Wall clock time and date at job start Tue Mar 31 2020 14:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50696 * 119.99724 * 2 1 4 4 C 1.52997 * 109.47055 * 124.99964 * 3 2 1 5 5 C 1.50706 * 109.47238 * 179.97438 * 4 3 2 6 6 O 1.21279 * 119.99507 * 0.02562 * 5 4 3 7 7 N 1.34774 * 120.00020 * 180.02562 * 5 4 3 8 8 C 1.46496 * 119.99544 * 180.02562 * 7 5 4 9 9 H 1.08997 * 110.64815 * 325.69794 * 8 7 5 10 10 C 1.54324 * 110.72462 * 88.84413 * 8 7 5 11 11 N 1.47022 * 107.26938 * 96.16567 * 10 8 7 12 12 C 1.34784 * 125.64445 * 178.90985 * 11 10 8 13 13 O 1.21282 * 119.99672 * 180.02562 * 12 11 10 14 14 C 1.50692 * 120.00158 * 0.02562 * 12 11 10 15 15 S 1.80998 * 109.47251 * 180.02562 * 14 12 11 16 16 C 1.76206 * 100.00124 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99989 * 359.97438 * 16 15 14 18 18 C 1.38794 * 120.00029 * 179.97438 * 16 15 14 19 19 N 1.31627 * 120.00216 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00035 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47180 * 359.97438 * 20 18 16 22 22 H 1.48506 * 109.47117 * 120.00121 * 20 18 16 23 23 H 1.48495 * 109.47165 * 239.99836 * 20 18 16 24 24 C 1.47416 * 108.70846 * 358.94297 * 11 10 8 25 25 C 1.55162 * 110.71729 * 202.55676 * 8 7 5 26 26 H 1.09003 * 111.00353 * 159.06378 * 25 8 7 27 27 C 1.53007 * 111.00445 * 35.21531 * 25 8 7 28 28 H 1.07995 * 120.00363 * 359.97438 * 1 2 3 29 29 H 1.08001 * 119.99592 * 180.02562 * 1 2 3 30 30 H 1.08001 * 119.99936 * 179.97438 * 2 1 3 31 31 H 1.09001 * 109.47328 * 5.00234 * 3 2 1 32 32 H 1.09004 * 109.47043 * 245.00045 * 3 2 1 33 33 H 1.09001 * 109.46832 * 59.99966 * 4 3 2 34 34 H 1.09000 * 109.47611 * 300.00263 * 4 3 2 35 35 H 0.96994 * 119.99756 * 0.02562 * 7 5 4 36 36 H 1.08996 * 109.88657 * 215.58464 * 10 8 7 37 37 H 1.08999 * 109.87531 * 336.75147 * 10 8 7 38 38 H 1.09008 * 109.47148 * 300.00158 * 14 12 11 39 39 H 1.09005 * 109.47676 * 59.99667 * 14 12 11 40 40 H 0.97003 * 120.00511 * 179.97438 * 19 18 16 41 41 H 1.08998 * 110.36993 * 142.96573 * 24 11 10 42 42 H 1.09004 * 110.37060 * 265.29222 * 24 11 10 43 43 H 1.09001 * 109.47146 * 59.99733 * 27 25 8 44 44 H 1.08994 * 109.47012 * 179.97438 * 27 25 8 45 45 H 1.08997 * 109.46698 * 299.99970 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7889 2.6380 1.1813 6 8 3.5703 3.4644 0.3209 7 7 4.7060 2.8866 2.1370 8 6 5.4384 4.1554 2.1370 9 1 5.6194 4.4947 1.1171 10 6 4.6736 5.2275 2.9414 11 7 5.2400 5.2418 4.2981 12 6 4.8570 6.0573 5.3006 13 8 5.3970 5.9813 6.3839 14 6 3.7579 7.0633 5.0754 15 16 3.4770 8.0010 6.5979 16 6 2.1828 9.0709 6.0639 17 1 1.8127 9.0072 5.0513 18 6 1.6389 9.9955 6.9446 19 7 2.0896 10.0729 8.1789 20 14 0.2674 11.1303 6.3784 21 1 -0.0557 10.8455 4.9573 22 1 -0.9385 10.9053 7.2154 23 1 0.7064 12.5425 6.5122 24 6 6.2967 4.2173 4.3802 25 6 6.7740 4.0182 2.9149 26 1 7.4777 4.7980 2.6235 27 6 7.3845 2.6295 2.7158 28 1 -0.5400 0.9352 0.0004 29 1 -0.5399 -0.9354 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6212 1.4026 -0.9314 33 1 3.7399 0.5066 1.0920 34 1 2.4772 1.2355 2.1130 35 1 4.8811 2.2255 2.8249 36 1 4.8039 6.2040 2.4750 37 1 3.6146 4.9732 2.9845 38 1 4.0483 7.7461 4.2769 39 1 2.8418 6.5439 4.7939 40 1 1.7098 10.7193 8.7944 41 1 7.1195 4.5698 5.0021 42 1 5.8923 3.2860 4.7768 43 1 7.5792 2.4667 1.6558 44 1 8.3197 2.5607 3.2714 45 1 6.6896 1.8719 3.0781 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071653607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:26 Heat of formation + Delta-G solvation = -84.506541 kcal Electronic energy + Delta-G solvation = -25013.045588 eV Core-core repulsion = 21348.876246 eV Total energy + Delta-G solvation = -3664.169342 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.64391 -40.46981 -38.80026 -36.26116 -35.22810 -34.62350 -33.56141 -31.73727 -30.98590 -29.82282 -27.79140 -26.95936 -25.64347 -23.90819 -21.70332 -21.07481 -20.75983 -20.63481 -19.58473 -18.34628 -17.90639 -17.59723 -16.92690 -16.87666 -16.71620 -16.44270 -15.88727 -15.58572 -15.41476 -15.11332 -14.82098 -14.65006 -14.50017 -14.01556 -13.81320 -13.56152 -13.48711 -13.40399 -13.21588 -13.17605 -12.98463 -12.93596 -12.66233 -12.40197 -11.98661 -11.96719 -11.88283 -11.76878 -11.68667 -11.18995 -11.08433 -10.91529 -10.34378 -10.23916 -10.16159 -9.76853 -8.72106 -8.38402 -6.17293 1.19793 1.38962 1.40296 1.41520 1.48777 1.54558 1.64662 2.00833 2.20318 2.23645 2.95648 3.11534 3.32524 3.45945 3.76023 3.76356 3.85034 4.00199 4.12021 4.19301 4.21820 4.28938 4.37549 4.38496 4.47317 4.48034 4.57281 4.66545 4.70582 4.78700 4.80166 4.96807 5.04983 5.09964 5.15697 5.22833 5.24135 5.38204 5.40600 5.47698 5.77473 5.92666 6.16338 6.26762 6.53499 7.02785 7.03977 7.25904 8.71195 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010687 B = 0.002825 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.305611 B = 9908.650635 C =11906.226699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.155 4.155 3 C -0.080 4.080 4 C -0.129 4.129 5 C 0.512 3.488 6 O -0.581 6.581 7 N -0.710 5.710 8 C 0.146 3.854 9 H 0.112 0.888 10 C 0.086 3.914 11 N -0.613 5.613 12 C 0.549 3.451 13 O -0.561 6.561 14 C -0.123 4.123 15 S -0.144 6.144 16 C -0.547 4.547 17 H 0.079 0.921 18 C 0.015 3.985 19 N -0.909 5.909 20 Si 0.999 3.001 21 H -0.260 1.260 22 H -0.271 1.271 23 H -0.272 1.272 24 C 0.102 3.898 25 C -0.094 4.094 26 H 0.106 0.894 27 C -0.134 4.134 28 H 0.088 0.912 29 H 0.110 0.890 30 H 0.129 0.871 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.127 0.873 34 H 0.107 0.893 35 H 0.415 0.585 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.272 0.728 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.343 -23.658 -18.730 30.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.173 4.173 3 C -0.118 4.118 4 C -0.169 4.169 5 C 0.301 3.699 6 O -0.461 6.461 7 N -0.363 5.363 8 C 0.040 3.960 9 H 0.130 0.870 10 C -0.038 4.038 11 N -0.348 5.348 12 C 0.337 3.663 13 O -0.440 6.440 14 C -0.274 4.274 15 S 0.084 5.916 16 C -0.695 4.695 17 H 0.097 0.903 18 C -0.190 4.190 19 N -0.546 5.546 20 Si 0.821 3.179 21 H -0.183 1.183 22 H -0.197 1.197 23 H -0.197 1.197 24 C -0.020 4.020 25 C -0.113 4.113 26 H 0.124 0.876 27 C -0.192 4.192 28 H 0.106 0.894 29 H 0.128 0.872 30 H 0.147 0.853 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.145 0.855 34 H 0.126 0.874 35 H 0.253 0.747 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.956 -23.073 -17.519 29.794 hybrid contribution -1.479 0.984 -0.709 1.913 sum 5.477 -22.089 -18.228 29.158 Atomic orbital electron populations 1.24046 0.96418 1.02262 1.01114 1.23037 0.96004 0.98393 0.99879 1.20458 0.97695 0.95461 0.98148 1.21655 0.99195 0.94653 1.01378 1.21295 0.79041 0.89501 0.80112 1.90719 1.66377 1.49791 1.39185 1.45980 1.40299 1.19211 1.30808 1.21815 0.90797 0.83355 1.00053 0.87003 1.22687 0.98424 1.01165 0.81553 1.48369 1.38404 1.36498 1.11563 1.19656 0.82986 0.80617 0.83065 1.90689 1.56877 1.70568 1.25833 1.23313 1.00096 0.99944 1.04010 1.85484 1.48716 1.43073 1.14364 1.23198 1.22380 1.22789 1.01150 0.90302 1.26122 0.99976 0.98453 0.94456 1.70177 1.42688 1.35843 1.05878 0.84900 0.76924 0.77296 0.78794 1.18329 1.19667 1.19683 1.22644 0.89978 0.90972 0.98425 1.22732 0.95107 1.01797 0.91703 0.87600 1.21644 1.01332 0.92999 1.03193 0.89390 0.87221 0.85287 0.92950 0.91022 0.85502 0.87450 0.74692 0.90125 0.91744 0.87977 0.88291 0.91854 0.91180 0.90149 0.90865 0.90950 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.42 14.32 67.78 0.97 -1.45 16 2 C -0.16 -1.68 9.52 25.64 0.24 -1.44 16 3 C -0.08 -1.09 4.95 29.85 0.15 -0.94 16 4 C -0.13 -1.25 5.68 29.85 0.17 -1.08 16 5 C 0.51 8.20 7.83 87.66 0.69 8.89 16 6 O -0.58 -14.65 15.67 -3.02 -0.05 -14.69 16 7 N -0.71 -8.59 4.51 -436.92 -1.97 -10.56 16 8 C 0.15 2.20 3.04 46.18 0.14 2.34 16 9 H 0.11 1.79 7.62 -2.39 -0.02 1.77 16 10 C 0.09 1.89 6.23 86.73 0.54 2.43 16 11 N -0.61 -16.90 3.33 -810.86 -2.70 -19.60 16 12 C 0.55 21.58 7.87 87.65 0.69 22.27 16 13 O -0.56 -26.79 16.12 -3.04 -0.05 -26.83 16 14 C -0.12 -5.24 5.35 71.23 0.38 -4.86 16 15 S -0.14 -8.21 20.57 -56.49 -1.16 -9.37 16 16 C -0.55 -32.14 9.50 67.95 0.65 -31.49 16 17 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 18 C 0.01 0.86 5.49 84.86 0.47 1.33 16 19 N -0.91 -56.45 13.22 21.65 0.29 -56.16 16 20 Si 1.00 44.49 29.55 68.60 2.03 46.52 16 21 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 22 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 24 C 0.10 2.01 6.37 87.02 0.55 2.56 16 25 C -0.09 -1.13 3.53 -9.23 -0.03 -1.17 16 26 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 27 C -0.13 -0.86 8.86 71.98 0.64 -0.22 16 28 H 0.09 1.20 7.84 -2.91 -0.02 1.18 16 29 H 0.11 1.01 8.06 -2.91 -0.02 0.99 16 30 H 0.13 0.87 8.06 -2.91 -0.02 0.85 16 31 H 0.05 0.95 7.75 -2.39 -0.02 0.93 16 32 H 0.07 1.09 8.10 -2.38 -0.02 1.07 16 33 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.41 2.94 7.01 -92.71 -0.65 2.29 16 36 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.06 1.57 8.04 -2.39 -0.02 1.55 16 38 H 0.10 4.06 8.14 -2.39 -0.02 4.04 16 39 H 0.10 3.97 8.14 -2.39 -0.02 3.95 16 40 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 41 H 0.07 1.61 8.04 -2.39 -0.02 1.59 16 42 H 0.08 1.37 8.00 -2.39 -0.02 1.35 16 43 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.07 0.28 6.44 -2.39 -0.02 0.27 16 Total: -1.00 -82.55 389.03 2.95 -79.60 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 0.32 Total: 13.93 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 6.24 Total: -2.83 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -4.38 Total: -86.32 kcal Atomic # 8 Polarization: -41.43 SS G_CDS: -0.10 Total: -41.53 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: -8.21 SS G_CDS: -1.16 Total: -9.37 kcal Total: -82.55 2.95 -79.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071653607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.910 kcal (2) G-P(sol) polarization free energy of solvation -82.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds