Wall clock time and date at job start Tue Mar 31 2020 14:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 110.63906 * 2 1 4 4 C 1.54339 * 110.99872 * 236.92904 * 2 1 3 5 5 N 1.47015 * 107.26094 * 219.60031 * 4 2 1 6 6 C 1.34780 * 125.64739 * 178.84648 * 5 4 2 7 7 O 1.21280 * 120.00423 * 179.68855 * 6 5 4 8 8 C 1.50701 * 119.99795 * 359.69531 * 6 5 4 9 9 S 1.81002 * 109.47156 * 179.97438 * 8 6 5 10 10 C 1.76193 * 100.00049 * 180.02562 * 9 8 6 11 11 H 1.08005 * 120.00026 * 359.97438 * 10 9 8 12 12 C 1.38806 * 120.00056 * 180.02562 * 10 9 8 13 13 N 1.31623 * 119.99640 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00053 * 179.97438 * 12 10 9 15 15 H 1.48508 * 109.47315 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47332 * 119.99854 * 14 12 10 17 17 H 1.48499 * 109.47328 * 240.00154 * 14 12 10 18 18 C 1.47427 * 108.70863 * 358.58502 * 5 4 2 19 19 C 1.54913 * 104.82914 * 24.35548 * 18 5 4 20 20 H 1.08998 * 111.00280 * 81.10686 * 19 18 5 21 21 N 1.46491 * 111.00349 * 204.91746 * 19 18 5 22 22 C 1.34776 * 120.00353 * 273.54695 * 21 19 18 23 23 O 1.21282 * 119.99801 * 0.02562 * 22 21 19 24 24 C 1.50696 * 120.00518 * 180.02562 * 22 21 19 25 25 C 1.53007 * 115.54839 * 34.32640 * 24 22 21 26 26 C 1.53002 * 117.49864 * 248.62454 * 24 22 21 27 27 C 1.53000 * 59.99985 * 252.50497 * 26 24 22 28 28 H 1.09004 * 109.46835 * 296.85082 * 1 2 3 29 29 H 1.08999 * 109.47322 * 56.85433 * 1 2 3 30 30 H 1.09001 * 109.47097 * 176.85937 * 1 2 3 31 31 H 1.08994 * 109.98983 * 100.12498 * 4 2 1 32 32 H 1.08996 * 109.77601 * 338.95506 * 4 2 1 33 33 H 1.09002 * 109.47060 * 299.99722 * 8 6 5 34 34 H 1.09001 * 109.47380 * 59.99809 * 8 6 5 35 35 H 0.97010 * 119.99946 * 180.02562 * 13 12 10 36 36 H 1.09000 * 110.36996 * 143.19200 * 18 5 4 37 37 H 1.08998 * 110.36260 * 265.41081 * 18 5 4 38 38 H 0.97004 * 120.00127 * 93.54793 * 21 19 18 39 39 H 1.08997 * 109.46965 * 85.58638 * 25 24 22 40 40 H 1.09000 * 109.46991 * 205.58265 * 25 24 22 41 41 H 1.08996 * 109.47113 * 325.58449 * 25 24 22 42 42 H 1.08994 * 117.49726 * 359.97438 * 26 24 22 43 43 H 1.09000 * 117.49876 * 145.01673 * 26 24 22 44 44 H 1.09005 * 117.49676 * 252.51348 * 27 26 24 45 45 H 1.08999 * 117.49707 * 107.48592 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0831 -0.7863 -1.2075 5 7 3.2494 -1.5469 -0.7356 6 6 4.0004 -2.3784 -1.4847 7 8 4.9473 -2.9522 -0.9897 8 6 3.6635 -2.5950 -2.9375 9 16 4.8472 -3.7552 -3.6648 10 6 4.2352 -3.8221 -5.3157 11 1 3.3690 -3.2404 -5.5945 12 6 4.8658 -4.6232 -6.2577 13 7 5.9211 -5.3325 -5.9178 14 14 4.2165 -4.6946 -8.0078 15 1 3.0287 -3.8118 -8.1315 16 1 5.2727 -4.2385 -8.9466 17 1 3.8314 -6.0906 -8.3363 18 6 3.4653 -1.2447 0.6912 19 6 2.0790 -0.7935 1.2150 20 1 1.4472 -1.6530 1.4389 21 7 2.2176 0.0725 2.3885 22 6 2.3115 -0.4696 3.6188 23 8 2.2817 -1.6744 3.7545 24 6 2.4535 0.4212 4.8260 25 6 1.7113 1.7571 4.7512 26 6 3.7907 0.3961 5.5691 27 6 2.5554 -0.2547 6.1948 28 1 -0.3633 0.4642 0.9169 29 1 -0.3634 0.5619 -0.8604 30 1 -0.3633 -1.0261 -0.0563 31 1 2.3848 -0.0959 -1.9951 32 1 1.3216 -1.4700 -1.5825 33 1 2.6563 -3.0036 -3.0200 34 1 3.7145 -1.6442 -3.4680 35 1 6.3620 -5.8921 -6.5762 36 1 3.7993 -2.1365 1.2215 37 1 4.1944 -0.4423 0.8028 38 1 2.2418 1.0362 2.2800 39 1 0.6814 1.6194 5.0805 40 1 2.2050 2.4836 5.3966 41 1 1.7188 2.1199 3.7235 42 1 4.5675 -0.2651 5.1851 43 1 4.1419 1.3314 6.0049 44 1 2.0940 0.2525 7.0421 45 1 2.5197 -1.3438 6.2221 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071659706.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:21 Heat of formation + Delta-G solvation = -75.670643 kcal Electronic energy + Delta-G solvation = -25173.778066 eV Core-core repulsion = 21509.991878 eV Total energy + Delta-G solvation = -3663.786189 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.69866 -40.82023 -39.00344 -37.56721 -35.54147 -34.60059 -33.51123 -31.70739 -29.90906 -28.82006 -27.68375 -27.32481 -25.23149 -23.44323 -23.17678 -21.85507 -20.92394 -20.33604 -19.63176 -18.26165 -18.01687 -17.77758 -16.90746 -16.81815 -16.65172 -16.10589 -15.84005 -15.63675 -15.35620 -14.89304 -14.75158 -14.51404 -14.36543 -14.24557 -13.89543 -13.60768 -13.49700 -13.37039 -13.25999 -13.14669 -13.04246 -12.91807 -12.60797 -12.43680 -12.36615 -12.18469 -11.75738 -11.73394 -11.52264 -11.17070 -11.08141 -10.99729 -10.86319 -10.31403 -10.29758 -9.78528 -8.70888 -8.35876 -6.15260 1.17875 1.37373 1.41467 1.42870 1.48396 1.55726 1.81281 2.20638 2.25812 2.81989 2.98457 3.13615 3.28895 3.43410 3.62261 3.72825 3.76343 3.86723 3.88891 3.99590 4.05740 4.16107 4.23934 4.39644 4.42371 4.60288 4.63627 4.69413 4.71353 4.79508 4.82025 4.88270 4.94527 4.95998 5.00161 5.11015 5.13996 5.20471 5.31486 5.35047 5.40825 5.44554 6.18868 6.28018 6.44556 7.02143 7.05112 7.15684 8.73825 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.027526 B = 0.002278 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.988289 B =12288.462077 C =13013.554470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.088 4.088 3 H 0.122 0.878 4 C 0.094 3.906 5 N -0.615 5.615 6 C 0.544 3.456 7 O -0.569 6.569 8 C -0.116 4.116 9 S -0.157 6.157 10 C -0.542 4.542 11 H 0.085 0.915 12 C 0.011 3.989 13 N -0.913 5.913 14 Si 1.002 2.998 15 H -0.254 1.254 16 H -0.273 1.273 17 H -0.275 1.275 18 C 0.096 3.904 19 C 0.147 3.853 20 H 0.084 0.916 21 N -0.696 5.696 22 C 0.543 3.457 23 O -0.585 6.585 24 C -0.171 4.171 25 C -0.109 4.109 26 C -0.143 4.143 27 C -0.152 4.152 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.050 0.950 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.113 0.887 35 H 0.271 0.729 36 H 0.043 0.957 37 H 0.078 0.922 38 H 0.421 0.579 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.135 0.865 44 H 0.129 0.871 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.123 22.961 19.844 33.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.107 4.107 3 H 0.140 0.860 4 C -0.028 4.028 5 N -0.350 5.350 6 C 0.333 3.667 7 O -0.448 6.448 8 C -0.267 4.267 9 S 0.070 5.930 10 C -0.690 4.690 11 H 0.104 0.896 12 C -0.194 4.194 13 N -0.549 5.549 14 Si 0.824 3.176 15 H -0.177 1.177 16 H -0.199 1.199 17 H -0.200 1.200 18 C -0.028 4.028 19 C 0.040 3.960 20 H 0.103 0.897 21 N -0.349 5.349 22 C 0.331 3.669 23 O -0.465 6.465 24 C -0.174 4.174 25 C -0.166 4.166 26 C -0.181 4.181 27 C -0.189 4.189 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.100 0.900 33 H 0.126 0.874 34 H 0.131 0.869 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.096 0.904 38 H 0.261 0.739 39 H 0.088 0.912 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.153 0.847 44 H 0.147 0.853 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.602 21.125 20.564 32.468 hybrid contribution -0.663 -0.007 -1.551 1.687 sum -14.264 21.118 19.013 31.795 Atomic orbital electron populations 1.21777 0.91355 1.02676 1.03869 1.22486 0.98112 1.00058 0.90090 0.85971 1.22527 0.86694 0.95298 0.98280 1.48280 1.31235 1.44782 1.10719 1.19928 0.81413 0.77661 0.87723 1.90697 1.30517 1.49501 1.74036 1.23278 1.04584 1.04805 0.94029 1.85684 1.40291 1.56971 1.10008 1.23215 1.17985 1.32729 0.95090 0.89647 1.26189 0.94779 0.93864 1.04547 1.70203 1.20577 1.27401 1.36728 0.84858 0.78590 0.78456 0.75735 1.17746 1.19866 1.20034 1.22581 0.99010 1.00336 0.80878 1.21950 0.93870 0.94509 0.85693 0.89742 1.45615 1.74050 1.10966 1.04293 1.20220 0.74106 0.87810 0.84787 1.90730 1.51513 1.17456 1.86795 1.21588 1.05041 0.99512 0.91258 1.21400 0.99965 0.91274 1.03918 1.23203 0.89607 1.04101 1.01155 1.23084 1.01498 1.00195 0.94140 0.90781 0.89841 0.93061 0.88708 0.90034 0.87374 0.86901 0.91990 0.93858 0.90391 0.73944 0.91196 0.89502 0.90472 0.90259 0.84724 0.85335 0.90210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.17 71.98 0.66 -0.50 16 2 C -0.09 -1.01 3.15 -9.60 -0.03 -1.04 16 3 H 0.12 0.73 8.00 -2.39 -0.02 0.71 16 4 C 0.09 1.70 6.10 86.74 0.53 2.23 16 5 N -0.62 -18.12 3.33 -811.78 -2.70 -20.82 16 6 C 0.54 22.28 7.87 87.66 0.69 22.96 16 7 O -0.57 -29.21 16.12 -3.03 -0.05 -29.26 16 8 C -0.12 -4.81 5.35 71.24 0.38 -4.43 16 9 S -0.16 -8.98 20.57 -56.49 -1.16 -10.14 16 10 C -0.54 -31.26 9.50 67.96 0.65 -30.62 16 11 H 0.09 4.53 7.80 -2.91 -0.02 4.51 16 12 C 0.01 0.62 5.49 84.86 0.47 1.08 16 13 N -0.91 -56.87 13.22 21.65 0.29 -56.58 16 14 Si 1.00 43.79 29.55 68.60 2.03 45.81 16 15 H -0.25 -10.25 7.11 99.48 0.71 -9.55 16 16 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 17 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 18 C 0.10 2.61 6.60 86.86 0.57 3.18 16 19 C 0.15 2.73 2.76 46.38 0.13 2.86 16 20 H 0.08 2.01 7.64 -2.39 -0.02 1.99 16 21 N -0.70 -9.89 5.13 -435.99 -2.24 -12.13 16 22 C 0.54 10.97 7.39 87.66 0.65 11.62 16 23 O -0.59 -18.26 16.00 -3.04 -0.05 -18.31 16 24 C -0.17 -2.19 2.61 -52.93 -0.14 -2.33 16 25 C -0.11 -0.53 9.79 71.98 0.70 0.17 16 26 C -0.14 -1.72 9.88 30.60 0.30 -1.41 16 27 C -0.15 -2.06 9.76 30.59 0.30 -1.76 16 28 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 29 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.05 0.58 8.08 -2.39 -0.02 0.56 16 31 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.08 1.43 7.78 -2.39 -0.02 1.41 16 33 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 34 H 0.11 4.13 8.14 -2.40 -0.02 4.11 16 35 H 0.27 15.61 8.31 -92.70 -0.77 14.84 16 36 H 0.04 1.53 8.04 -2.39 -0.02 1.51 16 37 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.42 2.74 6.81 -92.70 -0.63 2.11 16 39 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.09 0.16 7.90 -2.39 -0.02 0.14 16 41 H 0.08 0.14 6.38 -2.39 -0.02 0.12 16 42 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.13 0.81 8.05 -2.39 -0.02 0.79 16 44 H 0.13 1.04 8.14 -2.38 -0.02 1.02 16 45 H 0.08 1.56 7.67 -2.39 -0.02 1.54 16 Total: -1.00 -87.88 386.41 2.33 -85.55 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.35 Total: 13.85 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: 5.86 Total: 2.02 kcal Atomic # 7 Polarization: -84.88 SS G_CDS: -4.65 Total: -89.52 kcal Atomic # 8 Polarization: -47.47 SS G_CDS: -0.10 Total: -47.57 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -8.98 SS G_CDS: -1.16 Total: -10.14 kcal Total: -87.88 2.33 -85.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071659706.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.879 kcal (2) G-P(sol) polarization free energy of solvation -87.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds