Wall clock time and date at job start Tue Mar 31 2020 14:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 110.88704 * 2 1 4 4 C 1.55130 * 110.90254 * 124.08829 * 2 1 3 5 5 N 1.47427 * 104.72117 * 155.27596 * 4 2 1 6 6 C 1.34776 * 125.65111 * 155.81641 * 5 4 2 7 7 O 1.21277 * 119.99759 * 4.96843 * 6 5 4 8 8 C 1.50702 * 119.99973 * 184.96394 * 6 5 4 9 9 C 1.52993 * 115.54872 * 65.67678 * 8 6 5 10 10 C 1.52999 * 117.51676 * 211.37490 * 8 6 5 11 11 C 1.52993 * 60.00034 * 107.48331 * 10 8 6 12 12 C 1.47022 * 108.70041 * 335.55190 * 5 4 2 13 13 C 1.54319 * 107.27186 * 1.28828 * 12 5 4 14 14 H 1.09004 * 110.72216 * 263.64935 * 13 12 5 15 15 N 1.46508 * 110.72301 * 140.55500 * 13 12 5 16 16 C 1.34780 * 119.99625 * 86.45182 * 15 13 12 17 17 O 1.21273 * 120.00075 * 0.02562 * 16 15 13 18 18 C 1.50699 * 119.99359 * 180.02562 * 16 15 13 19 19 S 1.81005 * 109.47093 * 180.02562 * 18 16 15 20 20 C 1.76191 * 100.00148 * 179.97438 * 19 18 16 21 21 H 1.07996 * 120.00073 * 0.02562 * 20 19 18 22 22 C 1.38806 * 119.99752 * 179.97438 * 20 19 18 23 23 N 1.31624 * 120.00080 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99693 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47231 * 60.00281 * 24 22 20 26 26 H 1.48502 * 109.46890 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47038 * 300.00410 * 24 22 20 28 28 H 1.08999 * 109.47122 * 183.88829 * 1 2 3 29 29 H 1.09000 * 109.46902 * 303.88558 * 1 2 3 30 30 H 1.08997 * 109.46533 * 63.88643 * 1 2 3 31 31 H 1.09005 * 110.49669 * 36.43570 * 4 2 1 32 32 H 1.09000 * 110.34858 * 274.03891 * 4 2 1 33 33 H 1.09003 * 109.47075 * 269.21776 * 9 8 6 34 34 H 1.09002 * 109.47643 * 29.21672 * 9 8 6 35 35 H 1.09001 * 109.47444 * 149.21857 * 9 8 6 36 36 H 1.08998 * 117.49966 * 214.97725 * 10 8 6 37 37 H 1.09003 * 117.50173 * 359.97438 * 10 8 6 38 38 H 1.09009 * 117.49761 * 252.51335 * 11 10 8 39 39 H 1.08996 * 117.50284 * 107.49147 * 11 10 8 40 40 H 1.08998 * 109.88191 * 120.70411 * 12 5 4 41 41 H 1.08999 * 109.88506 * 241.71488 * 12 5 4 42 42 H 0.96999 * 119.99839 * 266.45649 * 15 13 12 43 43 H 1.08997 * 109.47124 * 299.99919 * 18 16 15 44 44 H 1.09000 * 109.47638 * 59.99971 * 18 16 15 45 45 H 0.96999 * 120.00053 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0836 -0.8122 1.2002 5 7 3.4272 -1.2433 0.7731 6 6 4.4477 -1.5621 1.5937 7 8 4.2739 -1.5931 2.7936 8 6 5.8046 -1.8800 1.0203 9 6 6.5144 -0.7184 0.3219 10 6 6.6736 -2.8866 1.7769 11 6 6.0201 -3.2840 0.4518 12 6 3.4675 -1.2740 -0.6962 13 6 2.0862 -0.8076 -1.2023 14 1 1.4479 -1.6629 -1.4243 15 7 2.2287 0.0502 -2.3814 16 6 2.3022 -0.4996 -3.6098 17 8 2.2500 -1.7043 -3.7391 18 6 2.4494 0.3828 -4.8225 19 16 2.5189 -0.6444 -6.3113 20 6 2.6860 0.6078 -7.5395 21 1 2.7168 1.6477 -7.2497 22 6 2.7791 0.2575 -8.8794 23 7 2.7420 -1.0099 -9.2324 24 14 2.9570 1.5851 -10.1815 25 1 4.1951 2.3648 -9.9276 26 1 3.0349 0.9545 -11.5238 27 1 1.7817 2.4913 -10.1283 28 1 -0.3633 -1.0253 0.0697 29 1 -0.3633 0.5730 0.8531 30 1 -0.3632 0.4523 -0.9228 31 1 1.4523 -1.6786 1.3983 32 1 2.1515 -0.1808 2.0861 33 1 6.2552 -0.7180 -0.7368 34 1 6.2010 0.2231 0.7730 35 1 7.5928 -0.8327 0.4318 36 1 7.7509 -2.7213 1.7771 37 1 6.2641 -3.3189 2.6899 38 1 5.1804 -3.9779 0.4929 39 1 6.6675 -3.3802 -0.4197 40 1 4.2426 -0.5995 -1.0600 41 1 3.6677 -2.2886 -1.0405 42 1 2.2702 1.0138 -2.2780 43 1 1.5957 1.0575 -4.8866 44 1 3.3671 0.9650 -4.7392 45 1 2.8067 -1.2546 -10.1688 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072249759.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:58 Heat of formation + Delta-G solvation = -50.689095 kcal Electronic energy + Delta-G solvation = -25493.241685 eV Core-core repulsion = 21830.538777 eV Total energy + Delta-G solvation = -3662.702907 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.81933 -39.50328 -38.02557 -36.77120 -34.20479 -32.80016 -32.47054 -30.05112 -29.11064 -27.98223 -27.05934 -25.52738 -23.94405 -22.71793 -22.20070 -20.97300 -20.23361 -18.99775 -17.88092 -17.21646 -16.76878 -16.29648 -16.22824 -15.57575 -15.07603 -14.87859 -14.83435 -14.36646 -14.04939 -13.84979 -13.72989 -13.42881 -13.24787 -13.19103 -12.83715 -12.68975 -12.59641 -12.50535 -12.26366 -12.10923 -11.81080 -11.52621 -11.50163 -11.09611 -11.07233 -11.03036 -10.82790 -10.79445 -10.32936 -9.96624 -9.87119 -9.52841 -9.13423 -9.07753 -8.90143 -8.29993 -6.55312 -6.25847 -3.96950 2.31748 2.53463 2.94142 2.97316 3.20401 3.24413 3.27107 3.41243 3.60160 3.95295 4.16370 4.26993 4.29744 4.41888 4.53823 4.55440 4.69103 4.83985 4.99079 5.06368 5.09449 5.10536 5.25233 5.35102 5.35543 5.40447 5.45708 5.48805 5.50924 5.53271 5.56766 5.62242 5.68064 5.79229 5.80221 5.82188 5.83546 5.89458 6.05111 6.07010 6.47042 7.20295 7.54465 7.56330 7.90005 8.30658 8.47515 9.19540 10.81473 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016634 B = 0.002664 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.849913 B =10509.957337 C =11542.375246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.091 0.909 4 C 0.112 3.888 5 N -0.613 5.613 6 C 0.569 3.431 7 O -0.540 6.540 8 C -0.161 4.161 9 C -0.109 4.109 10 C -0.144 4.144 11 C -0.158 4.158 12 C 0.088 3.912 13 C 0.142 3.858 14 H 0.106 0.894 15 N -0.729 5.729 16 C 0.534 3.466 17 O -0.513 6.513 18 C -0.154 4.154 19 S -0.058 6.058 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.401 0.599 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.167 2.340 21.155 21.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.110 0.890 4 C -0.011 4.011 5 N -0.347 5.347 6 C 0.357 3.643 7 O -0.417 6.417 8 C -0.164 4.164 9 C -0.167 4.167 10 C -0.181 4.181 11 C -0.195 4.195 12 C -0.036 4.036 13 C 0.036 3.964 14 H 0.124 0.876 15 N -0.384 5.384 16 C 0.320 3.680 17 O -0.386 6.386 18 C -0.305 4.305 19 S 0.168 5.832 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.116 0.884 39 H 0.126 0.874 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.235 0.765 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.053 0.143 21.462 21.560 hybrid contribution 0.209 2.747 -0.766 2.859 sum 2.262 2.890 20.696 21.018 Atomic orbital electron populations 1.21712 0.92811 1.02764 1.02661 1.22700 0.97157 0.99583 0.93579 0.89041 1.22349 0.82865 0.98457 0.97391 1.48327 1.11964 1.67225 1.07148 1.19230 0.83846 0.75790 0.85408 1.90693 1.83677 1.52525 1.14777 1.21389 0.94717 0.93847 1.06407 1.21300 0.99845 0.95450 1.00070 1.23084 0.98632 1.00167 0.96262 1.23119 1.03511 0.94698 0.98161 1.22608 0.98916 1.02952 0.79122 1.21914 0.95055 0.94700 0.84743 0.87578 1.45977 1.77213 1.09953 1.05220 1.20381 0.74913 0.89107 0.83574 1.90713 1.47317 1.14870 1.85711 1.23538 1.04903 1.03268 0.98773 1.85398 1.95848 1.09579 0.92352 1.22819 1.58562 0.94046 0.93120 0.90967 1.24987 0.94525 0.96148 0.97853 1.69998 1.46554 1.15766 1.17932 0.86231 0.78852 0.80781 0.79681 1.19922 1.20795 1.19932 0.91938 0.91959 0.91487 0.90847 0.90038 0.91265 0.91989 0.91258 0.87802 0.87997 0.88396 0.87449 0.90467 0.90258 0.76479 0.89132 0.89152 0.92083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.31 37.16 0.35 -0.62 16 2 C -0.11 -0.84 3.26 -88.35 -0.29 -1.13 16 3 H 0.09 0.62 8.00 -51.93 -0.42 0.20 16 4 C 0.11 1.01 6.36 -2.41 -0.02 0.99 16 5 N -0.61 -6.49 3.32 -170.38 -0.57 -7.06 16 6 C 0.57 6.97 7.03 -10.98 -0.08 6.90 16 7 O -0.54 -8.33 17.00 5.56 0.09 -8.24 16 8 C -0.16 -1.60 1.80 -155.67 -0.28 -1.88 16 9 C -0.11 -0.93 9.23 37.15 0.34 -0.58 16 10 C -0.14 -1.28 9.70 -26.74 -0.26 -1.54 16 11 C -0.16 -1.40 9.95 -26.74 -0.27 -1.67 16 12 C 0.09 0.92 6.12 -3.07 -0.02 0.90 16 13 C 0.14 1.45 2.70 -66.10 -0.18 1.27 16 14 H 0.11 1.26 7.60 -51.93 -0.39 0.87 16 15 N -0.73 -8.21 5.13 -52.03 -0.27 -8.48 16 16 C 0.53 8.86 7.84 -10.98 -0.09 8.77 16 17 O -0.51 -10.55 15.59 5.56 0.09 -10.46 16 18 C -0.15 -2.86 6.16 36.01 0.22 -2.64 16 19 S -0.06 -1.51 20.57 -107.50 -2.21 -3.72 16 20 C -0.54 -14.83 9.50 30.94 0.29 -14.53 16 21 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 22 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 23 N -0.87 -25.58 13.22 55.49 0.73 -24.85 16 24 Si 0.92 20.89 29.55 -169.99 -5.02 15.87 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 H 0.06 0.43 8.07 -51.93 -0.42 0.02 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.64 7.99 -51.93 -0.41 0.23 16 32 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 33 H 0.07 0.58 7.04 -51.93 -0.37 0.22 16 34 H 0.06 0.54 8.03 -51.93 -0.42 0.12 16 35 H 0.07 0.50 7.88 -51.93 -0.41 0.09 16 36 H 0.10 0.74 8.03 -51.93 -0.42 0.32 16 37 H 0.10 1.00 8.00 -51.93 -0.42 0.58 16 38 H 0.10 0.91 8.14 -51.92 -0.42 0.48 16 39 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.08 0.79 6.40 -51.93 -0.33 0.46 16 41 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.40 3.41 8.52 -40.82 -0.35 3.06 16 43 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 44 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 45 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 386.91 15.07 5.83 5.83 Total: -1.00 -34.56 386.91 -8.96 -43.52 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -7.27 Total: 1.37 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -0.36 Total: -3.78 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: -0.10 Total: -40.39 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: 0.18 Total: -18.70 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.56 -8.96 -43.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072249759.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.170 kcal (2) G-P(sol) polarization free energy of solvation -34.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds