Wall clock time and date at job start Tue Mar 31 2020 14:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.91554 * 2 1 4 4 C 1.54906 * 111.00272 * 123.90302 * 2 1 3 5 5 N 1.47430 * 104.82795 * 155.08079 * 4 2 1 6 6 C 1.34783 * 125.64155 * 155.82457 * 5 4 2 7 7 O 1.21277 * 120.00339 * 354.95934 * 6 5 4 8 8 C 1.50703 * 119.99568 * 174.95931 * 6 5 4 9 9 C 1.52997 * 115.55061 * 280.20748 * 8 6 5 10 10 C 1.52998 * 117.49446 * 134.49789 * 8 6 5 11 11 C 1.52996 * 60.00154 * 252.51425 * 10 8 6 12 12 C 1.47013 * 108.70555 * 335.87272 * 5 4 2 13 13 C 1.54319 * 107.27226 * 1.05650 * 12 5 4 14 14 H 1.09009 * 110.87100 * 140.62487 * 13 12 5 15 15 N 1.46492 * 110.72241 * 263.82740 * 13 12 5 16 16 C 1.34773 * 120.00602 * 268.52506 * 15 13 12 17 17 O 1.21291 * 119.99636 * 359.97438 * 16 15 13 18 18 C 1.50695 * 120.00442 * 179.97438 * 16 15 13 19 19 S 1.81003 * 109.47191 * 179.97438 * 18 16 15 20 20 C 1.76201 * 100.00060 * 180.02562 * 19 18 16 21 21 H 1.07999 * 119.99984 * 0.02562 * 20 19 18 22 22 C 1.38804 * 120.00052 * 180.02562 * 20 19 18 23 23 N 1.31632 * 119.99879 * 179.97438 * 22 20 19 24 24 Si 1.86792 * 119.99932 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47296 * 89.99955 * 24 22 20 26 26 H 1.48498 * 109.47347 * 210.00063 * 24 22 20 27 27 H 1.48504 * 109.47370 * 330.00448 * 24 22 20 28 28 H 1.09004 * 109.47385 * 183.89593 * 1 2 3 29 29 H 1.08994 * 109.47379 * 303.89958 * 1 2 3 30 30 H 1.08999 * 109.47121 * 63.89984 * 1 2 3 31 31 H 1.08996 * 110.36780 * 273.91824 * 4 2 1 32 32 H 1.09004 * 110.36506 * 36.13853 * 4 2 1 33 33 H 1.08997 * 109.47091 * 65.20309 * 9 8 6 34 34 H 1.09002 * 109.46594 * 185.19831 * 9 8 6 35 35 H 1.08994 * 109.47361 * 305.19712 * 9 8 6 36 36 H 1.08996 * 117.50488 * 0.02562 * 10 8 6 37 37 H 1.09002 * 117.49787 * 145.02056 * 10 8 6 38 38 H 1.09002 * 117.49833 * 252.51337 * 11 10 8 39 39 H 1.09000 * 117.51981 * 107.48814 * 11 10 8 40 40 H 1.09004 * 109.88308 * 241.63831 * 12 5 4 41 41 H 1.09003 * 109.88101 * 120.47921 * 12 5 4 42 42 H 0.97002 * 119.99956 * 88.52087 * 15 13 12 43 43 H 1.09000 * 109.47184 * 60.00100 * 18 16 15 44 44 H 1.08999 * 109.47580 * 299.99997 * 18 16 15 45 45 H 0.96993 * 119.99733 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0852 -0.8066 1.2003 5 7 3.4271 -1.2431 0.7732 6 6 4.4481 -1.5602 1.5939 7 8 4.3322 -1.4103 2.7918 8 6 5.7337 -2.1009 1.0230 9 6 5.7206 -3.5869 0.6592 10 6 7.0437 -1.5143 1.5528 11 6 6.5642 -1.1651 0.1424 12 6 3.4674 -1.2741 -0.6961 13 6 2.0861 -0.8079 -1.2023 14 1 2.1892 -0.1706 -2.0806 15 7 1.2268 -1.9573 -1.4963 16 6 1.2060 -2.4834 -2.7369 17 8 1.8986 -2.0049 -3.6102 18 6 0.3225 -3.6662 -3.0392 19 16 0.5156 -4.1351 -4.7768 20 6 -0.5969 -5.4995 -4.8510 21 1 -1.1436 -5.7990 -3.9691 22 6 -0.7706 -6.1893 -6.0429 23 7 -1.6013 -7.2089 -6.0982 24 14 0.1744 -5.6707 -7.5684 25 1 1.4664 -6.4008 -7.6224 26 1 -0.6253 -5.9896 -8.7783 27 1 0.4336 -4.2093 -7.5173 28 1 -0.3634 -1.0253 0.0698 29 1 -0.3634 0.5731 0.8529 30 1 -0.3633 0.4521 -0.9229 31 1 2.1560 -0.1720 2.0836 32 1 1.4507 -1.6694 1.4035 33 1 5.0160 -3.7554 -0.1552 34 1 6.7186 -3.8928 0.3452 35 1 5.4181 -4.1711 1.5281 36 1 6.9758 -0.7376 2.3144 37 1 7.8966 -2.1871 1.6423 38 1 7.1017 -1.6083 -0.6960 39 1 6.1807 -0.1586 -0.0244 40 1 3.6650 -2.2894 -1.0402 41 1 4.2426 -0.5998 -1.0600 42 1 0.6727 -2.3399 -0.7980 43 1 -0.7174 -3.4011 -2.8483 44 1 0.6066 -4.5042 -2.4027 45 1 -1.7230 -7.6906 -6.9311 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072249760.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:01 Heat of formation + Delta-G solvation = -47.972394 kcal Electronic energy + Delta-G solvation = -25748.154307 eV Core-core repulsion = 22085.569205 eV Total energy + Delta-G solvation = -3662.585102 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.95206 -39.61999 -38.04558 -36.86763 -34.19974 -32.61478 -32.47247 -30.20192 -29.10329 -28.26241 -27.15549 -25.65454 -24.06232 -22.79445 -22.23217 -21.09766 -20.25266 -18.95764 -17.99761 -17.11611 -16.87275 -16.47216 -16.04549 -15.72175 -15.18430 -15.00497 -14.90854 -14.68155 -14.00733 -13.82181 -13.66836 -13.59505 -13.28738 -13.08150 -12.88665 -12.82426 -12.70699 -12.54857 -12.38826 -12.15925 -11.90258 -11.71937 -11.35424 -11.30019 -11.10084 -11.04527 -10.88525 -10.64290 -10.38154 -9.98168 -9.89977 -9.64814 -9.20701 -9.03888 -8.92309 -8.55719 -6.96783 -6.32659 -4.04973 2.31078 2.56184 2.68861 2.82995 3.22439 3.29986 3.32456 3.46459 3.58264 3.86731 4.21464 4.25120 4.29170 4.35777 4.45591 4.49048 4.66550 4.68216 4.84020 5.02711 5.04872 5.06511 5.16496 5.22443 5.26103 5.32036 5.35511 5.38012 5.46489 5.48536 5.49641 5.54539 5.66701 5.68855 5.72709 5.74082 5.82592 5.87843 5.94932 5.98581 6.40848 7.17354 7.46346 7.87530 7.90368 8.35751 8.38089 9.13329 10.76638 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016144 B = 0.002910 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.968588 B = 9620.289302 C =10500.781380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 H 0.098 0.902 4 C 0.106 3.894 5 N -0.613 5.613 6 C 0.568 3.432 7 O -0.539 6.539 8 C -0.156 4.156 9 C -0.108 4.108 10 C -0.145 4.145 11 C -0.163 4.163 12 C 0.090 3.910 13 C 0.139 3.861 14 H 0.113 0.887 15 N -0.727 5.727 16 C 0.534 3.466 17 O -0.516 6.516 18 C -0.125 4.125 19 S -0.140 6.140 20 C -0.522 4.522 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.400 0.600 43 H 0.098 0.902 44 H 0.097 0.903 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.378 14.655 15.137 23.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.131 4.131 3 H 0.117 0.883 4 C -0.016 4.016 5 N -0.347 5.347 6 C 0.357 3.643 7 O -0.415 6.415 8 C -0.159 4.159 9 C -0.166 4.166 10 C -0.183 4.183 11 C -0.200 4.200 12 C -0.034 4.034 13 C 0.033 3.967 14 H 0.131 0.869 15 N -0.382 5.382 16 C 0.320 3.680 17 O -0.391 6.391 18 C -0.276 4.276 19 S 0.086 5.914 20 C -0.670 4.670 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.516 5.516 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.115 0.885 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.236 0.764 43 H 0.116 0.884 44 H 0.115 0.885 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.443 15.350 14.256 24.366 hybrid contribution -0.859 -0.894 0.573 1.365 sum 11.584 14.457 14.829 23.729 Atomic orbital electron populations 1.21654 0.92809 1.02562 1.02795 1.22688 0.97257 0.99613 0.93535 0.88347 1.22363 0.82949 0.98481 0.97803 1.48412 1.12097 1.66980 1.07169 1.19233 0.83056 0.76608 0.85435 1.90698 1.82048 1.53841 1.14927 1.21372 0.90889 0.96880 1.06736 1.21246 1.03003 0.90376 1.01938 1.23035 0.95232 1.02966 0.97026 1.23148 1.02318 0.99691 0.94849 1.22645 0.98427 1.02973 0.79398 1.21871 0.88400 0.87969 0.98482 0.86867 1.46007 1.46517 1.33347 1.12295 1.20319 0.82215 0.83985 0.81477 1.90708 1.41901 1.60962 1.45486 1.23283 1.01921 0.98001 1.04372 1.84776 1.59996 1.41565 1.05019 1.22309 1.28201 1.15193 1.01277 0.89393 1.24720 0.94361 0.93744 0.98496 1.69936 1.34786 1.19193 1.27724 0.86733 0.80474 0.82091 0.82532 1.19202 1.19933 1.15914 0.92083 0.91881 0.91386 0.90017 0.91170 0.91480 0.91164 0.91650 0.88222 0.87754 0.87560 0.88451 0.90262 0.90222 0.76426 0.88396 0.88517 0.91901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 8.85 37.16 0.33 -0.57 16 2 C -0.11 -0.78 3.51 -88.47 -0.31 -1.09 16 3 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 4 C 0.11 0.91 6.36 -2.53 -0.02 0.89 16 5 N -0.61 -6.09 3.33 -170.52 -0.57 -6.66 16 6 C 0.57 6.73 7.01 -10.98 -0.08 6.66 16 7 O -0.54 -8.22 17.22 5.56 0.10 -8.13 16 8 C -0.16 -1.48 1.82 -155.66 -0.28 -1.76 16 9 C -0.11 -0.95 9.71 37.16 0.36 -0.59 16 10 C -0.15 -1.18 9.84 -26.73 -0.26 -1.45 16 11 C -0.16 -1.23 8.89 -26.73 -0.24 -1.47 16 12 C 0.09 0.84 5.95 -3.07 -0.02 0.82 16 13 C 0.14 1.29 3.10 -66.10 -0.20 1.08 16 14 H 0.11 1.17 7.55 -51.92 -0.39 0.78 16 15 N -0.73 -7.86 4.45 -52.03 -0.23 -8.09 16 16 C 0.53 8.39 7.85 -10.99 -0.09 8.31 16 17 O -0.52 -9.94 15.51 5.55 0.09 -9.85 16 18 C -0.13 -2.25 6.16 36.00 0.22 -2.03 16 19 S -0.14 -3.39 18.55 -107.50 -1.99 -5.39 16 20 C -0.52 -14.66 10.04 30.94 0.31 -14.35 16 21 H 0.09 2.58 8.03 -52.49 -0.42 2.16 16 22 C 0.10 2.74 5.50 -17.43 -0.10 2.65 16 23 N -0.88 -26.18 13.97 55.49 0.78 -25.40 16 24 Si 0.86 21.30 27.74 -169.99 -4.71 16.59 16 25 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.24 -5.80 6.74 56.52 0.38 -5.42 16 28 H 0.06 0.39 6.48 -51.93 -0.34 0.05 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.74 7.99 -51.93 -0.41 0.32 16 32 H 0.07 0.58 7.98 -51.93 -0.41 0.17 16 33 H 0.07 0.62 7.32 -51.93 -0.38 0.24 16 34 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.10 0.71 7.75 -51.93 -0.40 0.31 16 40 H 0.08 0.85 7.22 -51.93 -0.37 0.48 16 41 H 0.08 0.67 7.05 -51.93 -0.37 0.30 16 42 H 0.40 3.54 7.11 -40.82 -0.29 3.25 16 43 H 0.10 1.64 8.14 -51.92 -0.42 1.21 16 44 H 0.10 1.63 8.14 -51.92 -0.42 1.21 16 45 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 380.46 15.07 5.73 5.73 Total: -1.00 -34.44 380.46 -8.36 -42.80 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -7.17 Total: 1.30 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -0.37 Total: -2.90 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: -0.02 Total: -40.15 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: 0.18 Total: -17.98 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.71 Total: 16.59 kcal Atomic # 16 Polarization: -3.39 SS G_CDS: -1.99 Total: -5.39 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.44 -8.36 -42.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072249760.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.172 kcal (2) G-P(sol) polarization free energy of solvation -34.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds