Wall clock time and date at job start Tue Mar 31 2020 14:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50700 * 119.99543 * 2 1 4 4 C 1.53004 * 109.46605 * 125.00210 * 3 2 1 5 5 C 1.50707 * 109.46913 * 179.97438 * 4 3 2 6 6 O 1.21281 * 119.99664 * 0.02562 * 5 4 3 7 7 N 1.34778 * 119.99872 * 180.02562 * 5 4 3 8 8 C 1.46494 * 119.99999 * 180.02562 * 7 5 4 9 9 H 1.09002 * 110.88730 * 328.88352 * 8 7 5 10 10 C 1.54915 * 111.00409 * 92.80162 * 8 7 5 11 11 N 1.47428 * 104.83102 * 155.08482 * 10 8 7 12 12 C 1.34778 * 125.64860 * 155.91040 * 11 10 8 13 13 O 1.21278 * 119.99825 * 179.97438 * 12 11 10 14 14 C 1.50701 * 119.99622 * 359.97438 * 12 11 10 15 15 S 1.81000 * 109.46676 * 179.97438 * 14 12 11 16 16 C 1.76201 * 100.00088 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99925 * 359.97438 * 16 15 14 18 18 C 1.38800 * 120.00421 * 180.02562 * 16 15 14 19 19 N 1.31623 * 120.00348 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99802 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47150 * 89.99884 * 20 18 16 22 22 H 1.48500 * 109.47056 * 210.00334 * 20 18 16 23 23 H 1.48510 * 109.47036 * 330.00158 * 20 18 16 24 24 C 1.47486 * 108.75727 * 335.89255 * 11 10 8 25 25 C 1.54323 * 107.03754 * 1.02624 * 24 11 10 26 26 H 1.09002 * 110.72057 * 263.78860 * 25 24 11 27 27 C 1.53003 * 110.72065 * 140.69275 * 25 24 11 28 28 H 1.07998 * 119.99786 * 359.97438 * 1 2 3 29 29 H 1.07999 * 119.99497 * 179.97438 * 1 2 3 30 30 H 1.07994 * 119.99989 * 180.02562 * 2 1 3 31 31 H 1.09002 * 109.47380 * 5.00293 * 3 2 1 32 32 H 1.08995 * 109.46939 * 245.00020 * 3 2 1 33 33 H 1.09002 * 109.47184 * 59.99962 * 4 3 2 34 34 H 1.08995 * 109.47317 * 299.99578 * 4 3 2 35 35 H 0.97002 * 120.00010 * 359.97438 * 7 5 4 36 36 H 1.09000 * 110.36497 * 273.91911 * 10 8 7 37 37 H 1.08998 * 110.36590 * 36.24552 * 10 8 7 38 38 H 1.08997 * 109.47351 * 299.99464 * 14 12 11 39 39 H 1.08992 * 109.47253 * 60.00061 * 14 12 11 40 40 H 0.96996 * 120.00523 * 179.97438 * 19 18 16 41 41 H 1.09000 * 110.02886 * 241.65974 * 24 11 10 42 42 H 1.09005 * 109.96368 * 120.34831 * 24 11 10 43 43 H 1.08999 * 109.47063 * 303.84421 * 27 25 24 44 44 H 1.08998 * 109.46828 * 63.84307 * 27 25 24 45 45 H 1.08998 * 109.46992 * 183.83970 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.7889 2.6380 1.1814 6 8 3.5703 3.4644 0.3210 7 7 4.7061 2.8866 2.1371 8 6 5.4386 4.1553 2.1372 9 1 5.5727 4.5266 1.1212 10 6 4.7270 5.2072 3.0243 11 7 5.7928 6.1414 3.4305 12 6 5.6129 7.4236 3.8046 13 8 6.5668 8.1027 4.1203 14 6 4.2263 8.0134 3.8305 15 16 4.3146 9.7384 4.3717 16 6 2.6064 10.1660 4.3107 17 1 1.8767 9.4321 4.0020 18 6 2.1985 11.4464 4.6585 19 7 0.9225 11.7659 4.6125 20 14 3.4609 12.7165 5.1904 21 1 3.9447 13.4619 4.0007 22 1 2.8364 13.6640 6.1482 23 1 4.6052 12.0329 5.8453 24 6 7.0890 5.4414 3.3604 25 6 6.8033 4.0095 2.8608 26 1 6.7234 3.3173 3.6990 27 6 7.8877 3.5505 1.8838 28 1 -0.5400 0.9353 0.0004 29 1 -0.5399 -0.9353 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1317 0.0896 32 1 2.6212 1.4027 -0.9313 33 1 3.7400 0.5066 1.0920 34 1 2.4773 1.2356 2.1130 35 1 4.8807 2.2257 2.8254 36 1 3.9615 5.7309 2.4517 37 1 4.2870 4.7298 3.8998 38 1 3.7931 7.9675 2.8314 39 1 3.6035 7.4472 4.5230 40 1 0.6375 12.6606 4.8558 41 1 7.5474 5.4047 4.3487 42 1 7.7508 5.9527 2.6613 43 1 7.9599 4.2617 1.0609 44 1 8.8448 3.4967 2.4026 45 1 7.6308 2.5663 1.4921 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071653609.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:32 Heat of formation + Delta-G solvation = -88.137928 kcal Electronic energy + Delta-G solvation = -24832.586100 eV Core-core repulsion = 21168.259290 eV Total energy + Delta-G solvation = -3664.326811 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.54352 -40.55056 -38.81808 -36.27203 -35.33842 -34.71318 -33.83161 -31.76399 -31.06256 -29.63517 -27.94460 -27.03740 -25.70009 -23.71472 -21.82539 -21.23406 -20.80629 -20.63370 -19.67989 -18.28431 -18.05134 -17.66290 -17.17749 -16.86952 -16.58059 -16.53614 -15.81242 -15.69995 -15.37812 -14.97123 -14.81727 -14.74605 -14.51916 -14.41991 -14.08906 -13.70733 -13.49827 -13.40408 -13.32512 -13.14452 -13.04024 -13.00328 -12.72552 -12.33859 -12.16269 -11.97235 -11.89101 -11.88425 -11.71766 -11.20551 -11.15949 -10.93090 -10.60967 -10.25020 -10.16898 -9.80070 -9.05907 -8.54877 -6.27246 0.90145 1.29542 1.38288 1.41704 1.42528 1.49741 1.63434 1.85181 2.21866 2.27121 2.63241 2.83034 3.23030 3.43294 3.64623 3.76751 3.82061 4.00830 4.05128 4.12763 4.17869 4.22394 4.31703 4.41496 4.43831 4.49144 4.56905 4.67375 4.71598 4.77643 4.85709 4.97299 4.98840 5.08777 5.11014 5.16751 5.25177 5.35096 5.47607 5.67075 5.78065 5.93738 6.07296 6.20238 6.55897 6.89406 6.95446 7.28313 8.57874 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011876 B = 0.002717 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.190063 B =10302.767234 C =12437.482502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.154 4.154 3 C -0.083 4.083 4 C -0.125 4.125 5 C 0.509 3.491 6 O -0.587 6.587 7 N -0.702 5.702 8 C 0.144 3.856 9 H 0.087 0.913 10 C 0.083 3.917 11 N -0.614 5.614 12 C 0.549 3.451 13 O -0.557 6.557 14 C -0.105 4.105 15 S -0.167 6.167 16 C -0.531 4.531 17 H 0.059 0.941 18 C 0.046 3.954 19 N -0.917 5.917 20 Si 0.916 3.084 21 H -0.262 1.262 22 H -0.256 1.256 23 H -0.236 1.236 24 C 0.107 3.893 25 C -0.088 4.088 26 H 0.123 0.877 27 C -0.139 4.139 28 H 0.086 0.914 29 H 0.110 0.890 30 H 0.131 0.869 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.129 0.871 34 H 0.116 0.884 35 H 0.423 0.577 36 H 0.064 0.936 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.109 0.891 40 H 0.278 0.722 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.047 0.953 44 H 0.076 0.924 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.481 -31.323 -5.272 33.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.171 4.171 3 C -0.121 4.121 4 C -0.164 4.164 5 C 0.298 3.702 6 O -0.466 6.466 7 N -0.355 5.355 8 C 0.037 3.963 9 H 0.105 0.895 10 C -0.041 4.041 11 N -0.349 5.349 12 C 0.337 3.663 13 O -0.435 6.435 14 C -0.256 4.256 15 S 0.059 5.941 16 C -0.679 4.679 17 H 0.077 0.923 18 C -0.160 4.160 19 N -0.554 5.554 20 Si 0.738 3.262 21 H -0.187 1.187 22 H -0.180 1.180 23 H -0.160 1.160 24 C -0.015 4.015 25 C -0.108 4.108 26 H 0.141 0.859 27 C -0.197 4.197 28 H 0.105 0.895 29 H 0.129 0.871 30 H 0.149 0.851 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.147 0.853 34 H 0.134 0.866 35 H 0.262 0.738 36 H 0.083 0.917 37 H 0.112 0.888 38 H 0.120 0.880 39 H 0.128 0.872 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.066 0.934 44 H 0.095 0.905 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.575 -29.554 -5.365 31.845 hybrid contribution -1.429 0.245 -0.070 1.451 sum 9.146 -29.310 -5.435 31.181 Atomic orbital electron populations 1.24050 0.96434 1.02243 1.01114 1.23020 0.95954 0.98292 0.99879 1.20482 0.97816 0.95548 0.98269 1.21644 0.99073 0.94200 1.01514 1.21463 0.79088 0.89587 0.80091 1.90753 1.66459 1.50044 1.39363 1.45685 1.40199 1.18538 1.31118 1.21916 0.91091 0.84057 0.99272 0.89520 1.22906 0.90487 0.91178 0.99535 1.48351 1.10315 1.09661 1.66552 1.19577 0.89706 0.80716 0.76286 1.90685 1.43315 1.60113 1.49437 1.23214 0.97689 0.98740 1.05944 1.84611 1.10866 1.10208 1.88407 1.22429 0.91345 1.01523 1.52607 0.92295 1.25593 0.97179 0.99481 0.93734 1.70011 1.16121 1.21967 1.47330 0.85847 0.80376 0.79894 0.80124 1.18657 1.17962 1.15952 1.22339 0.84798 0.92125 1.02276 1.22478 0.93618 0.94937 0.99731 0.85883 1.21758 0.97915 1.01879 0.98102 0.89519 0.87132 0.85134 0.93092 0.91461 0.85304 0.86575 0.73795 0.91698 0.88791 0.88047 0.87244 0.91231 0.90358 0.91669 0.93408 0.90518 0.90487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.32 14.32 67.77 0.97 -1.34 16 2 C -0.15 -1.57 9.52 25.64 0.24 -1.32 16 3 C -0.08 -1.12 4.95 29.85 0.15 -0.98 16 4 C -0.12 -1.01 5.68 29.85 0.17 -0.84 16 5 C 0.51 7.91 7.83 87.66 0.69 8.59 16 6 O -0.59 -15.85 15.62 -3.03 -0.05 -15.89 16 7 N -0.70 -7.06 5.20 -435.96 -2.27 -9.32 16 8 C 0.14 2.23 2.87 46.39 0.13 2.36 16 9 H 0.09 1.84 7.45 -2.39 -0.02 1.82 16 10 C 0.08 1.76 6.39 86.86 0.55 2.32 16 11 N -0.61 -16.60 3.34 -810.59 -2.71 -19.30 16 12 C 0.55 20.73 7.87 87.66 0.69 21.42 16 13 O -0.56 -25.08 16.19 -3.02 -0.05 -25.13 16 14 C -0.11 -4.35 5.16 71.24 0.37 -3.98 16 15 S -0.17 -8.83 18.55 -56.49 -1.05 -9.88 16 16 C -0.53 -32.02 10.04 67.95 0.68 -31.34 16 17 H 0.06 3.77 8.03 -2.91 -0.02 3.74 16 18 C 0.05 2.74 5.50 84.86 0.47 3.21 16 19 N -0.92 -56.97 13.97 21.65 0.30 -56.67 16 20 Si 0.92 45.85 27.74 68.60 1.90 47.75 16 21 H -0.26 -12.81 7.11 99.48 0.71 -12.10 16 22 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 23 H -0.24 -11.74 6.74 99.48 0.67 -11.07 16 24 C 0.11 2.11 6.50 86.64 0.56 2.67 16 25 C -0.09 -0.96 3.18 -9.61 -0.03 -0.99 16 26 H 0.12 0.63 8.00 -2.39 -0.02 0.62 16 27 C -0.14 -1.21 9.14 71.98 0.66 -0.55 16 28 H 0.09 1.17 7.84 -2.91 -0.02 1.14 16 29 H 0.11 0.95 8.06 -2.91 -0.02 0.92 16 30 H 0.13 0.76 8.06 -2.91 -0.02 0.74 16 31 H 0.05 0.94 7.75 -2.39 -0.02 0.92 16 32 H 0.07 1.07 8.10 -2.39 -0.02 1.05 16 33 H 0.13 0.23 8.14 -2.39 -0.02 0.21 16 34 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.42 0.88 8.57 -92.71 -0.79 0.08 16 36 H 0.06 1.68 7.48 -2.39 -0.02 1.66 16 37 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.10 4.09 7.85 -2.40 -0.02 4.07 16 39 H 0.11 4.21 8.14 -2.40 -0.02 4.19 16 40 H 0.28 15.91 8.31 -92.71 -0.77 15.14 16 41 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.06 1.42 7.80 -2.38 -0.02 1.40 16 43 H 0.05 0.58 8.12 -2.39 -0.02 0.56 16 44 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -83.25 388.90 2.53 -80.71 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: 0.14 Total: 8.50 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: 6.30 Total: -0.78 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -4.67 Total: -85.29 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -0.10 Total: -41.02 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.90 Total: 47.75 kcal Atomic # 16 Polarization: -8.83 SS G_CDS: -1.05 Total: -9.88 kcal Total: -83.25 2.53 -80.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071653609.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.425 kcal (2) G-P(sol) polarization free energy of solvation -83.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds