Wall clock time and date at job start Tue Mar 31 2020 14:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50704 * 119.99961 * 2 1 4 4 C 1.52999 * 109.47204 * 124.99595 * 3 2 1 5 5 C 1.50696 * 109.47210 * 179.97438 * 4 3 2 6 6 O 1.21291 * 119.99822 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00632 * 180.02562 * 5 4 3 8 8 C 1.46491 * 120.00741 * 180.02562 * 7 5 4 9 9 H 1.09003 * 110.91720 * 31.09640 * 8 7 5 10 10 C 1.54907 * 111.00541 * 267.19716 * 8 7 5 11 11 N 1.47429 * 104.83247 * 278.93185 * 10 8 7 12 12 C 1.34776 * 125.64830 * 155.90558 * 11 10 8 13 13 O 1.21283 * 119.99550 * 179.97438 * 12 11 10 14 14 C 1.50699 * 120.00194 * 359.97438 * 12 11 10 15 15 S 1.81006 * 109.47036 * 179.97438 * 14 12 11 16 16 C 1.76197 * 99.99817 * 180.02562 * 15 14 12 17 17 H 1.08009 * 120.00294 * 0.02562 * 16 15 14 18 18 C 1.38794 * 119.99905 * 179.97438 * 16 15 14 19 19 N 1.31633 * 120.00298 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00103 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46894 * 59.99966 * 20 18 16 22 22 H 1.48497 * 109.47127 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46775 * 300.00519 * 20 18 16 24 24 C 1.47321 * 108.73497 * 335.71735 * 11 10 8 25 25 C 1.54320 * 107.11761 * 1.29676 * 24 11 10 26 26 H 1.08997 * 110.72268 * 263.52665 * 25 24 11 27 27 C 1.53006 * 110.71866 * 140.43289 * 25 24 11 28 28 H 1.08003 * 119.99821 * 0.02562 * 1 2 3 29 29 H 1.07987 * 119.99687 * 180.02562 * 1 2 3 30 30 H 1.07995 * 120.00040 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.46872 * 4.99512 * 3 2 1 32 32 H 1.09001 * 109.46669 * 245.00050 * 3 2 1 33 33 H 1.09004 * 109.46562 * 59.99970 * 4 3 2 34 34 H 1.08996 * 109.47083 * 300.00244 * 4 3 2 35 35 H 0.97006 * 119.99380 * 0.02562 * 7 5 4 36 36 H 1.09006 * 110.36856 * 37.76888 * 10 8 7 37 37 H 1.09000 * 110.37252 * 160.09520 * 10 8 7 38 38 H 1.08994 * 109.47268 * 299.99983 * 14 12 11 39 39 H 1.09001 * 109.46587 * 60.00001 * 14 12 11 40 40 H 0.96993 * 119.99953 * 179.97438 * 19 18 16 41 41 H 1.09001 * 110.05764 * 241.87153 * 24 11 10 42 42 H 1.09002 * 109.85230 * 120.61110 * 24 11 10 43 43 H 1.09001 * 109.47002 * 303.83955 * 27 25 24 44 44 H 1.08993 * 109.46955 * 63.84392 * 27 25 24 45 45 H 1.09000 * 109.47050 * 183.84221 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0350 1.3332 1.1817 5 6 3.7890 2.6380 1.1813 6 8 3.5704 3.4644 0.3208 7 7 4.7061 2.8868 2.1370 8 6 5.4386 4.1554 2.1370 9 1 4.8269 4.9580 1.7249 10 6 6.7757 4.0245 1.3659 11 7 7.7064 3.4048 2.3268 12 6 8.8056 2.6930 2.0082 13 8 9.5020 2.2277 2.8854 14 6 9.1694 2.4753 0.5621 15 16 10.6848 1.4904 0.4629 16 6 10.8721 1.3925 -1.2864 17 1 10.1520 1.8705 -1.9342 18 6 11.9454 0.7020 -1.8318 19 7 12.8233 0.1199 -1.0424 20 14 12.1444 0.5988 -3.6864 21 1 12.2761 1.9676 -4.2470 22 1 13.3609 -0.1887 -4.0107 23 1 10.9538 -0.0650 -4.2757 24 6 7.2390 3.6959 3.6932 25 6 5.9351 4.5110 3.5633 26 1 6.1378 5.5788 3.6460 27 6 4.9154 4.0725 4.6165 28 1 -0.5400 0.9354 -0.0004 29 1 -0.5399 -0.9352 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3586 2.1317 0.0895 32 1 2.6213 1.4026 -0.9314 33 1 3.7400 0.5066 1.0921 34 1 2.4772 1.2357 2.1130 35 1 4.8811 2.2256 2.8250 36 1 6.6492 3.3838 0.4932 37 1 7.1388 5.0077 1.0664 38 1 8.3592 1.9477 0.0591 39 1 9.3306 3.4390 0.0790 40 1 13.5731 -0.3629 -1.4236 41 1 7.9887 4.2787 4.2286 42 1 7.0425 2.7641 4.2236 43 1 4.7363 3.0013 4.5248 44 1 5.3031 4.2924 5.6111 45 1 3.9805 4.6116 4.4636 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071653608.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:30 Heat of formation + Delta-G solvation = -60.677954 kcal Electronic energy + Delta-G solvation = -25225.629829 eV Core-core repulsion = 21562.493772 eV Total energy + Delta-G solvation = -3663.136057 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.70525 -39.34148 -37.63589 -35.64811 -34.14109 -32.77255 -32.43046 -31.11829 -29.49079 -28.96964 -26.20160 -25.41852 -24.94905 -22.94007 -20.97667 -20.28847 -20.07531 -19.34403 -17.74596 -17.40356 -16.87836 -16.43873 -16.11057 -15.70281 -15.09723 -14.87779 -14.79768 -14.63919 -14.27238 -14.00999 -13.77473 -13.50534 -13.31584 -13.05688 -12.81886 -12.61075 -12.48566 -12.39268 -12.36359 -11.95462 -11.59376 -11.41337 -11.33912 -11.28450 -11.10232 -11.03601 -11.03065 -10.76557 -10.13459 -9.83176 -9.63684 -9.55951 -9.34312 -9.05984 -8.51315 -8.25100 -6.51197 -6.21741 -3.92732 1.94577 2.39125 2.86122 2.88888 3.03986 3.24032 3.26011 3.29449 3.59560 4.01221 4.20604 4.27276 4.39098 4.49567 4.59930 4.77036 4.89743 4.94400 4.96568 5.01165 5.04869 5.13311 5.20168 5.25107 5.33926 5.37517 5.49465 5.50889 5.57097 5.60615 5.67175 5.67778 5.74038 5.83774 5.85375 5.91552 6.13274 6.19700 6.32366 6.36664 6.45279 7.20390 7.59023 7.61317 7.96325 8.35130 8.52310 9.23529 10.85653 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.009613 B = 0.003188 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.153993 B = 8781.068403 C =10967.013312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.154 4.154 3 C -0.079 4.079 4 C -0.138 4.138 5 C 0.515 3.485 6 O -0.539 6.539 7 N -0.718 5.718 8 C 0.135 3.865 9 H 0.113 0.887 10 C 0.090 3.910 11 N -0.626 5.626 12 C 0.549 3.451 13 O -0.515 6.515 14 C -0.147 4.147 15 S -0.060 6.060 16 C -0.535 4.535 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.918 3.082 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.111 3.889 25 C -0.111 4.111 26 H 0.100 0.900 27 C -0.139 4.139 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.403 0.597 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.269 0.731 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.645 6.251 8.878 26.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.172 4.172 3 C -0.117 4.117 4 C -0.177 4.177 5 C 0.302 3.698 6 O -0.416 6.416 7 N -0.371 5.371 8 C 0.029 3.971 9 H 0.131 0.869 10 C -0.035 4.035 11 N -0.364 5.364 12 C 0.338 3.662 13 O -0.389 6.389 14 C -0.297 4.297 15 S 0.167 5.833 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.012 4.012 25 C -0.131 4.131 26 H 0.118 0.882 27 C -0.197 4.197 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.128 0.872 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.238 0.762 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.508 5.990 9.552 25.174 hybrid contribution -0.487 0.118 -1.905 1.970 sum -22.994 6.108 7.647 24.990 Atomic orbital electron populations 1.23872 0.95969 1.01849 1.01434 1.23003 0.96105 0.98475 0.99629 1.20503 0.97713 0.95378 0.98092 1.21638 0.99183 0.95641 1.01282 1.20761 0.79238 0.89000 0.80751 1.90719 1.66085 1.48061 1.36721 1.45960 1.40426 1.19613 1.31068 1.22088 0.92148 0.87292 0.95561 0.86941 1.22753 0.88325 0.99168 0.93242 1.48575 1.26308 1.54707 1.06765 1.20029 0.78430 0.76551 0.91223 1.90711 1.49665 1.48327 1.50237 1.23508 1.06335 1.05578 0.94281 1.85364 1.23156 1.65615 1.09206 1.22818 1.14165 1.40063 0.91308 0.90993 1.24986 0.94743 0.94590 0.99195 1.70006 1.12799 1.32317 1.35217 0.86227 0.77768 0.78403 0.83139 1.19899 1.20790 1.19910 1.22020 0.94866 0.99380 0.84979 1.22568 0.94914 1.01311 0.94278 0.88212 1.21698 0.98369 1.01451 0.98181 0.88586 0.88508 0.87177 0.90777 0.90006 0.88436 0.88782 0.76174 0.89899 0.90289 0.89458 0.89326 0.92121 0.91163 0.91404 0.92416 0.91773 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.33 14.32 29.01 0.42 -0.91 16 2 C -0.15 -1.13 9.52 -36.03 -0.34 -1.47 16 3 C -0.08 -0.66 4.95 -27.88 -0.14 -0.79 16 4 C -0.14 -1.00 5.68 -27.89 -0.16 -1.16 16 5 C 0.52 5.06 7.83 -10.99 -0.09 4.97 16 6 O -0.54 -7.25 15.62 5.55 0.09 -7.16 16 7 N -0.72 -5.97 4.53 -51.74 -0.23 -6.20 16 8 C 0.14 1.17 3.18 -65.79 -0.21 0.96 16 9 H 0.11 1.00 7.54 -51.93 -0.39 0.60 16 10 C 0.09 1.01 6.38 -2.53 -0.02 1.00 16 11 N -0.63 -8.69 3.33 -170.28 -0.57 -9.26 16 12 C 0.55 10.54 7.87 -10.99 -0.09 10.45 16 13 O -0.52 -11.84 16.19 5.55 0.09 -11.75 16 14 C -0.15 -3.06 5.16 36.01 0.19 -2.87 16 15 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 16 C -0.54 -15.41 9.50 30.94 0.29 -15.11 16 17 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 18 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 19 N -0.87 -26.30 13.22 55.49 0.73 -25.56 16 20 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 C 0.11 1.18 6.48 -2.90 -0.02 1.16 16 25 C -0.11 -0.80 3.41 -88.78 -0.30 -1.10 16 26 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 27 C -0.14 -0.76 8.75 37.16 0.33 -0.44 16 28 H 0.10 0.62 7.84 -52.48 -0.41 0.21 16 29 H 0.10 0.56 8.06 -52.49 -0.42 0.14 16 30 H 0.11 0.73 8.06 -52.49 -0.42 0.31 16 31 H 0.07 0.65 7.75 -51.93 -0.40 0.25 16 32 H 0.08 0.80 8.10 -51.93 -0.42 0.37 16 33 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.40 2.78 7.15 -40.82 -0.29 2.49 16 36 H 0.08 1.06 7.48 -51.93 -0.39 0.67 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.09 1.72 7.85 -51.92 -0.41 1.32 16 39 H 0.09 1.75 8.14 -51.91 -0.42 1.32 16 40 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.73 7.80 -51.93 -0.41 0.33 16 43 H 0.06 0.30 6.43 -51.93 -0.33 -0.03 16 44 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 388.17 15.07 5.85 5.85 Total: -1.00 -35.97 388.17 -8.74 -44.71 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -7.22 Total: -0.05 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -0.23 Total: -3.27 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: -0.07 Total: -41.03 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: 0.18 Total: -18.92 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.97 -8.74 -44.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071653608.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.967 kcal (2) G-P(sol) polarization free energy of solvation -35.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds