Wall clock time and date at job start Tue Mar 31 2020 14:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 110.64488 * 2 1 4 4 C 1.54328 * 110.87453 * 236.74534 * 2 1 3 5 5 N 1.47023 * 107.27355 * 219.37504 * 4 2 1 6 6 C 1.34771 * 125.65019 * 178.89278 * 5 4 2 7 7 O 1.21286 * 120.00252 * 175.17227 * 6 5 4 8 8 C 1.50705 * 119.99907 * 355.18145 * 6 5 4 9 9 C 1.52990 * 115.55217 * 66.30461 * 8 6 5 10 10 C 1.53002 * 117.49615 * 280.63522 * 8 6 5 11 11 C 1.52997 * 117.49678 * 211.97723 * 8 6 5 12 12 C 1.47429 * 108.70011 * 358.94133 * 5 4 2 13 13 C 1.54903 * 104.83434 * 24.13017 * 12 5 4 14 14 H 1.09005 * 111.03853 * 204.90214 * 13 12 5 15 15 N 1.46499 * 111.00827 * 81.06161 * 13 12 5 16 16 C 1.34780 * 119.99809 * 92.80345 * 15 13 12 17 17 O 1.21284 * 119.99801 * 0.02562 * 16 15 13 18 18 C 1.50703 * 119.99938 * 180.28015 * 16 15 13 19 19 S 1.81000 * 109.47109 * 179.72335 * 18 16 15 20 20 C 1.76198 * 100.00086 * 179.97438 * 19 18 16 21 21 H 1.08000 * 119.99765 * 0.02562 * 20 19 18 22 22 C 1.38793 * 120.00019 * 179.97438 * 20 19 18 23 23 N 1.31632 * 120.00335 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99846 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47287 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47319 * 120.00093 * 24 22 20 27 27 H 1.48502 * 109.47040 * 239.99944 * 24 22 20 28 28 H 1.08995 * 109.47041 * 296.86434 * 1 2 3 29 29 H 1.09005 * 109.47091 * 56.86564 * 1 2 3 30 30 H 1.09002 * 109.46893 * 176.85841 * 1 2 3 31 31 H 1.08997 * 109.87946 * 338.79137 * 4 2 1 32 32 H 1.09003 * 109.88105 * 99.95731 * 4 2 1 33 33 H 1.09003 * 109.47651 * 56.60336 * 9 8 6 34 34 H 1.09005 * 109.47412 * 176.60306 * 9 8 6 35 35 H 1.09007 * 109.47568 * 296.60557 * 9 8 6 36 36 H 1.09006 * 117.49483 * 0.02562 * 10 8 6 37 37 H 1.08996 * 117.50155 * 145.02241 * 10 8 6 38 38 H 1.08995 * 117.50052 * 214.97953 * 11 8 6 39 39 H 1.08999 * 117.50132 * 359.97438 * 11 8 6 40 40 H 1.08994 * 110.36572 * 265.28837 * 12 5 4 41 41 H 1.09005 * 110.36160 * 142.97040 * 12 5 4 42 42 H 0.96993 * 120.00268 * 272.80935 * 15 13 12 43 43 H 1.09004 * 109.46754 * 299.71963 * 18 16 15 44 44 H 1.08999 * 109.47209 * 59.72060 * 18 16 15 45 45 H 0.96991 * 120.00314 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0199 0.0000 4 6 2.0799 -0.7907 -1.2058 5 7 3.2494 -1.5471 -0.7352 6 6 3.9995 -2.3799 -1.4837 7 8 4.9964 -2.8860 -1.0136 8 6 3.5996 -2.6821 -2.9049 9 6 3.6709 -1.5018 -3.8757 10 6 2.4868 -3.7094 -3.1224 11 6 3.9371 -4.0697 -3.4539 12 6 3.4651 -1.2447 0.6915 13 6 2.0789 -0.7934 1.2152 14 1 2.1813 -0.1490 2.0885 15 7 1.2293 -1.9485 1.5153 16 6 1.2040 -2.4607 2.7617 17 8 1.8841 -1.9650 3.6350 18 6 0.3348 -3.6529 3.0689 19 16 0.5242 -4.1047 4.8113 20 6 -0.5701 -5.4834 4.8906 21 1 -1.1069 -5.7982 4.0079 22 6 -0.7413 -6.1656 6.0872 23 7 -0.0866 -5.7823 7.1629 24 14 -1.9008 -7.6278 6.1710 25 1 -2.5108 -7.8530 4.8360 26 1 -1.1431 -8.8377 6.5800 27 1 -2.9708 -7.3547 7.1639 28 1 -0.3633 0.4644 0.9167 29 1 -0.3633 0.5617 -0.8606 30 1 -0.3633 -1.0261 -0.0563 31 1 1.3191 -1.4774 -1.5768 32 1 2.3776 -0.1017 -1.9963 33 1 4.6797 -1.0890 -3.8725 34 1 3.4209 -1.8422 -4.8806 35 1 2.9629 -0.7331 -3.5659 36 1 2.0437 -4.1663 -2.2374 37 1 1.8058 -3.5446 -3.9573 38 1 4.2096 -4.1419 -4.5068 39 1 4.4488 -4.7639 -2.7873 40 1 4.1929 -0.4410 0.8031 41 1 3.7992 -2.1364 1.2220 42 1 0.6852 -2.3448 0.8170 43 1 -0.7074 -3.4037 2.8693 44 1 0.6343 -4.4923 2.4412 45 1 -0.2060 -6.2592 7.9990 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072249758.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:55 Heat of formation + Delta-G solvation = -46.915857 kcal Electronic energy + Delta-G solvation = -25796.642347 eV Core-core repulsion = 22134.103060 eV Total energy + Delta-G solvation = -3662.539287 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.88665 -39.49397 -37.95319 -36.80431 -34.07409 -32.48038 -32.42552 -30.32704 -29.15250 -28.18855 -26.78846 -25.50314 -24.32877 -22.79693 -21.87148 -21.03364 -20.07685 -19.08467 -17.91226 -17.06359 -16.95791 -16.25908 -15.94666 -15.60703 -15.18199 -14.98281 -14.81249 -14.33937 -14.07560 -13.81360 -13.70801 -13.49358 -13.18257 -13.09943 -12.92137 -12.76092 -12.61628 -12.44044 -12.29441 -12.03224 -11.86879 -11.59802 -11.30974 -11.08185 -11.07619 -11.02650 -10.87950 -10.75777 -10.37946 -9.91456 -9.81637 -9.47666 -9.18664 -9.07719 -8.72287 -8.24641 -6.50916 -6.22576 -3.93142 2.36576 2.64483 2.96793 3.02020 3.21077 3.27182 3.31524 3.35918 3.66055 3.97833 4.09490 4.19372 4.27532 4.41106 4.49372 4.49569 4.65297 4.85386 5.00999 5.02023 5.12336 5.13009 5.24157 5.25015 5.26399 5.32030 5.38751 5.39223 5.44411 5.54379 5.58019 5.63280 5.70408 5.74581 5.78293 5.80522 5.86029 5.89771 6.06420 6.10973 6.55936 7.26426 7.58826 7.62507 7.96707 8.34498 8.54740 9.22933 10.84919 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015466 B = 0.002863 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.950282 B = 9778.879980 C =10535.309546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 H 0.099 0.901 4 C 0.102 3.898 5 N -0.612 5.612 6 C 0.564 3.436 7 O -0.532 6.532 8 C -0.159 4.159 9 C -0.111 4.111 10 C -0.158 4.158 11 C -0.145 4.145 12 C 0.093 3.907 13 C 0.138 3.862 14 H 0.115 0.885 15 N -0.726 5.726 16 C 0.534 3.466 17 O -0.514 6.514 18 C -0.153 4.153 19 S -0.059 6.059 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.397 0.603 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.729 12.270 -24.834 27.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.131 4.131 3 H 0.117 0.883 4 C -0.021 4.021 5 N -0.346 5.346 6 C 0.352 3.648 7 O -0.408 6.408 8 C -0.163 4.163 9 C -0.168 4.168 10 C -0.196 4.196 11 C -0.182 4.182 12 C -0.031 4.031 13 C 0.032 3.968 14 H 0.133 0.867 15 N -0.380 5.380 16 C 0.321 3.679 17 O -0.388 6.388 18 C -0.304 4.304 19 S 0.168 5.832 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.232 0.768 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.498 12.737 -22.959 26.488 hybrid contribution -1.773 -1.683 -1.299 2.768 sum 1.725 11.054 -24.258 26.714 Atomic orbital electron populations 1.21706 0.92949 1.02465 1.02715 1.22566 0.97303 0.99736 0.93470 0.88266 1.22259 0.87982 0.94860 0.96978 1.48369 1.30155 1.44833 1.11257 1.19205 0.82240 0.77525 0.85791 1.90736 1.25507 1.51459 1.73107 1.21371 1.07421 0.93767 0.93697 1.21336 1.02622 0.95635 0.97254 1.23110 0.91887 1.00767 1.03802 1.23045 0.97784 0.95293 1.02062 1.22784 0.97457 1.02214 0.80621 1.22015 0.88830 0.88064 0.97934 0.86738 1.45921 1.47315 1.33018 1.11784 1.20342 0.81988 0.84187 0.81401 1.90710 1.41981 1.60371 1.45729 1.23525 1.01357 0.97646 1.07849 1.85410 1.59861 1.38951 0.98982 1.22898 1.29923 1.16507 0.99000 0.90908 1.24994 0.96210 0.97716 0.94686 1.70023 1.40013 1.39724 1.00491 0.86115 0.79964 0.81149 0.78253 1.19627 1.20551 1.20561 0.91395 0.92020 0.92176 0.90959 0.90900 0.91775 0.91373 0.91514 0.88312 0.87765 0.87863 0.87788 0.90449 0.89576 0.76767 0.89221 0.89340 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 8.73 37.16 0.32 -0.52 16 2 C -0.11 -0.74 3.41 -88.78 -0.30 -1.04 16 3 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 4 C 0.10 0.69 5.57 -3.06 -0.02 0.67 16 5 N -0.61 -6.37 3.33 -170.52 -0.57 -6.94 16 6 C 0.56 7.05 7.11 -10.99 -0.08 6.98 16 7 O -0.53 -9.10 17.01 5.55 0.09 -9.00 16 8 C -0.16 -1.41 1.87 -155.66 -0.29 -1.70 16 9 C -0.11 -0.69 9.53 37.15 0.35 -0.34 16 10 C -0.16 -1.17 9.96 -26.69 -0.27 -1.44 16 11 C -0.14 -1.23 9.75 -26.70 -0.26 -1.50 16 12 C 0.09 1.10 6.58 -2.53 -0.02 1.08 16 13 C 0.14 1.46 3.17 -65.78 -0.21 1.25 16 14 H 0.11 1.34 7.54 -51.93 -0.39 0.95 16 15 N -0.73 -9.00 4.54 -51.73 -0.24 -9.24 16 16 C 0.53 9.57 7.85 -10.98 -0.09 9.49 16 17 O -0.51 -11.25 15.50 5.55 0.09 -11.16 16 18 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 19 S -0.06 -1.58 20.57 -107.50 -2.21 -3.80 16 20 C -0.54 -15.21 9.50 30.94 0.29 -14.92 16 21 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -26.19 13.22 55.49 0.73 -25.45 16 24 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.37 6.50 -51.93 -0.34 0.03 16 31 H 0.07 0.43 7.78 -51.93 -0.40 0.03 16 32 H 0.07 0.38 6.22 -51.93 -0.32 0.06 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.32 8.10 -51.93 -0.42 -0.10 16 35 H 0.07 0.33 5.66 -51.93 -0.29 0.04 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.10 1.09 8.01 -51.93 -0.42 0.67 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.09 1.33 8.09 -51.93 -0.42 0.91 16 42 H 0.40 4.00 7.19 -40.82 -0.29 3.71 16 43 H 0.09 1.62 8.14 -51.91 -0.42 1.19 16 44 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 45 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 382.35 15.07 5.76 5.76 Total: -1.00 -36.46 382.35 -8.86 -45.32 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -7.07 Total: 0.93 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -0.43 Total: -2.81 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: -0.07 Total: -41.63 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: 0.18 Total: -20.16 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.46 -8.86 -45.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072249758.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.599 kcal (2) G-P(sol) polarization free energy of solvation -36.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds