Wall clock time and date at job start Tue Mar 31 2020 14:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.91899 * 2 1 4 4 C 1.55131 * 111.16118 * 236.07503 * 2 1 3 5 5 N 1.47428 * 104.94237 * 205.12759 * 4 2 1 6 6 C 1.34770 * 125.65102 * 204.03868 * 5 4 2 7 7 O 1.21276 * 120.00021 * 354.79662 * 6 5 4 8 8 C 1.50707 * 120.00219 * 174.79833 * 6 5 4 9 9 C 1.52996 * 115.54591 * 293.50487 * 8 6 5 10 10 C 1.52996 * 117.50159 * 147.83440 * 8 6 5 11 11 C 1.52996 * 117.49890 * 79.17238 * 8 6 5 12 12 C 1.47027 * 108.70044 * 24.00535 * 5 4 2 13 13 C 1.54322 * 107.27397 * 358.93899 * 12 5 4 14 14 H 1.08999 * 110.72222 * 96.34186 * 13 12 5 15 15 N 1.46499 * 110.72203 * 219.44261 * 13 12 5 16 16 C 1.34777 * 119.99805 * 271.15888 * 15 13 12 17 17 O 1.21270 * 120.00394 * 359.97438 * 16 15 13 18 18 C 1.50704 * 119.99649 * 179.97438 * 16 15 13 19 19 S 1.80992 * 109.47028 * 179.97438 * 18 16 15 20 20 C 1.76206 * 100.00076 * 180.02562 * 19 18 16 21 21 H 1.07992 * 119.99648 * 359.97438 * 20 19 18 22 22 C 1.38800 * 119.99829 * 179.72535 * 20 19 18 23 23 N 1.31630 * 120.00127 * 0.27425 * 22 20 19 24 24 Si 1.86800 * 119.99687 * 180.26996 * 22 20 19 25 25 H 1.48501 * 109.47023 * 60.00300 * 24 22 20 26 26 H 1.48505 * 109.47124 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47311 * 300.00516 * 24 22 20 28 28 H 1.08994 * 109.46740 * 296.09516 * 1 2 3 29 29 H 1.09002 * 109.46981 * 56.09456 * 1 2 3 30 30 H 1.08998 * 109.47026 * 176.09521 * 1 2 3 31 31 H 1.09006 * 110.41825 * 86.20720 * 4 2 1 32 32 H 1.08994 * 110.30473 * 323.99629 * 4 2 1 33 33 H 1.08999 * 109.47734 * 65.56955 * 9 8 6 34 34 H 1.08999 * 109.47266 * 185.56950 * 9 8 6 35 35 H 1.08999 * 109.47661 * 305.56755 * 9 8 6 36 36 H 1.09002 * 117.49529 * 0.02562 * 10 8 6 37 37 H 1.08996 * 117.50217 * 145.01935 * 10 8 6 38 38 H 1.09003 * 117.49769 * 214.98431 * 11 8 6 39 39 H 1.08998 * 117.50081 * 359.97438 * 11 8 6 40 40 H 1.09000 * 109.88074 * 239.51529 * 12 5 4 41 41 H 1.09007 * 110.01141 * 118.43006 * 12 5 4 42 42 H 0.96998 * 120.00067 * 91.15300 * 15 13 12 43 43 H 1.09000 * 109.47041 * 59.99648 * 18 16 15 44 44 H 1.09004 * 109.46930 * 300.00044 * 18 16 15 45 45 H 0.96994 * 119.99651 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0900 -0.8074 -1.2004 5 7 3.4299 -1.2473 -0.7707 6 6 4.4516 -1.5676 -1.5892 7 8 4.2807 -1.5964 -2.7896 8 6 5.8063 -1.8898 -1.0130 9 6 6.5259 -0.7261 -0.3283 10 6 6.6666 -2.9115 -1.7592 11 6 6.0107 -3.2889 -0.4286 12 6 3.4672 -1.2781 0.6988 13 6 2.0862 -0.8080 1.2021 14 1 1.4451 -1.6615 1.4227 15 7 2.2287 0.0494 2.3815 16 6 2.2499 -0.4971 3.6133 17 8 2.1506 -1.6985 3.7455 18 6 2.3971 0.3849 4.8264 19 16 2.3901 -0.6374 6.3199 20 6 2.5702 0.6135 7.5478 21 1 2.6463 1.6502 7.2553 22 6 2.6090 0.2667 8.8912 23 7 2.5167 -0.9970 9.2477 24 14 2.7924 1.5935 10.1933 25 1 1.6517 2.5398 10.0998 26 1 2.8062 0.9672 11.5398 27 1 4.0642 2.3284 9.9755 28 1 -0.3632 0.4520 0.9229 29 1 -0.3633 0.5733 -0.8529 30 1 -0.3633 -1.0253 -0.0700 31 1 2.1643 -0.1731 -2.0838 32 1 1.4554 -1.6695 -1.4054 33 1 5.9680 -0.4251 0.5585 34 1 7.5286 -1.0394 -0.0377 35 1 6.5937 0.1154 -1.0178 36 1 6.2529 -3.3503 -2.6672 37 1 7.7452 -2.7549 -1.7620 38 1 6.6582 -3.3804 0.4435 39 1 5.1653 -3.9762 -0.4604 40 1 4.2435 -0.6058 1.0640 41 1 3.6626 -2.2928 1.0458 42 1 2.3078 1.0103 2.2758 43 1 1.5671 1.0904 4.8655 44 1 3.3373 0.9330 4.7652 45 1 2.5442 -1.2393 10.1865 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072249757.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:52 Heat of formation + Delta-G solvation = -50.332721 kcal Electronic energy + Delta-G solvation = -25479.435519 eV Core-core repulsion = 21816.748066 eV Total energy + Delta-G solvation = -3662.687454 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.82450 -39.50414 -38.02287 -36.78103 -34.20723 -32.80543 -32.47016 -30.05594 -29.11837 -27.99359 -27.06603 -25.52813 -23.95458 -22.71713 -22.19532 -20.97233 -20.25154 -19.02350 -17.88387 -17.21170 -16.77115 -16.30666 -16.22773 -15.57214 -15.08067 -14.88640 -14.83584 -14.40115 -14.06157 -13.88494 -13.73012 -13.43992 -13.21853 -13.20205 -12.81012 -12.69461 -12.59823 -12.52233 -12.23568 -12.11624 -11.82976 -11.52153 -11.49678 -11.09729 -11.07252 -11.02942 -10.82923 -10.79551 -10.33105 -9.97742 -9.87145 -9.53081 -9.13413 -9.07762 -8.90452 -8.30051 -6.55324 -6.25871 -3.97021 2.30990 2.52962 2.93830 2.97126 3.20389 3.24379 3.27063 3.41072 3.60021 3.95424 4.16328 4.27249 4.29226 4.41247 4.53083 4.54239 4.68130 4.83674 4.97627 5.05528 5.09347 5.10408 5.24715 5.33445 5.34949 5.37177 5.45482 5.48326 5.50592 5.53685 5.57315 5.62688 5.67902 5.79826 5.80148 5.82515 5.83204 5.90047 6.05106 6.06908 6.46843 7.19675 7.54331 7.56157 7.89428 8.30673 8.47280 9.19523 10.81460 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016788 B = 0.002645 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.479630 B =10584.756652 C =11593.715267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 H 0.091 0.909 4 C 0.112 3.888 5 N -0.612 5.612 6 C 0.569 3.431 7 O -0.540 6.540 8 C -0.160 4.160 9 C -0.111 4.111 10 C -0.144 4.144 11 C -0.158 4.158 12 C 0.087 3.913 13 C 0.142 3.858 14 H 0.108 0.892 15 N -0.729 5.729 16 C 0.534 3.466 17 O -0.513 6.513 18 C -0.154 4.154 19 S -0.058 6.058 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.401 0.599 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.836 2.295 -21.179 21.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.109 0.891 4 C -0.011 4.011 5 N -0.346 5.346 6 C 0.357 3.643 7 O -0.416 6.416 8 C -0.163 4.163 9 C -0.168 4.168 10 C -0.182 4.182 11 C -0.195 4.195 12 C -0.037 4.037 13 C 0.035 3.965 14 H 0.125 0.875 15 N -0.383 5.383 16 C 0.320 3.680 17 O -0.386 6.386 18 C -0.305 4.305 19 S 0.168 5.832 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.116 0.884 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.235 0.765 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.633 0.103 -21.481 21.642 hybrid contribution 0.287 2.742 0.761 2.860 sum 2.920 2.845 -20.720 21.117 Atomic orbital electron populations 1.21701 0.92767 1.02762 1.02666 1.22697 0.97157 0.99597 0.93581 0.89103 1.22335 0.82947 0.98448 0.97356 1.48316 1.12156 1.67027 1.07122 1.19222 0.83787 0.75823 0.85429 1.90693 1.83663 1.52546 1.14734 1.21382 0.94794 0.93734 1.06428 1.21315 0.99831 0.95687 0.99976 1.23046 0.98793 1.00053 0.96288 1.23131 1.03518 0.94862 0.97993 1.22642 0.98922 1.02954 0.79195 1.21921 0.95054 0.94763 0.84757 0.87457 1.45968 1.77117 1.10283 1.04974 1.20384 0.74934 0.89048 0.83597 1.90712 1.47035 1.15073 1.85795 1.23538 1.04909 1.03256 0.98778 1.85401 1.95793 1.10048 0.91944 1.22819 1.58476 0.94379 0.92856 0.90965 1.24988 0.94521 0.96155 0.97857 1.70000 1.46535 1.15986 1.17731 0.86229 0.78857 0.80779 0.79670 1.19935 1.20795 1.19921 0.91467 0.91965 0.91940 0.90045 0.90893 0.91395 0.91167 0.91841 0.87974 0.87808 0.87466 0.88384 0.90406 0.90234 0.76483 0.89130 0.89146 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.32 37.16 0.35 -0.63 16 2 C -0.11 -0.84 3.27 -88.35 -0.29 -1.13 16 3 H 0.09 0.61 8.00 -51.93 -0.42 0.20 16 4 C 0.11 1.00 6.37 -2.41 -0.02 0.99 16 5 N -0.61 -6.45 3.33 -170.37 -0.57 -7.02 16 6 C 0.57 6.94 7.09 -10.99 -0.08 6.86 16 7 O -0.54 -8.30 17.02 5.56 0.09 -8.21 16 8 C -0.16 -1.58 1.78 -155.66 -0.28 -1.86 16 9 C -0.11 -0.93 9.59 37.16 0.36 -0.57 16 10 C -0.14 -1.27 9.75 -26.70 -0.26 -1.53 16 11 C -0.16 -1.39 9.96 -26.70 -0.27 -1.65 16 12 C 0.09 0.90 6.12 -3.06 -0.02 0.88 16 13 C 0.14 1.44 2.74 -66.10 -0.18 1.26 16 14 H 0.11 1.28 7.52 -51.93 -0.39 0.89 16 15 N -0.73 -8.20 5.12 -52.03 -0.27 -8.46 16 16 C 0.53 8.86 7.85 -10.98 -0.09 8.78 16 17 O -0.51 -10.56 15.55 5.57 0.09 -10.47 16 18 C -0.15 -2.86 6.16 36.01 0.22 -2.64 16 19 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 20 C -0.54 -14.82 9.50 30.94 0.29 -14.53 16 21 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 22 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 23 N -0.87 -25.59 13.22 55.49 0.73 -24.85 16 24 Si 0.92 20.89 29.55 -169.99 -5.02 15.87 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 31 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 32 H 0.07 0.64 7.99 -51.93 -0.41 0.23 16 33 H 0.07 0.57 5.92 -51.93 -0.31 0.26 16 34 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.10 0.99 8.01 -51.93 -0.42 0.58 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.08 0.78 5.88 -51.93 -0.31 0.48 16 41 H 0.08 0.91 8.14 -51.92 -0.42 0.48 16 42 H 0.40 3.40 8.54 -40.82 -0.35 3.05 16 43 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 44 H 0.09 1.54 8.14 -51.91 -0.42 1.12 16 45 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 386.18 15.07 5.82 5.82 Total: -1.00 -34.58 386.18 -8.89 -43.47 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -7.21 Total: 1.40 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -0.35 Total: -3.81 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: -0.10 Total: -40.33 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: 0.18 Total: -18.68 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.58 -8.89 -43.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072249757.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.867 kcal (2) G-P(sol) polarization free energy of solvation -34.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds