Wall clock time and date at job start Tue Mar 31 2020 14:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 110.63906 * 2 1 4 4 C 1.54339 * 110.99872 * 236.92904 * 2 1 3 5 5 N 1.47015 * 107.26094 * 219.60031 * 4 2 1 6 6 C 1.34780 * 125.64739 * 178.84648 * 5 4 2 7 7 O 1.21280 * 120.00423 * 179.68855 * 6 5 4 8 8 C 1.50701 * 119.99795 * 359.69531 * 6 5 4 9 9 S 1.81002 * 109.47156 * 179.97438 * 8 6 5 10 10 C 1.76193 * 100.00049 * 180.02562 * 9 8 6 11 11 H 1.08005 * 120.00026 * 359.97438 * 10 9 8 12 12 C 1.38806 * 120.00056 * 180.02562 * 10 9 8 13 13 N 1.31623 * 119.99640 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00053 * 179.97438 * 12 10 9 15 15 H 1.48508 * 109.47315 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47332 * 119.99854 * 14 12 10 17 17 H 1.48499 * 109.47328 * 240.00154 * 14 12 10 18 18 C 1.47427 * 108.70863 * 358.58502 * 5 4 2 19 19 C 1.54913 * 104.82914 * 24.35548 * 18 5 4 20 20 H 1.08998 * 111.00280 * 81.10686 * 19 18 5 21 21 N 1.46491 * 111.00349 * 204.91746 * 19 18 5 22 22 C 1.34776 * 120.00353 * 273.54695 * 21 19 18 23 23 O 1.21282 * 119.99801 * 0.02562 * 22 21 19 24 24 C 1.50696 * 120.00518 * 180.02562 * 22 21 19 25 25 C 1.53007 * 115.54839 * 34.32640 * 24 22 21 26 26 C 1.53002 * 117.49864 * 248.62454 * 24 22 21 27 27 C 1.53000 * 59.99985 * 252.50497 * 26 24 22 28 28 H 1.09004 * 109.46835 * 296.85082 * 1 2 3 29 29 H 1.08999 * 109.47322 * 56.85433 * 1 2 3 30 30 H 1.09001 * 109.47097 * 176.85937 * 1 2 3 31 31 H 1.08994 * 109.98983 * 100.12498 * 4 2 1 32 32 H 1.08996 * 109.77601 * 338.95506 * 4 2 1 33 33 H 1.09002 * 109.47060 * 299.99722 * 8 6 5 34 34 H 1.09001 * 109.47380 * 59.99809 * 8 6 5 35 35 H 0.97010 * 119.99946 * 180.02562 * 13 12 10 36 36 H 1.09000 * 110.36996 * 143.19200 * 18 5 4 37 37 H 1.08998 * 110.36260 * 265.41081 * 18 5 4 38 38 H 0.97004 * 120.00127 * 93.54793 * 21 19 18 39 39 H 1.08997 * 109.46965 * 85.58638 * 25 24 22 40 40 H 1.09000 * 109.46991 * 205.58265 * 25 24 22 41 41 H 1.08996 * 109.47113 * 325.58449 * 25 24 22 42 42 H 1.08994 * 117.49726 * 359.97438 * 26 24 22 43 43 H 1.09000 * 117.49876 * 145.01673 * 26 24 22 44 44 H 1.09005 * 117.49676 * 252.51348 * 27 26 24 45 45 H 1.08999 * 117.49707 * 107.48592 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0831 -0.7863 -1.2075 5 7 3.2494 -1.5469 -0.7356 6 6 4.0004 -2.3784 -1.4847 7 8 4.9473 -2.9522 -0.9897 8 6 3.6635 -2.5950 -2.9375 9 16 4.8472 -3.7552 -3.6648 10 6 4.2352 -3.8221 -5.3157 11 1 3.3690 -3.2404 -5.5945 12 6 4.8658 -4.6232 -6.2577 13 7 5.9211 -5.3325 -5.9178 14 14 4.2165 -4.6946 -8.0078 15 1 3.0287 -3.8118 -8.1315 16 1 5.2727 -4.2385 -8.9466 17 1 3.8314 -6.0906 -8.3363 18 6 3.4653 -1.2447 0.6912 19 6 2.0790 -0.7935 1.2150 20 1 1.4472 -1.6530 1.4389 21 7 2.2176 0.0725 2.3885 22 6 2.3115 -0.4696 3.6188 23 8 2.2817 -1.6744 3.7545 24 6 2.4535 0.4212 4.8260 25 6 1.7113 1.7571 4.7512 26 6 3.7907 0.3961 5.5691 27 6 2.5554 -0.2547 6.1948 28 1 -0.3633 0.4642 0.9169 29 1 -0.3634 0.5619 -0.8604 30 1 -0.3633 -1.0261 -0.0563 31 1 2.3848 -0.0959 -1.9951 32 1 1.3216 -1.4700 -1.5825 33 1 2.6563 -3.0036 -3.0200 34 1 3.7145 -1.6442 -3.4680 35 1 6.3620 -5.8921 -6.5762 36 1 3.7993 -2.1365 1.2215 37 1 4.1944 -0.4423 0.8028 38 1 2.2418 1.0362 2.2800 39 1 0.6814 1.6194 5.0805 40 1 2.2050 2.4836 5.3966 41 1 1.7188 2.1199 3.7235 42 1 4.5675 -0.2651 5.1851 43 1 4.1419 1.3314 6.0049 44 1 2.0940 0.2525 7.0421 45 1 2.5197 -1.3438 6.2221 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071659706.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:22 Heat of formation + Delta-G solvation = -49.569084 kcal Electronic energy + Delta-G solvation = -25172.646218 eV Core-core repulsion = 21509.991878 eV Total energy + Delta-G solvation = -3662.654340 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.79181 -39.69179 -37.81068 -36.80090 -34.52337 -32.61705 -32.42143 -30.38973 -29.18846 -27.82788 -26.52596 -25.48844 -24.31977 -22.89201 -22.32502 -21.05926 -19.76180 -19.31760 -17.77411 -17.30908 -17.15895 -16.40124 -15.60430 -15.43399 -15.21933 -14.82108 -14.80095 -14.48451 -14.07193 -13.87229 -13.71413 -13.69671 -13.47154 -13.05733 -13.01416 -12.74803 -12.56065 -12.43282 -12.27899 -11.90514 -11.78582 -11.62970 -11.54055 -11.07171 -11.04496 -11.00951 -10.93941 -10.76102 -10.46196 -10.08565 -9.80939 -9.54294 -9.33381 -9.06947 -8.52296 -8.22071 -6.49682 -6.21119 -3.91708 2.16488 2.54734 3.00950 3.07602 3.21852 3.27104 3.31697 3.39480 3.62003 3.98740 4.16218 4.20295 4.30022 4.33934 4.39159 4.46656 4.49788 4.87968 5.03270 5.06212 5.07564 5.13418 5.14021 5.19947 5.22066 5.28088 5.31829 5.44010 5.49249 5.53341 5.59902 5.60174 5.67012 5.72128 5.75683 5.81831 5.85428 5.93773 6.08990 6.14031 6.39962 7.12602 7.60071 7.64118 7.90013 8.35894 8.55124 9.24092 10.86379 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.027526 B = 0.002278 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.988289 B =12288.462077 C =13013.554470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.108 4.108 3 H 0.090 0.910 4 C 0.108 3.892 5 N -0.625 5.625 6 C 0.549 3.451 7 O -0.512 6.512 8 C -0.146 4.146 9 S -0.061 6.061 10 C -0.534 4.534 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.099 3.901 19 C 0.137 3.863 20 H 0.106 0.894 21 N -0.715 5.715 22 C 0.551 3.449 23 O -0.531 6.531 24 C -0.171 4.171 25 C -0.113 4.113 26 C -0.149 4.149 27 C -0.144 4.144 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.268 0.732 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.402 0.598 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.103 0.897 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.434 19.049 20.424 30.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.128 4.128 3 H 0.108 0.892 4 C -0.016 4.016 5 N -0.363 5.363 6 C 0.337 3.663 7 O -0.386 6.386 8 C -0.296 4.296 9 S 0.166 5.834 10 C -0.682 4.682 11 H 0.091 0.909 12 C -0.137 4.137 13 N -0.502 5.502 14 Si 0.746 3.254 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.026 4.026 19 C 0.031 3.969 20 H 0.124 0.876 21 N -0.367 5.367 22 C 0.337 3.663 23 O -0.406 6.406 24 C -0.174 4.174 25 C -0.170 4.170 26 C -0.186 4.186 27 C -0.181 4.181 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.238 0.762 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.119 0.881 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.857 17.119 21.129 29.281 hybrid contribution -1.474 1.175 -1.864 2.651 sum -12.331 18.294 19.266 29.290 Atomic orbital electron populations 1.21774 0.93012 1.02881 1.02335 1.22489 0.97044 0.99622 0.93629 0.89155 1.22060 0.88336 0.94921 0.96267 1.48380 1.31211 1.46358 1.10387 1.20061 0.81401 0.77096 0.87714 1.90720 1.27806 1.46860 1.73182 1.23501 1.06385 1.05981 0.93753 1.85438 1.36247 1.53589 1.08165 1.22894 1.17645 1.32394 0.95288 0.90871 1.25003 0.94729 0.94622 0.99305 1.70031 1.18920 1.26414 1.34869 0.86108 0.78762 0.78072 0.82492 1.19620 1.20571 1.20562 1.22473 0.96345 1.01680 0.82065 1.22193 0.96584 0.94056 0.84060 0.87599 1.45786 1.75241 1.10223 1.05490 1.19532 0.75299 0.88081 0.83404 1.90747 1.49053 1.14871 1.85955 1.21494 1.04213 0.98689 0.93003 1.21344 1.00161 0.93090 1.02396 1.23131 0.90413 1.03395 1.01675 1.23046 1.00543 1.01481 0.93042 0.92066 0.91690 0.91847 0.90760 0.90691 0.89224 0.89269 0.92230 0.89808 0.91559 0.76230 0.91510 0.91345 0.91986 0.88108 0.87678 0.87888 0.87322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.17 37.16 0.34 -0.52 16 2 C -0.11 -0.81 3.15 -88.78 -0.28 -1.09 16 3 H 0.09 0.52 8.00 -51.93 -0.42 0.10 16 4 C 0.11 1.13 6.10 -3.06 -0.02 1.11 16 5 N -0.63 -9.35 3.33 -170.52 -0.57 -9.91 16 6 C 0.55 10.99 7.87 -10.98 -0.09 10.91 16 7 O -0.51 -12.42 16.12 5.56 0.09 -12.33 16 8 C -0.15 -3.04 5.35 36.01 0.19 -2.84 16 9 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 10 C -0.53 -15.32 9.50 30.94 0.29 -15.02 16 11 H 0.07 1.98 7.80 -52.48 -0.41 1.58 16 12 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 13 N -0.87 -26.38 13.22 55.49 0.73 -25.64 16 14 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 15 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 C 0.10 1.32 6.60 -2.53 -0.02 1.30 16 19 C 0.14 1.35 2.76 -65.79 -0.18 1.16 16 20 H 0.11 1.24 7.64 -51.93 -0.40 0.85 16 21 N -0.72 -5.70 5.13 -51.74 -0.27 -5.96 16 22 C 0.55 5.63 7.39 -10.99 -0.08 5.55 16 23 O -0.53 -7.79 16.00 5.56 0.09 -7.70 16 24 C -0.17 -1.22 2.61 -155.66 -0.41 -1.63 16 25 C -0.11 -0.48 9.79 37.16 0.36 -0.12 16 26 C -0.15 -0.97 9.88 -26.73 -0.26 -1.24 16 27 C -0.14 -1.01 9.76 -26.73 -0.26 -1.27 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.76 7.78 -51.93 -0.40 0.36 16 33 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 34 H 0.09 1.71 8.14 -51.91 -0.42 1.28 16 35 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.08 1.36 8.04 -51.93 -0.42 0.94 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.40 2.03 6.81 -40.82 -0.28 1.75 16 39 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.07 0.22 7.90 -51.93 -0.41 -0.19 16 41 H 0.06 0.19 6.38 -51.93 -0.33 -0.14 16 42 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.10 0.47 8.05 -51.93 -0.42 0.05 16 44 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.11 0.97 7.67 -51.93 -0.40 0.57 16 LS Contribution 386.41 15.07 5.82 5.82 Total: -1.00 -37.07 386.41 -9.07 -46.14 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -7.24 Total: -1.28 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -0.50 Total: -1.72 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: -0.10 Total: -41.52 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: 0.18 Total: -20.03 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.07 -9.07 -46.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071659706.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.425 kcal (2) G-P(sol) polarization free energy of solvation -37.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds