Wall clock time and date at job start Tue Mar 31 2020 14:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.50703 * 120.00102 * 2 1 4 4 C 1.32997 * 119.99835 * 179.97438 * 2 1 3 5 5 C 1.47101 * 119.99968 * 352.87000 * 4 2 1 6 6 O 1.21614 * 120.00172 * 353.86843 * 5 4 2 7 7 N 1.34778 * 119.99637 * 173.86222 * 5 4 2 8 8 C 1.47427 * 125.64577 * 180.02562 * 7 5 4 9 9 C 1.54912 * 104.83209 * 155.91655 * 8 7 5 10 10 H 1.08996 * 111.00317 * 278.93180 * 9 8 7 11 11 C 1.53002 * 111.03633 * 155.09719 * 9 8 7 12 12 C 1.55154 * 101.57863 * 37.00863 * 9 8 7 13 13 H 1.09000 * 110.71542 * 205.95327 * 12 9 8 14 14 N 1.46504 * 110.72145 * 82.86346 * 12 9 8 15 15 C 1.34769 * 119.99893 * 154.99532 * 14 12 9 16 16 O 1.21274 * 120.00495 * 359.97438 * 15 14 12 17 17 C 1.50709 * 119.99834 * 179.97438 * 15 14 12 18 18 S 1.80995 * 109.47145 * 179.97438 * 17 15 14 19 19 C 1.76203 * 99.99989 * 180.02562 * 18 17 15 20 20 H 1.07996 * 119.99830 * 0.02562 * 19 18 17 21 21 C 1.38801 * 119.99876 * 179.73046 * 19 18 17 22 22 N 1.31626 * 119.99997 * 0.27429 * 21 19 18 23 23 Si 1.86797 * 119.99596 * 180.27725 * 21 19 18 24 24 H 1.48496 * 109.47221 * 60.00103 * 23 21 19 25 25 H 1.48509 * 109.46836 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47438 * 299.99317 * 23 21 19 27 27 C 1.47020 * 125.65275 * 0.05601 * 7 5 4 28 28 H 1.09007 * 109.46973 * 144.69079 * 1 2 3 29 29 H 1.09002 * 109.47704 * 264.69402 * 1 2 3 30 30 H 1.09002 * 109.47028 * 24.69917 * 1 2 3 31 31 H 1.09007 * 109.46668 * 269.99290 * 3 2 1 32 32 H 1.08993 * 109.46886 * 29.99094 * 3 2 1 33 33 H 1.08996 * 109.46938 * 149.99367 * 3 2 1 34 34 H 1.08001 * 120.00058 * 172.87529 * 4 2 1 35 35 H 1.08999 * 110.36756 * 37.07583 * 8 7 5 36 36 H 1.08999 * 110.46208 * 274.80455 * 8 7 5 37 37 H 1.08998 * 109.46825 * 307.78712 * 11 9 8 38 38 H 1.09003 * 109.46836 * 67.78700 * 11 9 8 39 39 H 1.08994 * 109.47047 * 187.78439 * 11 9 8 40 40 H 0.97000 * 119.99825 * 334.99653 * 14 12 9 41 41 H 1.09003 * 109.46503 * 60.00145 * 17 15 14 42 42 H 1.09000 * 109.47015 * 300.00718 * 17 15 14 43 43 H 0.97001 * 119.99723 * 180.02562 * 22 21 19 44 44 H 1.09001 * 109.87604 * 61.59346 * 27 7 5 45 45 H 1.09004 * 109.88332 * 300.43381 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1719 -1.1518 0.0005 5 6 1.4449 -2.4207 0.1592 6 8 0.2531 -2.4126 0.4012 7 7 2.0996 -3.5924 0.0363 8 6 1.4973 -4.9313 0.1697 9 6 2.4317 -5.8686 -0.6354 10 1 2.2115 -5.8177 -1.7017 11 6 2.3363 -7.3084 -0.1268 12 6 3.8250 -5.2604 -0.3255 13 1 4.5293 -5.4816 -1.1275 14 7 4.3320 -5.7534 0.9576 15 6 5.6589 -5.7806 1.1922 16 8 6.4332 -5.3974 0.3411 17 6 6.1804 -6.2872 2.5123 18 16 7.9882 -6.1993 2.5206 19 6 8.3180 -6.8337 4.1310 20 1 7.5013 -7.1340 4.7707 21 6 9.6276 -6.9532 4.5751 22 7 10.6229 -6.5876 3.7952 23 14 9.9775 -7.6330 6.2794 24 1 9.4363 -9.0119 6.3830 25 1 11.4442 -7.6588 6.5105 26 1 9.3304 -6.7692 7.2993 27 6 3.5329 -3.7469 -0.2524 28 1 -0.3633 -0.8387 -0.5940 29 1 -0.3634 -0.0950 1.0232 30 1 -0.3633 0.9337 -0.4294 31 1 2.4423 1.6197 -1.0278 32 1 1.6714 2.0647 0.5137 33 1 3.2128 1.1748 0.5139 34 1 3.2457 -1.1555 -0.1155 35 1 0.4936 -4.9398 -0.2553 36 1 1.4676 -5.2332 1.2167 37 1 2.4922 -7.3237 0.9519 38 1 1.3496 -7.7104 -0.3571 39 1 3.0989 -7.9167 -0.6128 40 1 3.7127 -6.0603 1.6381 41 1 5.8666 -7.3215 2.6540 42 1 5.7826 -5.6729 3.3200 43 1 11.5381 -6.6715 4.1054 44 1 4.1225 -3.2937 0.5446 45 1 3.7718 -3.2766 -1.2063 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071526408.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:28 Heat of formation + Delta-G solvation = -80.843637 kcal Electronic energy + Delta-G solvation = -25136.859475 eV Core-core repulsion = 21472.848968 eV Total energy + Delta-G solvation = -3664.010506 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.65201 -40.50221 -38.92135 -36.34403 -35.19529 -34.57627 -33.50484 -31.30429 -29.58480 -29.21650 -28.65003 -27.63647 -26.95925 -24.25184 -22.29443 -21.36257 -21.05827 -19.86554 -19.07266 -18.34883 -17.89935 -17.44576 -16.87001 -16.69236 -16.57090 -16.14332 -15.77895 -15.49716 -15.14958 -14.91158 -14.74253 -14.63288 -14.42561 -14.13608 -13.79240 -13.55559 -13.46440 -13.30936 -13.21230 -13.16121 -13.12280 -12.86760 -12.65629 -12.64208 -12.50797 -12.32193 -11.98136 -11.78383 -11.67749 -11.12414 -10.96381 -10.73014 -10.27001 -10.20253 -10.16832 -9.60182 -8.64649 -8.34053 -6.11233 0.34298 1.27249 1.43828 1.46868 1.56429 1.60181 1.95786 2.20148 2.25454 2.29772 3.00109 3.21685 3.32747 3.48494 3.70106 3.83679 3.89673 3.96733 4.17308 4.22819 4.26670 4.32384 4.45437 4.52426 4.53571 4.57726 4.65391 4.68487 4.72199 4.77199 4.79020 4.88422 4.94637 5.03548 5.11886 5.14033 5.26940 5.38121 5.42523 5.46450 5.52719 5.60989 6.20263 6.42884 6.46268 7.07599 7.11796 7.22138 8.74707 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.014882 B = 0.002535 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.069836 B =11044.593944 C =12055.098154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.022 4.022 3 C -0.127 4.127 4 C -0.256 4.256 5 C 0.555 3.445 6 O -0.575 6.575 7 N -0.615 5.615 8 C 0.106 3.894 9 C -0.093 4.093 10 H 0.113 0.887 11 C -0.140 4.140 12 C 0.137 3.863 13 H 0.106 0.894 14 N -0.703 5.703 15 C 0.541 3.459 16 O -0.557 6.557 17 C -0.132 4.132 18 S -0.145 6.145 19 C -0.548 4.548 20 H 0.081 0.919 21 C 0.014 3.986 22 N -0.910 5.910 23 Si 0.996 3.004 24 H -0.262 1.262 25 H -0.279 1.279 26 H -0.263 1.263 27 C 0.093 3.907 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.135 0.865 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.413 0.587 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.271 0.729 44 H 0.063 0.937 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.018 7.608 -8.927 24.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.024 4.024 3 C -0.183 4.183 4 C -0.277 4.277 5 C 0.349 3.651 6 O -0.457 6.457 7 N -0.348 5.348 8 C -0.016 4.016 9 C -0.113 4.113 10 H 0.131 0.869 11 C -0.197 4.197 12 C 0.031 3.969 13 H 0.124 0.876 14 N -0.358 5.358 15 C 0.327 3.673 16 O -0.434 6.434 17 C -0.283 4.283 18 S 0.082 5.918 19 C -0.695 4.695 20 H 0.099 0.901 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.817 3.183 24 H -0.187 1.187 25 H -0.204 1.204 26 H -0.188 1.188 27 C -0.031 4.031 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.153 0.847 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.081 0.919 40 H 0.250 0.750 41 H 0.128 0.872 42 H 0.123 0.877 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.211 8.323 -10.231 24.977 hybrid contribution -0.373 -0.931 2.192 2.410 sum -21.584 7.393 -8.039 24.190 Atomic orbital electron populations 1.21111 0.91221 1.02781 1.02777 1.22912 0.96882 0.95393 0.87226 1.21086 1.00145 0.92975 1.04113 1.22435 1.00851 0.91360 1.13071 1.18589 0.86095 0.84040 0.76375 1.90732 1.16192 1.87580 1.51244 1.48403 1.10070 1.05904 1.70451 1.22421 0.97854 0.80821 1.00535 1.22637 0.91152 0.95566 1.01922 0.86883 1.21665 1.03294 0.93185 1.01580 1.21976 0.96753 0.91475 0.86688 0.87581 1.45767 1.05698 1.66037 1.18271 1.19960 0.82649 0.76907 0.87802 1.90698 1.57282 1.48111 1.47327 1.23384 1.01072 1.05549 0.98317 1.85510 0.98701 1.84986 1.22560 1.23172 0.95779 1.49329 1.01263 0.90055 1.26088 0.94816 0.95219 1.02932 1.70164 0.99873 1.46031 1.38591 0.85044 0.77333 0.79062 0.76822 1.18682 1.20419 1.18809 1.22545 0.80818 0.97553 1.02144 0.91343 0.91248 0.90273 0.88812 0.89465 0.90715 0.84742 0.90214 0.91080 0.91989 0.90327 0.91878 0.74962 0.87197 0.87662 0.91997 0.91905 0.89062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.20 8.47 71.24 0.60 -1.60 16 2 C -0.02 -0.38 6.11 -17.62 -0.11 -0.49 16 3 C -0.13 -1.40 10.02 71.24 0.71 -0.68 16 4 C -0.26 -5.18 9.13 23.43 0.21 -4.97 16 5 C 0.55 13.51 7.65 86.57 0.66 14.17 16 6 O -0.57 -16.81 13.54 -4.07 -0.06 -16.86 16 7 N -0.62 -12.69 3.33 -816.06 -2.71 -15.41 16 8 C 0.11 1.77 6.33 86.86 0.55 2.32 16 9 C -0.09 -1.25 3.51 -9.40 -0.03 -1.28 16 10 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 11 C -0.14 -1.60 8.85 71.98 0.64 -0.96 16 12 C 0.14 2.62 3.09 46.18 0.14 2.76 16 13 H 0.11 2.30 7.55 -2.39 -0.02 2.28 16 14 N -0.70 -15.70 4.45 -436.93 -1.95 -17.65 16 15 C 0.54 18.15 7.85 87.66 0.69 18.83 16 16 O -0.56 -23.46 15.51 -3.01 -0.05 -23.51 16 17 C -0.13 -4.96 6.16 71.24 0.44 -4.52 16 18 S -0.14 -7.79 20.57 -56.49 -1.16 -8.95 16 19 C -0.55 -30.73 9.50 67.95 0.65 -30.08 16 20 H 0.08 4.24 7.80 -2.91 -0.02 4.21 16 21 C 0.01 0.81 5.49 84.86 0.47 1.27 16 22 N -0.91 -55.19 13.22 21.65 0.29 -54.90 16 23 Si 1.00 43.08 29.55 68.60 2.03 45.10 16 24 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 25 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 26 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 27 C 0.09 1.84 5.81 86.73 0.50 2.35 16 28 H 0.07 1.53 6.12 -2.38 -0.01 1.52 16 29 H 0.07 1.38 8.05 -2.39 -0.02 1.36 16 30 H 0.08 1.00 8.09 -2.39 -0.02 0.98 16 31 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.09 0.75 8.12 -2.39 -0.02 0.73 16 33 H 0.07 0.83 8.07 -2.39 -0.02 0.81 16 34 H 0.13 2.42 7.40 -2.91 -0.02 2.39 16 35 H 0.08 1.39 8.04 -2.39 -0.02 1.37 16 36 H 0.07 1.15 7.98 -2.39 -0.02 1.13 16 37 H 0.06 0.69 6.48 -2.39 -0.02 0.68 16 38 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.41 7.16 7.12 -92.71 -0.66 6.50 16 41 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 42 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 43 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 44 H 0.06 1.46 8.04 -2.39 -0.02 1.44 16 45 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -76.86 383.63 2.84 -74.02 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 0.33 Total: 21.03 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: 6.12 Total: -2.88 kcal Atomic # 7 Polarization: -83.59 SS G_CDS: -4.37 Total: -87.96 kcal Atomic # 8 Polarization: -40.27 SS G_CDS: -0.10 Total: -40.37 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: -7.79 SS G_CDS: -1.16 Total: -8.95 kcal Total: -76.86 2.84 -74.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071526408.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.821 kcal (2) G-P(sol) polarization free energy of solvation -76.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds