Wall clock time and date at job start Tue Mar 31 2020 14:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 110.63693 * 2 1 4 4 C 1.54325 * 110.87117 * 236.74937 * 2 1 3 5 5 N 1.47018 * 107.26892 * 219.37437 * 4 2 1 6 6 C 1.34780 * 125.64877 * 178.89850 * 5 4 2 7 7 O 1.21279 * 120.00141 * 180.02562 * 6 5 4 8 8 C 1.50696 * 119.99817 * 0.02562 * 6 5 4 9 9 S 1.81005 * 109.47266 * 180.02562 * 8 6 5 10 10 C 1.76199 * 100.00135 * 180.02562 * 9 8 6 11 11 H 1.08001 * 119.99664 * 0.02562 * 10 9 8 12 12 C 1.38802 * 119.99796 * 180.02562 * 10 9 8 13 13 N 1.31627 * 119.99987 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99732 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47304 * 59.99838 * 14 12 10 16 16 H 1.48497 * 109.47079 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47113 * 299.99907 * 14 12 10 18 18 C 1.47423 * 108.70681 * 358.94202 * 5 4 2 19 19 C 1.54914 * 104.83031 * 24.12703 * 18 5 4 20 20 H 1.09002 * 111.00586 * 204.91807 * 19 18 5 21 21 N 1.46508 * 111.03460 * 81.07949 * 19 18 5 22 22 C 1.34773 * 119.99519 * 89.60718 * 21 19 18 23 23 O 1.21275 * 120.00435 * 359.97438 * 22 21 19 24 24 C 1.50707 * 119.99358 * 179.97438 * 22 21 19 25 25 C 1.52995 * 115.54943 * 34.41938 * 24 22 21 26 26 C 1.52997 * 117.49675 * 248.74438 * 24 22 21 27 27 C 1.52999 * 117.49633 * 180.08448 * 24 22 21 28 28 H 1.08997 * 109.47293 * 296.86537 * 1 2 3 29 29 H 1.09007 * 109.46505 * 56.86091 * 1 2 3 30 30 H 1.08998 * 109.47103 * 176.85344 * 1 2 3 31 31 H 1.08992 * 109.88412 * 338.79356 * 4 2 1 32 32 H 1.09004 * 109.87923 * 99.80404 * 4 2 1 33 33 H 1.08997 * 109.47499 * 300.00348 * 8 6 5 34 34 H 1.09002 * 109.46826 * 60.00631 * 8 6 5 35 35 H 0.97000 * 119.99646 * 180.02562 * 13 12 10 36 36 H 1.08998 * 110.36740 * 265.29591 * 18 5 4 37 37 H 1.08994 * 110.37022 * 142.96739 * 18 5 4 38 38 H 0.96995 * 119.99891 * 269.60506 * 21 19 18 39 39 H 1.09007 * 109.47533 * 85.58064 * 25 24 22 40 40 H 1.09004 * 109.46896 * 205.58188 * 25 24 22 41 41 H 1.08997 * 109.47444 * 325.58234 * 25 24 22 42 42 H 1.08997 * 117.50473 * 0.02562 * 26 24 22 43 43 H 1.09003 * 117.49786 * 145.02831 * 26 24 22 44 44 H 1.09003 * 117.50125 * 214.97986 * 27 24 22 45 45 H 1.09004 * 117.50109 * 0.02562 * 27 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0799 -0.7906 -1.2059 5 7 3.2494 -1.5471 -0.7353 6 6 3.9995 -2.3798 -1.4839 7 8 4.9457 -2.9544 -0.9884 8 6 3.6626 -2.5968 -2.9366 9 16 4.8442 -3.7598 -3.6628 10 6 4.2324 -3.8268 -5.3138 11 1 3.3678 -3.2429 -5.5933 12 6 4.8615 -4.6298 -6.2551 13 7 5.9149 -5.3416 -5.9141 14 14 4.2133 -4.7001 -8.0056 15 1 4.2581 -3.3423 -8.6050 16 1 5.0544 -5.6241 -8.8081 17 1 2.8116 -5.1905 -7.9950 18 6 3.4652 -1.2447 0.6914 19 6 2.0789 -0.7934 1.2152 20 1 2.1820 -0.1489 2.0882 21 7 1.2289 -1.9481 1.5157 22 6 1.2518 -2.4999 2.7451 23 8 1.9764 -2.0408 3.6024 24 6 0.3769 -3.6874 3.0544 25 6 0.1618 -4.6672 1.8993 26 6 -0.7856 -3.4743 4.0260 27 6 0.4468 -4.2670 4.4687 28 1 -0.3634 0.4644 0.9167 29 1 -0.3632 0.5619 -0.8606 30 1 -0.3633 -1.0261 -0.0564 31 1 1.3191 -1.4773 -1.5770 32 1 2.3750 -0.1017 -1.9974 33 1 2.6550 -3.0042 -3.0189 34 1 3.7148 -1.6463 -3.4676 35 1 6.3547 -5.9025 -6.5720 36 1 4.1929 -0.4409 0.8030 37 1 3.7992 -2.1364 1.2219 38 1 0.6496 -2.3155 0.8299 39 1 0.9812 -5.3856 1.8746 40 1 -0.7807 -5.1958 2.0420 41 1 0.1315 -4.1183 0.9581 42 1 -0.9180 -2.4752 4.4412 43 1 -1.7037 -4.0326 3.8425 44 1 0.3391 -5.3463 4.5762 45 1 1.1253 -3.7892 5.1755 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071659708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:25 Heat of formation + Delta-G solvation = -47.440262 kcal Electronic energy + Delta-G solvation = -25758.678124 eV Core-core repulsion = 22096.116097 eV Total energy + Delta-G solvation = -3662.562027 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.85770 -39.61900 -37.83766 -36.70402 -34.24350 -32.51331 -32.43795 -30.48071 -29.03020 -27.95960 -26.55276 -25.50422 -24.23846 -22.81284 -22.60966 -20.32346 -20.08723 -19.26962 -17.76667 -17.33892 -16.91009 -16.47341 -15.75821 -15.31767 -15.15160 -14.91324 -14.81784 -14.37809 -14.17553 -13.88571 -13.71427 -13.42747 -13.19369 -13.05277 -12.84407 -12.70804 -12.60804 -12.45696 -12.25199 -11.88159 -11.80122 -11.64226 -11.35685 -11.13193 -11.05879 -11.05501 -10.88962 -10.78708 -10.33644 -9.98477 -9.84712 -9.49937 -9.34916 -9.07539 -8.48897 -8.25217 -6.52111 -6.22912 -3.93963 2.25145 2.81114 2.88679 3.05472 3.21772 3.24157 3.27699 3.48306 3.58964 4.00604 4.18462 4.26155 4.29068 4.39488 4.47908 4.50208 4.63626 4.89181 5.00244 5.05037 5.11991 5.18943 5.25122 5.29281 5.31867 5.32550 5.41362 5.46691 5.49020 5.56774 5.57817 5.64017 5.66761 5.78588 5.81435 5.82457 5.84938 5.90871 6.10325 6.22086 6.38204 7.22899 7.57241 7.64205 7.98296 8.33257 8.54417 9.21975 10.84454 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016215 B = 0.002812 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.433873 B = 9956.399855 C =10397.814310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.110 4.110 3 H 0.101 0.899 4 C 0.103 3.897 5 N -0.625 5.625 6 C 0.548 3.452 7 O -0.513 6.513 8 C -0.146 4.146 9 S -0.060 6.060 10 C -0.536 4.536 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.097 3.903 19 C 0.135 3.865 20 H 0.110 0.890 21 N -0.712 5.712 22 C 0.554 3.446 23 O -0.539 6.539 24 C -0.168 4.168 25 C -0.115 4.115 26 C -0.150 4.150 27 C -0.143 4.143 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.269 0.731 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.402 0.598 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.098 0.902 43 H 0.104 0.896 44 H 0.103 0.897 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.475 9.405 16.259 25.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 H 0.120 0.880 4 C -0.021 4.021 5 N -0.363 5.363 6 C 0.336 3.664 7 O -0.387 6.387 8 C -0.296 4.296 9 S 0.167 5.833 10 C -0.684 4.684 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.502 5.502 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 C -0.027 4.027 19 C 0.029 3.971 20 H 0.128 0.872 21 N -0.364 5.364 22 C 0.340 3.660 23 O -0.415 6.415 24 C -0.171 4.171 25 C -0.173 4.173 26 C -0.187 4.187 27 C -0.181 4.181 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.239 0.761 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.116 0.884 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -15.332 8.687 17.478 24.820 hybrid contribution -1.736 0.484 -2.220 2.859 sum -17.068 9.171 15.258 24.662 Atomic orbital electron populations 1.21711 0.93267 1.02191 1.02645 1.22555 0.96966 0.99942 0.93470 0.88033 1.22102 0.88304 0.94971 0.96701 1.48488 1.30894 1.46263 1.10651 1.20031 0.81464 0.77215 0.87674 1.90722 1.27835 1.46956 1.73159 1.23503 1.06228 1.05968 0.93951 1.85438 1.36542 1.53242 1.08114 1.22811 1.17834 1.32377 0.95408 0.91011 1.24991 0.94700 0.94596 0.99261 1.70008 1.18948 1.26183 1.35097 0.86225 0.78809 0.78185 0.82285 1.19935 1.20795 1.19940 1.22593 0.96267 1.01859 0.81979 1.22125 0.89560 0.87342 0.98049 0.87168 1.45857 1.44635 1.32618 1.13309 1.19488 0.81717 0.83006 0.81763 1.90697 1.40924 1.62972 1.46933 1.21490 1.02961 0.98266 0.94360 1.21366 1.02740 0.97833 0.95320 1.23109 0.92433 1.02412 1.00752 1.23051 1.00290 1.00218 0.94512 0.91799 0.91614 0.92450 0.91260 0.90835 0.89437 0.89331 0.92101 0.90631 0.89947 0.76086 0.91173 0.91322 0.92036 0.88402 0.87771 0.87832 0.87407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.76 8.73 37.16 0.32 -0.44 16 2 C -0.11 -0.78 3.41 -88.78 -0.30 -1.09 16 3 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 4 C 0.10 1.01 6.08 -3.07 -0.02 0.99 16 5 N -0.63 -8.85 3.33 -170.53 -0.57 -9.42 16 6 C 0.55 10.62 7.87 -10.99 -0.09 10.53 16 7 O -0.51 -12.18 16.12 5.56 0.09 -12.09 16 8 C -0.15 -2.97 5.35 36.00 0.19 -2.78 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.54 -15.19 9.50 30.94 0.29 -14.89 16 11 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 12 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 13 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16 14 Si 0.92 21.23 29.55 -169.99 -5.02 16.21 16 15 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 18 C 0.10 1.25 6.60 -2.53 -0.02 1.23 16 19 C 0.14 1.27 3.12 -65.78 -0.21 1.07 16 20 H 0.11 1.05 7.63 -51.93 -0.40 0.65 16 21 N -0.71 -6.72 4.52 -51.72 -0.23 -6.95 16 22 C 0.55 6.29 7.39 -10.98 -0.08 6.21 16 23 O -0.54 -7.93 15.95 5.56 0.09 -7.85 16 24 C -0.17 -1.50 2.61 -155.66 -0.41 -1.91 16 25 C -0.12 -0.91 9.79 37.16 0.36 -0.54 16 26 C -0.15 -1.05 9.88 -26.69 -0.26 -1.31 16 27 C -0.14 -1.20 9.77 -26.69 -0.26 -1.46 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 30 H 0.06 0.30 6.43 -51.93 -0.33 -0.03 16 31 H 0.07 0.63 7.78 -51.93 -0.40 0.23 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 34 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 35 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.08 1.30 8.04 -51.93 -0.42 0.88 16 38 H 0.40 3.21 5.34 -40.82 -0.22 3.00 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.42 7.90 -51.93 -0.41 0.01 16 41 H 0.06 0.46 6.39 -51.93 -0.33 0.12 16 42 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.10 0.54 8.05 -51.93 -0.42 0.12 16 44 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.11 1.05 7.67 -51.93 -0.40 0.65 16 LS Contribution 382.92 15.07 5.77 5.77 Total: -1.00 -36.16 382.92 -9.02 -45.18 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -7.10 Total: 0.77 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -0.56 Total: -2.38 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: -0.07 Total: -41.77 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: 0.18 Total: -19.93 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.16 -9.02 -45.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071659708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.262 kcal (2) G-P(sol) polarization free energy of solvation -36.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds