -1.99 Total: -5.38 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.31 -9.22 -43.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071447962.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.979 kcal (2) G-P(sol) polarization free energy of solvation -34.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds