Wall clock time and date at job start Tue Mar 31 2020 14:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 110.63693 * 2 1 4 4 C 1.54325 * 110.87117 * 236.74937 * 2 1 3 5 5 N 1.47018 * 107.26892 * 219.37437 * 4 2 1 6 6 C 1.34780 * 125.64877 * 178.89850 * 5 4 2 7 7 O 1.21279 * 120.00141 * 180.02562 * 6 5 4 8 8 C 1.50696 * 119.99817 * 0.02562 * 6 5 4 9 9 S 1.81005 * 109.47266 * 180.02562 * 8 6 5 10 10 C 1.76199 * 100.00135 * 180.02562 * 9 8 6 11 11 H 1.08001 * 119.99664 * 0.02562 * 10 9 8 12 12 C 1.38802 * 119.99796 * 180.02562 * 10 9 8 13 13 N 1.31627 * 119.99987 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99732 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47304 * 59.99838 * 14 12 10 16 16 H 1.48497 * 109.47079 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47113 * 299.99907 * 14 12 10 18 18 C 1.47423 * 108.70681 * 358.94202 * 5 4 2 19 19 C 1.54914 * 104.83031 * 24.12703 * 18 5 4 20 20 H 1.09002 * 111.00586 * 204.91807 * 19 18 5 21 21 N 1.46508 * 111.03460 * 81.07949 * 19 18 5 22 22 C 1.34773 * 119.99519 * 89.60718 * 21 19 18 23 23 O 1.21275 * 120.00435 * 359.97438 * 22 21 19 24 24 C 1.50707 * 119.99358 * 179.97438 * 22 21 19 25 25 C 1.52995 * 115.54943 * 34.41938 * 24 22 21 26 26 C 1.52997 * 117.49675 * 248.74438 * 24 22 21 27 27 C 1.52999 * 117.49633 * 180.08448 * 24 22 21 28 28 H 1.08997 * 109.47293 * 296.86537 * 1 2 3 29 29 H 1.09007 * 109.46505 * 56.86091 * 1 2 3 30 30 H 1.08998 * 109.47103 * 176.85344 * 1 2 3 31 31 H 1.08992 * 109.88412 * 338.79356 * 4 2 1 32 32 H 1.09004 * 109.87923 * 99.80404 * 4 2 1 33 33 H 1.08997 * 109.47499 * 300.00348 * 8 6 5 34 34 H 1.09002 * 109.46826 * 60.00631 * 8 6 5 35 35 H 0.97000 * 119.99646 * 180.02562 * 13 12 10 36 36 H 1.08998 * 110.36740 * 265.29591 * 18 5 4 37 37 H 1.08994 * 110.37022 * 142.96739 * 18 5 4 38 38 H 0.96995 * 119.99891 * 269.60506 * 21 19 18 39 39 H 1.09007 * 109.47533 * 85.58064 * 25 24 22 40 40 H 1.09004 * 109.46896 * 205.58188 * 25 24 22 41 41 H 1.08997 * 109.47444 * 325.58234 * 25 24 22 42 42 H 1.08997 * 117.50473 * 0.02562 * 26 24 22 43 43 H 1.09003 * 117.49786 * 145.02831 * 26 24 22 44 44 H 1.09003 * 117.50125 * 214.97986 * 27 24 22 45 45 H 1.09004 * 117.50109 * 0.02562 * 27 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0799 -0.7906 -1.2059 5 7 3.2494 -1.5471 -0.7353 6 6 3.9995 -2.3798 -1.4839 7 8 4.9457 -2.9544 -0.9884 8 6 3.6626 -2.5968 -2.9366 9 16 4.8442 -3.7598 -3.6628 10 6 4.2324 -3.8268 -5.3138 11 1 3.3678 -3.2429 -5.5933 12 6 4.8615 -4.6298 -6.2551 13 7 5.9149 -5.3416 -5.9141 14 14 4.2133 -4.7001 -8.0056 15 1 4.2581 -3.3423 -8.6050 16 1 5.0544 -5.6241 -8.8081 17 1 2.8116 -5.1905 -7.9950 18 6 3.4652 -1.2447 0.6914 19 6 2.0789 -0.7934 1.2152 20 1 2.1820 -0.1489 2.0882 21 7 1.2289 -1.9481 1.5157 22 6 1.2518 -2.4999 2.7451 23 8 1.9764 -2.0408 3.6024 24 6 0.3769 -3.6874 3.0544 25 6 0.1618 -4.6672 1.8993 26 6 -0.7856 -3.4743 4.0260 27 6 0.4468 -4.2670 4.4687 28 1 -0.3634 0.4644 0.9167 29 1 -0.3632 0.5619 -0.8606 30 1 -0.3633 -1.0261 -0.0564 31 1 1.3191 -1.4773 -1.5770 32 1 2.3750 -0.1017 -1.9974 33 1 2.6550 -3.0042 -3.0189 34 1 3.7148 -1.6463 -3.4676 35 1 6.3547 -5.9025 -6.5720 36 1 4.1929 -0.4409 0.8030 37 1 3.7992 -2.1364 1.2219 38 1 0.6496 -2.3155 0.8299 39 1 0.9812 -5.3856 1.8746 40 1 -0.7807 -5.1958 2.0420 41 1 0.1315 -4.1183 0.9581 42 1 -0.9180 -2.4752 4.4412 43 1 -1.7037 -4.0326 3.8425 44 1 0.3391 -5.3463 4.5762 45 1 1.1253 -3.7892 5.1755 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071659708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:24 Heat of formation + Delta-G solvation = -71.948968 kcal Electronic energy + Delta-G solvation = -25759.740901 eV Core-core repulsion = 22096.116097 eV Total energy + Delta-G solvation = -3663.624805 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.78801 -40.72567 -39.02405 -37.52963 -35.30291 -34.58940 -33.33729 -31.74924 -29.91538 -29.00241 -27.66866 -27.30115 -25.15285 -23.55376 -23.39854 -21.08077 -21.01572 -20.55117 -19.59593 -18.22063 -17.91237 -17.83210 -16.92782 -16.88186 -16.45068 -16.08472 -15.85083 -15.75548 -15.33310 -14.99575 -14.60376 -14.51182 -14.32144 -14.01045 -13.82771 -13.62115 -13.51107 -13.46378 -13.26371 -13.17370 -13.06759 -12.86041 -12.62658 -12.43682 -12.35091 -11.98602 -11.81008 -11.73589 -11.54845 -11.12879 -11.02618 -11.00188 -10.84335 -10.34289 -10.28698 -9.67448 -8.69408 -8.34598 -6.13982 1.22367 1.40250 1.44469 1.44807 1.52756 1.54969 2.03402 2.05146 2.27194 2.80751 2.99596 3.17842 3.31025 3.44668 3.61424 3.70494 3.80502 3.87085 3.88661 4.00932 4.15502 4.24892 4.29363 4.42361 4.48904 4.55468 4.66237 4.67444 4.68278 4.76128 4.77814 4.80556 4.87031 4.96048 5.05636 5.13621 5.20137 5.21520 5.24690 5.39210 5.41035 5.43755 6.19268 6.33487 6.43366 7.06132 7.07389 7.14186 8.74492 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016215 B = 0.002812 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.433873 B = 9956.399855 C =10397.814310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.091 4.091 3 H 0.122 0.878 4 C 0.090 3.910 5 N -0.612 5.612 6 C 0.544 3.456 7 O -0.571 6.571 8 C -0.116 4.116 9 S -0.155 6.155 10 C -0.545 4.545 11 H 0.085 0.915 12 C 0.013 3.987 13 N -0.913 5.913 14 Si 1.000 3.000 15 H -0.261 1.261 16 H -0.280 1.280 17 H -0.260 1.260 18 C 0.093 3.907 19 C 0.141 3.859 20 H 0.114 0.886 21 N -0.702 5.702 22 C 0.546 3.454 23 O -0.581 6.581 24 C -0.181 4.181 25 C -0.112 4.112 26 C -0.125 4.125 27 C -0.155 4.155 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.271 0.729 36 H 0.084 0.916 37 H 0.045 0.955 38 H 0.411 0.589 39 H 0.051 0.949 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.096 0.904 43 H 0.132 0.868 44 H 0.118 0.882 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.275 11.055 15.118 28.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 H 0.140 0.860 4 C -0.032 4.032 5 N -0.347 5.347 6 C 0.333 3.667 7 O -0.449 6.449 8 C -0.267 4.267 9 S 0.072 5.928 10 C -0.692 4.692 11 H 0.103 0.897 12 C -0.192 4.192 13 N -0.549 5.549 14 Si 0.821 3.179 15 H -0.186 1.186 16 H -0.206 1.206 17 H -0.184 1.184 18 C -0.031 4.031 19 C 0.035 3.965 20 H 0.132 0.868 21 N -0.355 5.355 22 C 0.334 3.666 23 O -0.461 6.461 24 C -0.184 4.184 25 C -0.169 4.169 26 C -0.162 4.162 27 C -0.193 4.193 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.080 0.920 36 H 0.102 0.898 37 H 0.064 0.936 38 H 0.250 0.750 39 H 0.070 0.930 40 H 0.110 0.890 41 H 0.083 0.917 42 H 0.114 0.886 43 H 0.150 0.850 44 H 0.137 0.863 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -19.205 10.383 16.335 27.267 hybrid contribution -0.575 0.052 -1.733 1.826 sum -19.780 10.435 14.603 26.709 Atomic orbital electron populations 1.21721 0.91296 1.02780 1.03715 1.22552 0.98329 0.99898 0.90229 0.85992 1.22540 0.86840 0.95408 0.98365 1.48379 1.30892 1.44556 1.10847 1.19869 0.81450 0.77802 0.87599 1.90701 1.30552 1.49676 1.73999 1.23281 1.04617 1.04587 0.94242 1.85687 1.40655 1.56602 1.09878 1.23153 1.18164 1.32629 0.95283 0.89687 1.26160 0.94738 0.93859 1.04447 1.70188 1.20645 1.27221 1.36853 0.84984 0.78509 0.78704 0.75677 1.18575 1.20568 1.18412 1.22721 0.98933 1.00524 0.80896 1.22108 0.87728 0.87476 0.99179 0.86794 1.45828 1.44192 1.32407 1.13034 1.20006 0.81426 0.83383 0.81755 1.90674 1.42732 1.64391 1.48255 1.21533 1.04063 0.97778 0.95057 1.21368 1.03225 0.97338 0.95017 1.23209 0.92457 1.02312 0.98189 1.23092 1.01230 1.01196 0.93763 0.91162 0.90078 0.92198 0.89795 0.89384 0.87237 0.87335 0.92006 0.89831 0.93629 0.75005 0.92995 0.88962 0.91671 0.88568 0.85033 0.86330 0.89517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 8.73 71.98 0.63 -0.29 16 2 C -0.09 -0.98 3.41 -9.60 -0.03 -1.02 16 3 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 4 C 0.09 1.48 6.08 86.73 0.53 2.01 16 5 N -0.61 -16.78 3.33 -811.82 -2.70 -19.48 16 6 C 0.54 21.31 7.87 87.66 0.69 22.00 16 7 O -0.57 -28.44 16.12 -3.02 -0.05 -28.49 16 8 C -0.12 -4.65 5.35 71.23 0.38 -4.27 16 9 S -0.16 -8.72 20.57 -56.49 -1.16 -9.88 16 10 C -0.54 -30.84 9.50 67.96 0.65 -30.20 16 11 H 0.09 4.41 7.80 -2.91 -0.02 4.39 16 12 C 0.01 0.71 5.49 84.86 0.47 1.18 16 13 N -0.91 -56.21 13.22 21.65 0.29 -55.93 16 14 Si 1.00 43.01 29.55 68.60 2.03 45.03 16 15 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 16 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 17 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 18 C 0.09 2.40 6.60 86.86 0.57 2.97 16 19 C 0.14 2.46 3.12 46.38 0.14 2.60 16 20 H 0.11 2.01 7.63 -2.39 -0.02 1.99 16 21 N -0.70 -12.42 4.52 -435.94 -1.97 -14.39 16 22 C 0.55 12.32 7.39 87.66 0.65 12.97 16 23 O -0.58 -17.65 15.95 -3.01 -0.05 -17.70 16 24 C -0.18 -3.07 2.61 -52.93 -0.14 -3.21 16 25 C -0.11 -1.61 9.79 71.98 0.70 -0.90 16 26 C -0.12 -1.48 9.88 30.62 0.30 -1.18 16 27 C -0.16 -2.53 9.77 30.62 0.30 -2.23 16 28 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.08 0.37 8.14 -2.38 -0.02 0.35 16 30 H 0.06 0.39 6.43 -2.39 -0.02 0.37 16 31 H 0.08 1.20 7.78 -2.39 -0.02 1.19 16 32 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 34 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 35 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 36 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.05 1.53 8.04 -2.39 -0.02 1.51 16 38 H 0.41 5.71 5.34 -92.71 -0.49 5.21 16 39 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 40 H 0.09 0.87 7.90 -2.38 -0.02 0.85 16 41 H 0.06 0.85 6.39 -2.39 -0.02 0.84 16 42 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.13 0.87 8.05 -2.39 -0.02 0.85 16 44 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.09 1.78 7.67 -2.38 -0.02 1.76 16 Total: -1.00 -83.90 382.92 2.72 -81.18 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.50 Total: 19.20 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: 5.84 Total: 0.44 kcal Atomic # 7 Polarization: -85.41 SS G_CDS: -4.39 Total: -89.79 kcal Atomic # 8 Polarization: -46.09 SS G_CDS: -0.10 Total: -46.19 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.16 Total: -9.88 kcal Total: -83.90 2.72 -81.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071659708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.232 kcal (2) G-P(sol) polarization free energy of solvation -83.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds