Wall clock time and date at job start Tue Mar 31 2020 14:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.91899 * 2 1 4 4 C 1.55131 * 111.16118 * 236.07503 * 2 1 3 5 5 N 1.47428 * 104.94237 * 205.12759 * 4 2 1 6 6 C 1.34770 * 125.65102 * 204.03868 * 5 4 2 7 7 O 1.21276 * 120.00021 * 354.79662 * 6 5 4 8 8 C 1.50707 * 120.00219 * 174.79833 * 6 5 4 9 9 C 1.52996 * 115.54591 * 293.50487 * 8 6 5 10 10 C 1.52996 * 117.50159 * 147.83440 * 8 6 5 11 11 C 1.52996 * 117.49890 * 79.17238 * 8 6 5 12 12 C 1.47027 * 108.70044 * 24.00535 * 5 4 2 13 13 C 1.54322 * 107.27397 * 358.93899 * 12 5 4 14 14 H 1.08999 * 110.72222 * 96.34186 * 13 12 5 15 15 N 1.46499 * 110.72203 * 219.44261 * 13 12 5 16 16 C 1.34777 * 119.99805 * 271.15888 * 15 13 12 17 17 O 1.21270 * 120.00394 * 359.97438 * 16 15 13 18 18 C 1.50704 * 119.99649 * 179.97438 * 16 15 13 19 19 S 1.80992 * 109.47028 * 179.97438 * 18 16 15 20 20 C 1.76206 * 100.00076 * 180.02562 * 19 18 16 21 21 H 1.07992 * 119.99648 * 359.97438 * 20 19 18 22 22 C 1.38800 * 119.99829 * 179.72535 * 20 19 18 23 23 N 1.31630 * 120.00127 * 0.27425 * 22 20 19 24 24 Si 1.86800 * 119.99687 * 180.26996 * 22 20 19 25 25 H 1.48501 * 109.47023 * 60.00300 * 24 22 20 26 26 H 1.48505 * 109.47124 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47311 * 300.00516 * 24 22 20 28 28 H 1.08994 * 109.46740 * 296.09516 * 1 2 3 29 29 H 1.09002 * 109.46981 * 56.09456 * 1 2 3 30 30 H 1.08998 * 109.47026 * 176.09521 * 1 2 3 31 31 H 1.09006 * 110.41825 * 86.20720 * 4 2 1 32 32 H 1.08994 * 110.30473 * 323.99629 * 4 2 1 33 33 H 1.08999 * 109.47734 * 65.56955 * 9 8 6 34 34 H 1.08999 * 109.47266 * 185.56950 * 9 8 6 35 35 H 1.08999 * 109.47661 * 305.56755 * 9 8 6 36 36 H 1.09002 * 117.49529 * 0.02562 * 10 8 6 37 37 H 1.08996 * 117.50217 * 145.01935 * 10 8 6 38 38 H 1.09003 * 117.49769 * 214.98431 * 11 8 6 39 39 H 1.08998 * 117.50081 * 359.97438 * 11 8 6 40 40 H 1.09000 * 109.88074 * 239.51529 * 12 5 4 41 41 H 1.09007 * 110.01141 * 118.43006 * 12 5 4 42 42 H 0.96998 * 120.00067 * 91.15300 * 15 13 12 43 43 H 1.09000 * 109.47041 * 59.99648 * 18 16 15 44 44 H 1.09004 * 109.46930 * 300.00044 * 18 16 15 45 45 H 0.96994 * 119.99651 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0182 0.0000 4 6 2.0900 -0.8074 -1.2004 5 7 3.4299 -1.2473 -0.7707 6 6 4.4516 -1.5676 -1.5892 7 8 4.2807 -1.5964 -2.7896 8 6 5.8063 -1.8898 -1.0130 9 6 6.5259 -0.7261 -0.3283 10 6 6.6666 -2.9115 -1.7592 11 6 6.0107 -3.2889 -0.4286 12 6 3.4672 -1.2781 0.6988 13 6 2.0862 -0.8080 1.2021 14 1 1.4451 -1.6615 1.4227 15 7 2.2287 0.0494 2.3815 16 6 2.2499 -0.4971 3.6133 17 8 2.1506 -1.6985 3.7455 18 6 2.3971 0.3849 4.8264 19 16 2.3901 -0.6374 6.3199 20 6 2.5702 0.6135 7.5478 21 1 2.6463 1.6502 7.2553 22 6 2.6090 0.2667 8.8912 23 7 2.5167 -0.9970 9.2477 24 14 2.7924 1.5935 10.1933 25 1 1.6517 2.5398 10.0998 26 1 2.8062 0.9672 11.5398 27 1 4.0642 2.3284 9.9755 28 1 -0.3632 0.4520 0.9229 29 1 -0.3633 0.5733 -0.8529 30 1 -0.3633 -1.0253 -0.0700 31 1 2.1643 -0.1731 -2.0838 32 1 1.4554 -1.6695 -1.4054 33 1 5.9680 -0.4251 0.5585 34 1 7.5286 -1.0394 -0.0377 35 1 6.5937 0.1154 -1.0178 36 1 6.2529 -3.3503 -2.6672 37 1 7.7452 -2.7549 -1.7620 38 1 6.6582 -3.3804 0.4435 39 1 5.1653 -3.9762 -0.4604 40 1 4.2435 -0.6058 1.0640 41 1 3.6626 -2.2928 1.0458 42 1 2.3078 1.0103 2.2758 43 1 1.5671 1.0904 4.8655 44 1 3.3373 0.9330 4.7652 45 1 2.5442 -1.2393 10.1865 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072249757.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:51 Heat of formation + Delta-G solvation = -73.332649 kcal Electronic energy + Delta-G solvation = -25480.432871 eV Core-core repulsion = 21816.748066 eV Total energy + Delta-G solvation = -3663.684805 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.73245 -40.64754 -39.01833 -37.66033 -35.31202 -34.55683 -33.64660 -31.32130 -29.79067 -29.12195 -27.78559 -27.61331 -24.82311 -23.41579 -23.08900 -21.85406 -21.38323 -19.86045 -19.76788 -18.12005 -17.88736 -17.41484 -17.24179 -16.85201 -16.49271 -16.34259 -16.06996 -15.52767 -15.16021 -14.74900 -14.69009 -14.58125 -14.42291 -14.15603 -13.90070 -13.61265 -13.47540 -13.39251 -13.27948 -13.14240 -13.00278 -12.85106 -12.62286 -12.51899 -12.33625 -12.19579 -11.80370 -11.68796 -11.56609 -11.10549 -11.07335 -10.95820 -10.85060 -10.23868 -10.19417 -9.81372 -8.62640 -8.32284 -6.09315 1.27968 1.38572 1.45296 1.47723 1.55899 1.60311 1.76152 2.26952 2.31756 2.67968 3.02089 3.14555 3.35555 3.44977 3.52471 3.66835 3.81685 3.84912 3.94031 3.98852 4.08857 4.19878 4.35565 4.42022 4.53580 4.56946 4.62312 4.65382 4.70134 4.74080 4.79404 4.79776 4.87706 4.91422 4.96273 5.08068 5.11598 5.13228 5.24071 5.35662 5.44542 5.45879 6.22129 6.29813 6.49338 6.96867 7.09580 7.24377 8.76403 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016788 B = 0.002645 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.479630 B =10584.756652 C =11593.715267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.092 4.092 3 H 0.111 0.889 4 C 0.107 3.893 5 N -0.609 5.609 6 C 0.563 3.437 7 O -0.578 6.578 8 C -0.172 4.172 9 C -0.107 4.107 10 C -0.141 4.141 11 C -0.153 4.153 12 C 0.093 3.907 13 C 0.141 3.859 14 H 0.090 0.910 15 N -0.700 5.700 16 C 0.540 3.460 17 O -0.558 6.558 18 C -0.131 4.131 19 S -0.149 6.149 20 C -0.546 4.546 21 H 0.083 0.917 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.995 3.005 25 H -0.263 1.263 26 H -0.281 1.281 27 H -0.262 1.262 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.066 0.934 42 H 0.419 0.581 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.299 4.843 -21.628 22.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.111 4.111 3 H 0.129 0.871 4 C -0.015 4.015 5 N -0.342 5.342 6 C 0.353 3.647 7 O -0.458 6.458 8 C -0.175 4.175 9 C -0.164 4.164 10 C -0.178 4.178 11 C -0.190 4.190 12 C -0.031 4.031 13 C 0.035 3.965 14 H 0.108 0.892 15 N -0.355 5.355 16 C 0.326 3.674 17 O -0.436 6.436 18 C -0.282 4.282 19 S 0.078 5.922 20 C -0.694 4.694 21 H 0.101 0.899 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.817 3.183 25 H -0.187 1.187 26 H -0.206 1.206 27 H -0.186 1.186 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.085 0.915 42 H 0.258 0.742 43 H 0.129 0.871 44 H 0.130 0.870 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.086 2.699 -21.960 22.339 hybrid contribution 0.111 1.935 0.750 2.078 sum 3.197 4.634 -21.209 21.944 Atomic orbital electron populations 1.21706 0.91894 1.02844 1.03306 1.22640 0.97669 0.99790 0.91028 0.87116 1.22475 0.82277 0.98768 0.98028 1.48352 1.12491 1.66226 1.07086 1.19663 0.84791 0.75212 0.85075 1.90667 1.84424 1.54413 1.16299 1.21482 0.94032 0.94754 1.07272 1.21314 1.00412 0.95000 0.99641 1.23111 0.99795 0.99263 0.95662 1.23162 1.03395 0.93908 0.98579 1.22543 0.99110 1.02470 0.79018 1.21952 0.94999 0.94679 0.84901 0.89191 1.45614 1.74977 1.11361 1.03511 1.20045 0.74809 0.88019 0.84536 1.90711 1.49516 1.16847 1.86485 1.23379 1.06880 1.02310 0.95621 1.85573 1.96110 1.13829 0.96658 1.23179 1.58001 0.94781 0.93412 0.89865 1.26085 0.93955 0.98565 1.00468 1.70169 1.47946 1.18454 1.18198 0.85051 0.79458 0.77591 0.76204 1.18732 1.20628 1.18641 0.91684 0.90244 0.92423 0.89810 0.90887 0.91481 0.89598 0.91904 0.89310 0.85692 0.86089 0.89306 0.89545 0.91550 0.74250 0.87111 0.86994 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.32 71.98 0.67 -0.93 16 2 C -0.09 -1.18 3.27 -9.32 -0.03 -1.21 16 3 H 0.11 1.06 8.00 -2.39 -0.02 1.04 16 4 C 0.11 1.77 6.37 86.93 0.55 2.33 16 5 N -0.61 -12.31 3.33 -811.33 -2.70 -15.01 16 6 C 0.56 13.53 7.09 87.66 0.62 14.15 16 7 O -0.58 -17.91 17.02 -3.02 -0.05 -17.96 16 8 C -0.17 -3.25 1.78 -52.93 -0.09 -3.34 16 9 C -0.11 -1.59 9.59 71.98 0.69 -0.90 16 10 C -0.14 -2.37 9.75 30.62 0.30 -2.07 16 11 C -0.15 -2.58 9.96 30.62 0.30 -2.27 16 12 C 0.09 1.81 6.12 86.73 0.53 2.34 16 13 C 0.14 2.65 2.74 46.18 0.13 2.78 16 14 H 0.09 2.11 7.52 -2.39 -0.02 2.09 16 15 N -0.70 -14.10 5.12 -436.93 -2.24 -16.34 16 16 C 0.54 17.26 7.85 87.66 0.69 17.95 16 17 O -0.56 -23.20 15.55 -3.00 -0.05 -23.25 16 18 C -0.13 -4.65 6.16 71.24 0.44 -4.21 16 19 S -0.15 -7.84 20.57 -56.49 -1.16 -9.00 16 20 C -0.55 -29.97 9.50 67.95 0.65 -29.32 16 21 H 0.08 4.21 7.80 -2.91 -0.02 4.18 16 22 C 0.01 0.78 5.49 84.86 0.47 1.25 16 23 N -0.91 -54.71 13.22 21.65 0.29 -54.42 16 24 Si 0.99 42.32 29.55 68.60 2.03 44.34 16 25 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 26 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 27 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.73 8.08 -2.39 -0.02 0.71 16 31 H 0.08 1.41 8.09 -2.38 -0.02 1.39 16 32 H 0.07 1.22 7.99 -2.39 -0.02 1.21 16 33 H 0.07 1.00 5.92 -2.39 -0.01 0.98 16 34 H 0.09 1.01 8.09 -2.39 -0.02 0.99 16 35 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.09 1.73 8.01 -2.39 -0.02 1.71 16 37 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.09 1.57 5.88 -2.39 -0.01 1.55 16 41 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 42 H 0.42 5.56 8.54 -92.71 -0.79 4.77 16 43 H 0.11 3.51 8.14 -2.40 -0.02 3.49 16 44 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 45 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -77.41 386.18 2.23 -75.18 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.20 Total: 19.91 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: 5.91 Total: -3.46 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: -4.65 Total: -85.77 kcal Atomic # 8 Polarization: -41.11 SS G_CDS: -0.10 Total: -41.21 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.34 kcal Atomic # 16 Polarization: -7.84 SS G_CDS: -1.16 Total: -9.00 kcal Total: -77.41 2.23 -75.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072249757.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.848 kcal (2) G-P(sol) polarization free energy of solvation -77.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds