Wall clock time and date at job start Tue Mar 31 2020 14:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.50703 * 120.00102 * 2 1 4 4 C 1.32997 * 119.99835 * 179.97438 * 2 1 3 5 5 C 1.47101 * 119.99968 * 352.87000 * 4 2 1 6 6 O 1.21614 * 120.00172 * 353.86843 * 5 4 2 7 7 N 1.34778 * 119.99637 * 173.86222 * 5 4 2 8 8 C 1.47427 * 125.64577 * 180.02562 * 7 5 4 9 9 C 1.54912 * 104.83209 * 155.91655 * 8 7 5 10 10 H 1.08996 * 111.00317 * 278.93180 * 9 8 7 11 11 C 1.53002 * 111.03633 * 155.09719 * 9 8 7 12 12 C 1.55154 * 101.57863 * 37.00863 * 9 8 7 13 13 H 1.09000 * 110.71542 * 205.95327 * 12 9 8 14 14 N 1.46504 * 110.72145 * 82.86346 * 12 9 8 15 15 C 1.34769 * 119.99893 * 154.99532 * 14 12 9 16 16 O 1.21274 * 120.00495 * 359.97438 * 15 14 12 17 17 C 1.50709 * 119.99834 * 179.97438 * 15 14 12 18 18 S 1.80995 * 109.47145 * 179.97438 * 17 15 14 19 19 C 1.76203 * 99.99989 * 180.02562 * 18 17 15 20 20 H 1.07996 * 119.99830 * 0.02562 * 19 18 17 21 21 C 1.38801 * 119.99876 * 179.73046 * 19 18 17 22 22 N 1.31626 * 119.99997 * 0.27429 * 21 19 18 23 23 Si 1.86797 * 119.99596 * 180.27725 * 21 19 18 24 24 H 1.48496 * 109.47221 * 60.00103 * 23 21 19 25 25 H 1.48509 * 109.46836 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47438 * 299.99317 * 23 21 19 27 27 C 1.47020 * 125.65275 * 0.05601 * 7 5 4 28 28 H 1.09007 * 109.46973 * 144.69079 * 1 2 3 29 29 H 1.09002 * 109.47704 * 264.69402 * 1 2 3 30 30 H 1.09002 * 109.47028 * 24.69917 * 1 2 3 31 31 H 1.09007 * 109.46668 * 269.99290 * 3 2 1 32 32 H 1.08993 * 109.46886 * 29.99094 * 3 2 1 33 33 H 1.08996 * 109.46938 * 149.99367 * 3 2 1 34 34 H 1.08001 * 120.00058 * 172.87529 * 4 2 1 35 35 H 1.08999 * 110.36756 * 37.07583 * 8 7 5 36 36 H 1.08999 * 110.46208 * 274.80455 * 8 7 5 37 37 H 1.08998 * 109.46825 * 307.78712 * 11 9 8 38 38 H 1.09003 * 109.46836 * 67.78700 * 11 9 8 39 39 H 1.08994 * 109.47047 * 187.78439 * 11 9 8 40 40 H 0.97000 * 119.99825 * 334.99653 * 14 12 9 41 41 H 1.09003 * 109.46503 * 60.00145 * 17 15 14 42 42 H 1.09000 * 109.47015 * 300.00718 * 17 15 14 43 43 H 0.97001 * 119.99723 * 180.02562 * 22 21 19 44 44 H 1.09001 * 109.87604 * 61.59346 * 27 7 5 45 45 H 1.09004 * 109.88332 * 300.43381 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1719 -1.1518 0.0005 5 6 1.4449 -2.4207 0.1592 6 8 0.2531 -2.4126 0.4012 7 7 2.0996 -3.5924 0.0363 8 6 1.4973 -4.9313 0.1697 9 6 2.4317 -5.8686 -0.6354 10 1 2.2115 -5.8177 -1.7017 11 6 2.3363 -7.3084 -0.1268 12 6 3.8250 -5.2604 -0.3255 13 1 4.5293 -5.4816 -1.1275 14 7 4.3320 -5.7534 0.9576 15 6 5.6589 -5.7806 1.1922 16 8 6.4332 -5.3974 0.3411 17 6 6.1804 -6.2872 2.5123 18 16 7.9882 -6.1993 2.5206 19 6 8.3180 -6.8337 4.1310 20 1 7.5013 -7.1340 4.7707 21 6 9.6276 -6.9532 4.5751 22 7 10.6229 -6.5876 3.7952 23 14 9.9775 -7.6330 6.2794 24 1 9.4363 -9.0119 6.3830 25 1 11.4442 -7.6588 6.5105 26 1 9.3304 -6.7692 7.2993 27 6 3.5329 -3.7469 -0.2524 28 1 -0.3633 -0.8387 -0.5940 29 1 -0.3634 -0.0950 1.0232 30 1 -0.3633 0.9337 -0.4294 31 1 2.4423 1.6197 -1.0278 32 1 1.6714 2.0647 0.5137 33 1 3.2128 1.1748 0.5139 34 1 3.2457 -1.1555 -0.1155 35 1 0.4936 -4.9398 -0.2553 36 1 1.4676 -5.2332 1.2167 37 1 2.4922 -7.3237 0.9519 38 1 1.3496 -7.7104 -0.3571 39 1 3.0989 -7.9167 -0.6128 40 1 3.7127 -6.0603 1.6381 41 1 5.8666 -7.3215 2.6540 42 1 5.7826 -5.6729 3.3200 43 1 11.5381 -6.6715 4.1054 44 1 4.1225 -3.2937 0.5446 45 1 3.7718 -3.2766 -1.2063 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071526408.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:29 Heat of formation + Delta-G solvation = -58.507876 kcal Electronic energy + Delta-G solvation = -25135.890923 eV Core-core repulsion = 21472.848968 eV Total energy + Delta-G solvation = -3663.041955 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.70931 -39.36682 -37.86128 -35.58061 -34.12912 -32.59141 -32.45111 -30.06379 -28.80346 -28.16523 -27.94051 -26.26615 -25.50716 -23.36796 -21.19146 -20.48476 -20.16003 -18.24364 -17.97059 -17.36696 -16.75070 -16.27773 -15.66451 -15.49784 -14.90003 -14.82528 -14.72902 -14.45557 -14.16515 -14.03498 -13.71709 -13.40536 -13.32090 -13.00173 -12.83206 -12.60159 -12.57809 -12.53775 -12.38280 -12.02956 -11.93622 -11.80797 -11.59188 -11.25741 -11.07546 -11.05816 -10.99611 -10.78456 -9.85851 -9.81353 -9.50207 -9.39245 -9.10516 -9.04767 -8.74753 -8.28193 -6.53368 -6.24281 -3.95152 1.13056 2.77611 2.96019 2.98041 3.09940 3.21845 3.25678 3.28609 3.64378 3.98608 4.18047 4.30861 4.44557 4.54826 4.58477 4.88851 4.95871 5.04264 5.10779 5.11881 5.14511 5.15858 5.18327 5.29741 5.38295 5.43356 5.49340 5.51565 5.54085 5.59810 5.61863 5.73068 5.77391 5.82959 5.85187 5.95335 6.08795 6.09700 6.25572 6.31175 6.52816 7.31725 7.56630 7.59721 8.02087 8.32424 8.51046 9.21145 10.83066 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.014882 B = 0.002535 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.069836 B =11044.593944 C =12055.098154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.031 4.031 3 C -0.128 4.128 4 C -0.235 4.235 5 C 0.564 3.436 6 O -0.545 6.545 7 N -0.616 5.616 8 C 0.109 3.891 9 C -0.112 4.112 10 H 0.098 0.902 11 C -0.140 4.140 12 C 0.140 3.860 13 H 0.113 0.887 14 N -0.729 5.729 15 C 0.535 3.465 16 O -0.515 6.515 17 C -0.154 4.154 18 S -0.058 6.058 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.088 3.912 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.127 0.873 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.399 0.601 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.269 0.731 44 H 0.078 0.922 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.420 7.735 -9.557 23.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.033 4.033 3 C -0.185 4.185 4 C -0.256 4.256 5 C 0.357 3.643 6 O -0.425 6.425 7 N -0.350 5.350 8 C -0.013 4.013 9 C -0.132 4.132 10 H 0.116 0.884 11 C -0.198 4.198 12 C 0.033 3.967 13 H 0.131 0.869 14 N -0.384 5.384 15 C 0.321 3.679 16 O -0.389 6.389 17 C -0.305 4.305 18 S 0.168 5.832 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.036 4.036 28 H 0.107 0.893 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.145 0.855 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.234 0.766 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.096 0.904 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -19.565 8.468 -10.861 23.926 hybrid contribution -0.719 -1.025 2.457 2.757 sum -20.284 7.443 -8.404 23.184 Atomic orbital electron populations 1.21160 0.90948 1.02385 1.03582 1.22586 0.96835 0.94504 0.89357 1.21021 1.00285 0.94238 1.02950 1.22371 1.00466 0.91654 1.11059 1.18218 0.86267 0.83141 0.76725 1.90750 1.15028 1.87106 1.49606 1.48352 1.09992 1.05559 1.71048 1.22297 0.97628 0.81314 1.00074 1.22690 0.93779 0.95505 1.01179 0.88393 1.21649 1.02423 0.94098 1.01599 1.21843 0.95566 0.91150 0.88113 0.86895 1.46048 1.07425 1.67662 1.17227 1.20344 0.81334 0.77127 0.89066 1.90704 1.55836 1.45940 1.46394 1.23538 1.06870 1.03765 0.96307 1.85374 0.91326 1.84566 1.21920 1.22822 0.95109 1.49517 1.01027 0.90983 1.24987 0.95089 0.95083 0.98384 1.70002 0.99401 1.44605 1.36277 0.86227 0.77389 0.79410 0.82500 1.19931 1.20797 1.19934 1.22620 0.81215 0.97722 1.02027 0.89345 0.90321 0.92661 0.90363 0.90825 0.90859 0.85528 0.90157 0.91392 0.92141 0.91966 0.91413 0.76591 0.89169 0.89244 0.92104 0.90383 0.90324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 8.47 36.00 0.30 -0.86 16 2 C -0.03 -0.28 6.11 -101.17 -0.62 -0.90 16 3 C -0.13 -0.84 10.02 36.01 0.36 -0.48 16 4 C -0.23 -2.43 9.13 -37.80 -0.35 -2.78 16 5 C 0.56 6.93 7.65 -12.66 -0.10 6.84 16 6 O -0.54 -7.92 13.54 5.27 0.07 -7.85 16 7 N -0.62 -6.62 3.33 -171.91 -0.57 -7.20 16 8 C 0.11 1.00 6.33 -2.53 -0.02 0.99 16 9 C -0.11 -0.87 3.51 -88.47 -0.31 -1.18 16 10 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 11 C -0.14 -0.98 8.85 37.16 0.33 -0.66 16 12 C 0.14 1.43 3.09 -66.10 -0.20 1.23 16 13 H 0.11 1.28 7.55 -51.93 -0.39 0.89 16 14 N -0.73 -8.69 4.45 -52.03 -0.23 -8.93 16 15 C 0.53 9.15 7.85 -10.98 -0.09 9.06 16 16 O -0.51 -10.73 15.51 5.56 0.09 -10.64 16 17 C -0.15 -2.96 6.16 36.01 0.22 -2.74 16 18 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 19 C -0.54 -15.02 9.50 30.94 0.29 -14.73 16 20 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -25.83 13.22 55.49 0.73 -25.09 16 23 Si 0.92 21.17 29.55 -169.99 -5.02 16.14 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 C 0.09 0.91 5.81 -3.07 -0.02 0.89 16 28 H 0.09 0.99 6.12 -51.93 -0.32 0.67 16 29 H 0.08 0.79 8.05 -51.93 -0.42 0.37 16 30 H 0.05 0.40 8.09 -51.93 -0.42 -0.02 16 31 H 0.08 0.43 8.14 -51.92 -0.42 0.00 16 32 H 0.07 0.41 8.12 -51.93 -0.42 -0.02 16 33 H 0.07 0.47 8.07 -51.93 -0.42 0.05 16 34 H 0.13 1.17 7.40 -52.49 -0.39 0.78 16 35 H 0.08 0.76 8.04 -51.93 -0.42 0.34 16 36 H 0.07 0.61 7.98 -51.93 -0.41 0.20 16 37 H 0.06 0.42 6.48 -51.93 -0.34 0.09 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.40 3.93 7.12 -40.82 -0.29 3.64 16 41 H 0.09 1.60 8.14 -51.91 -0.42 1.17 16 42 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 43 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.08 0.92 8.04 -51.93 -0.42 0.51 16 45 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 383.63 15.07 5.78 5.78 Total: -1.00 -34.49 383.63 -8.80 -43.29 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -7.16 Total: 1.56 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -0.28 Total: -3.32 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: -0.07 Total: -41.21 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: 0.16 Total: -18.49 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.49 -8.80 -43.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071526408.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.219 kcal (2) G-P(sol) polarization free energy of solvation -34.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds