Wall clock time and date at job start Tue Mar 31 2020 14:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50696 * 119.99724 * 2 1 4 4 C 1.52997 * 109.47055 * 124.99964 * 3 2 1 5 5 C 1.50706 * 109.47238 * 179.97438 * 4 3 2 6 6 O 1.21279 * 119.99507 * 0.02562 * 5 4 3 7 7 N 1.34774 * 120.00020 * 180.02562 * 5 4 3 8 8 C 1.46496 * 119.99544 * 180.02562 * 7 5 4 9 9 H 1.08997 * 110.64815 * 325.69794 * 8 7 5 10 10 C 1.54324 * 110.72462 * 88.84413 * 8 7 5 11 11 N 1.47022 * 107.26938 * 96.16567 * 10 8 7 12 12 C 1.34784 * 125.64445 * 178.90985 * 11 10 8 13 13 O 1.21282 * 119.99672 * 180.02562 * 12 11 10 14 14 C 1.50692 * 120.00158 * 0.02562 * 12 11 10 15 15 S 1.80998 * 109.47251 * 180.02562 * 14 12 11 16 16 C 1.76206 * 100.00124 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99989 * 359.97438 * 16 15 14 18 18 C 1.38794 * 120.00029 * 179.97438 * 16 15 14 19 19 N 1.31627 * 120.00216 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00035 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47180 * 359.97438 * 20 18 16 22 22 H 1.48506 * 109.47117 * 120.00121 * 20 18 16 23 23 H 1.48495 * 109.47165 * 239.99836 * 20 18 16 24 24 C 1.47416 * 108.70846 * 358.94297 * 11 10 8 25 25 C 1.55162 * 110.71729 * 202.55676 * 8 7 5 26 26 H 1.09003 * 111.00353 * 159.06378 * 25 8 7 27 27 C 1.53007 * 111.00445 * 35.21531 * 25 8 7 28 28 H 1.07995 * 120.00363 * 359.97438 * 1 2 3 29 29 H 1.08001 * 119.99592 * 180.02562 * 1 2 3 30 30 H 1.08001 * 119.99936 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47328 * 5.00234 * 3 2 1 32 32 H 1.09004 * 109.47043 * 245.00045 * 3 2 1 33 33 H 1.09001 * 109.46832 * 59.99966 * 4 3 2 34 34 H 1.09000 * 109.47611 * 300.00263 * 4 3 2 35 35 H 0.96994 * 119.99756 * 0.02562 * 7 5 4 36 36 H 1.08996 * 109.88657 * 215.58464 * 10 8 7 37 37 H 1.08999 * 109.87531 * 336.75147 * 10 8 7 38 38 H 1.09008 * 109.47148 * 300.00158 * 14 12 11 39 39 H 1.09005 * 109.47676 * 59.99667 * 14 12 11 40 40 H 0.97003 * 120.00511 * 179.97438 * 19 18 16 41 41 H 1.08998 * 110.36993 * 142.96573 * 24 11 10 42 42 H 1.09004 * 110.37060 * 265.29222 * 24 11 10 43 43 H 1.09001 * 109.47146 * 59.99733 * 27 25 8 44 44 H 1.08994 * 109.47012 * 179.97438 * 27 25 8 45 45 H 1.08997 * 109.46698 * 299.99970 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7889 2.6380 1.1813 6 8 3.5703 3.4644 0.3209 7 7 4.7060 2.8866 2.1370 8 6 5.4384 4.1554 2.1370 9 1 5.6194 4.4947 1.1171 10 6 4.6736 5.2275 2.9414 11 7 5.2400 5.2418 4.2981 12 6 4.8570 6.0573 5.3006 13 8 5.3970 5.9813 6.3839 14 6 3.7579 7.0633 5.0754 15 16 3.4770 8.0010 6.5979 16 6 2.1828 9.0709 6.0639 17 1 1.8127 9.0072 5.0513 18 6 1.6389 9.9955 6.9446 19 7 2.0896 10.0729 8.1789 20 14 0.2674 11.1303 6.3784 21 1 -0.0557 10.8455 4.9573 22 1 -0.9385 10.9053 7.2154 23 1 0.7064 12.5425 6.5122 24 6 6.2967 4.2173 4.3802 25 6 6.7740 4.0182 2.9149 26 1 7.4777 4.7980 2.6235 27 6 7.3845 2.6295 2.7158 28 1 -0.5400 0.9352 0.0004 29 1 -0.5399 -0.9354 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6212 1.4026 -0.9314 33 1 3.7399 0.5066 1.0920 34 1 2.4772 1.2355 2.1130 35 1 4.8811 2.2255 2.8249 36 1 4.8039 6.2040 2.4750 37 1 3.6146 4.9732 2.9845 38 1 4.0483 7.7461 4.2769 39 1 2.8418 6.5439 4.7939 40 1 1.7098 10.7193 8.7944 41 1 7.1195 4.5698 5.0021 42 1 5.8923 3.2860 4.7768 43 1 7.5792 2.4667 1.6558 44 1 8.3197 2.5607 3.2714 45 1 6.6896 1.8719 3.0781 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071653607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:27 Heat of formation + Delta-G solvation = -60.085782 kcal Electronic energy + Delta-G solvation = -25011.986625 eV Core-core repulsion = 21348.876246 eV Total energy + Delta-G solvation = -3663.110378 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.73577 -39.37655 -37.64398 -35.69879 -34.23535 -32.73082 -32.42429 -31.16775 -29.49886 -28.95126 -26.21975 -25.41881 -24.96514 -22.99346 -21.03605 -20.32843 -20.12882 -19.34040 -17.76726 -17.43114 -16.77827 -16.51611 -16.16228 -15.59167 -15.36041 -14.87108 -14.79546 -14.50950 -14.32087 -14.15257 -13.79001 -13.67596 -13.12572 -12.99981 -12.87337 -12.70906 -12.52969 -12.43849 -12.32630 -11.94866 -11.66680 -11.44507 -11.40158 -11.31698 -11.06213 -11.05571 -10.99193 -10.74567 -10.18229 -9.80547 -9.70066 -9.58228 -9.32110 -9.06862 -8.55037 -8.23462 -6.50275 -6.21360 -3.92023 1.89936 2.34018 2.79382 2.91017 3.03852 3.22394 3.27021 3.32314 3.60607 3.97613 4.20906 4.26791 4.34559 4.49143 4.52143 4.72909 4.89661 4.90838 4.92902 4.98937 5.02786 5.13192 5.14348 5.17688 5.30448 5.34511 5.48577 5.52054 5.57360 5.60802 5.62013 5.67719 5.75135 5.79618 5.82706 5.92102 6.14810 6.16107 6.27264 6.36587 6.40792 7.14495 7.60168 7.62025 7.91208 8.36305 8.52345 9.24236 10.86155 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010687 B = 0.002825 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.305611 B = 9908.650635 C =11906.226699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.158 4.158 3 C -0.079 4.079 4 C -0.137 4.137 5 C 0.514 3.486 6 O -0.537 6.537 7 N -0.721 5.721 8 C 0.137 3.863 9 H 0.110 0.890 10 C 0.093 3.907 11 N -0.626 5.626 12 C 0.550 3.450 13 O -0.515 6.515 14 C -0.147 4.147 15 S -0.061 6.061 16 C -0.533 4.533 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.110 3.890 25 C -0.113 4.113 26 H 0.101 0.899 27 C -0.138 4.138 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.402 0.598 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.268 0.732 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.261 -21.803 -16.837 28.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.176 4.176 3 C -0.117 4.117 4 C -0.177 4.177 5 C 0.301 3.699 6 O -0.413 6.413 7 N -0.374 5.374 8 C 0.032 3.968 9 H 0.128 0.872 10 C -0.032 4.032 11 N -0.364 5.364 12 C 0.339 3.661 13 O -0.389 6.389 14 C -0.297 4.297 15 S 0.165 5.835 16 C -0.682 4.682 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.205 1.205 24 C -0.013 4.013 25 C -0.132 4.132 26 H 0.119 0.881 27 C -0.196 4.196 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.126 0.874 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.237 0.763 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.850 -21.157 -15.598 27.163 hybrid contribution -1.506 0.494 -1.218 1.999 sum 5.344 -20.663 -16.817 27.172 Atomic orbital electron populations 1.23924 0.96034 1.02044 1.00665 1.22948 0.96102 0.98248 1.00348 1.20501 0.97829 0.95590 0.97786 1.21637 0.99088 0.95343 1.01589 1.20773 0.79310 0.89057 0.80788 1.90731 1.65010 1.48198 1.37351 1.46070 1.40974 1.19544 1.30855 1.21945 0.90686 0.83684 1.00527 0.87202 1.22459 0.98482 0.99602 0.82662 1.48488 1.38446 1.37572 1.11868 1.20029 0.83394 0.80113 0.82612 1.90710 1.55368 1.69005 1.23830 1.23510 0.98565 0.99941 1.07721 1.85369 1.48079 1.41261 1.08755 1.22899 1.22170 1.22357 1.00748 0.90875 1.24993 0.97247 0.96828 0.94532 1.70027 1.41032 1.34833 1.04434 0.86111 0.80717 0.79853 0.78801 1.19576 1.20551 1.20549 1.22315 0.91302 0.91703 0.95996 1.22788 0.95786 0.99747 0.94912 0.88105 1.21634 1.00881 0.94711 1.02344 0.88391 0.88479 0.87368 0.90573 0.90223 0.88746 0.88597 0.76260 0.90275 0.90883 0.89265 0.89389 0.92240 0.89980 0.91803 0.91816 0.91668 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.25 14.32 29.01 0.42 -0.83 16 2 C -0.16 -1.01 9.52 -36.03 -0.34 -1.35 16 3 C -0.08 -0.59 4.95 -27.89 -0.14 -0.73 16 4 C -0.14 -0.84 5.68 -27.88 -0.16 -1.00 16 5 C 0.51 4.62 7.83 -10.98 -0.09 4.53 16 6 O -0.54 -6.97 15.67 5.56 0.09 -6.88 16 7 N -0.72 -5.35 4.51 -52.03 -0.23 -5.58 16 8 C 0.14 1.19 3.04 -66.10 -0.20 0.99 16 9 H 0.11 1.00 7.62 -51.93 -0.40 0.60 16 10 C 0.09 1.08 6.23 -3.06 -0.02 1.06 16 11 N -0.63 -8.88 3.33 -170.23 -0.57 -9.45 16 12 C 0.55 10.69 7.87 -10.99 -0.09 10.61 16 13 O -0.52 -11.93 16.12 5.56 0.09 -11.84 16 14 C -0.15 -3.10 5.35 36.00 0.19 -2.90 16 15 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 16 C -0.53 -15.43 9.50 30.94 0.29 -15.13 16 17 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 18 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 19 N -0.87 -26.38 13.22 55.49 0.73 -25.65 16 20 Si 0.92 21.69 29.55 -169.99 -5.02 16.67 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 C 0.11 1.18 6.37 -2.27 -0.01 1.17 16 25 C -0.11 -0.83 3.53 -88.21 -0.31 -1.15 16 26 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 27 C -0.14 -0.70 8.86 37.16 0.33 -0.37 16 28 H 0.10 0.67 7.84 -52.49 -0.41 0.25 16 29 H 0.10 0.53 8.06 -52.49 -0.42 0.10 16 30 H 0.11 0.54 8.06 -52.49 -0.42 0.12 16 31 H 0.08 0.68 7.75 -51.93 -0.40 0.28 16 32 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 33 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.40 2.16 7.01 -40.82 -0.29 1.87 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.93 8.04 -51.93 -0.42 0.51 16 38 H 0.09 1.77 8.14 -51.91 -0.42 1.34 16 39 H 0.09 1.76 8.14 -51.91 -0.42 1.34 16 40 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.08 0.98 8.04 -51.93 -0.42 0.56 16 42 H 0.06 0.62 8.00 -51.93 -0.42 0.21 16 43 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.06 0.24 6.44 -51.93 -0.33 -0.10 16 LS Contribution 389.03 15.07 5.86 5.86 Total: -1.00 -36.37 389.03 -8.76 -45.13 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -7.27 Total: -1.25 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -0.22 Total: -3.09 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: -0.07 Total: -40.68 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: 0.18 Total: -18.73 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.37 -8.76 -45.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071653607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.961 kcal (2) G-P(sol) polarization free energy of solvation -36.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds