Wall clock time and date at job start Tue Mar 31 2020 14:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.49308 * 2 1 4 4 C 1.53192 * 109.49443 * 120.06142 * 2 1 3 5 5 N 1.46931 * 108.77040 * 174.62033 * 4 2 1 6 6 C 1.34784 * 120.62757 * 126.37050 * 5 4 2 7 7 O 1.21274 * 119.99897 * 359.72693 * 6 5 4 8 8 C 1.50695 * 119.99635 * 179.97438 * 6 5 4 9 9 S 1.81006 * 109.46975 * 180.02562 * 8 6 5 10 10 C 1.76200 * 100.00155 * 179.97438 * 9 8 6 11 11 H 1.08005 * 119.99670 * 0.02562 * 10 9 8 12 12 C 1.38796 * 120.00050 * 180.02562 * 10 9 8 13 13 N 1.31626 * 119.99898 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00049 * 180.02562 * 12 10 9 15 15 H 1.48507 * 109.47184 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47541 * 119.99901 * 14 12 10 17 17 H 1.48497 * 109.47123 * 239.99909 * 14 12 10 18 18 C 1.46918 * 118.74146 * 306.64550 * 5 4 2 19 19 C 1.52761 * 109.01190 * 53.30689 * 18 5 4 20 20 C 1.53036 * 109.52537 * 239.91882 * 2 1 3 21 21 H 1.08996 * 109.46247 * 298.68720 * 20 2 1 22 22 N 1.46501 * 109.46396 * 58.65968 * 20 2 1 23 23 C 1.34771 * 120.00381 * 205.00255 * 22 20 2 24 24 O 1.21275 * 119.99750 * 359.97438 * 23 22 20 25 25 C 1.50697 * 120.00048 * 179.97438 * 23 22 20 26 26 C 1.52995 * 117.49920 * 248.61990 * 25 23 22 27 27 C 1.53005 * 60.00260 * 252.51054 * 26 25 23 28 28 H 1.08995 * 109.47638 * 299.93739 * 1 2 3 29 29 H 1.09006 * 109.47005 * 59.93879 * 1 2 3 30 30 H 1.08999 * 109.46961 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.58535 * 54.83851 * 4 2 1 32 32 H 1.09001 * 109.70425 * 294.47566 * 4 2 1 33 33 H 1.09005 * 109.47403 * 300.00056 * 8 6 5 34 34 H 1.09002 * 109.47422 * 60.00295 * 8 6 5 35 35 H 0.97005 * 120.00072 * 180.02562 * 13 12 10 36 36 H 1.08998 * 109.59258 * 173.14856 * 18 5 4 37 37 H 1.09001 * 109.58913 * 293.56820 * 18 5 4 38 38 H 1.08997 * 109.56476 * 185.55091 * 19 18 5 39 39 H 1.09005 * 109.38339 * 65.51713 * 19 18 5 40 40 H 0.97006 * 119.99564 * 24.99988 * 22 20 2 41 41 H 1.09003 * 115.54868 * 34.32795 * 25 23 22 42 42 H 1.08998 * 117.50055 * 0.02562 * 26 25 23 43 43 H 1.08998 * 117.50116 * 145.02519 * 26 25 23 44 44 H 1.08994 * 117.49607 * 252.51567 * 27 26 25 45 45 H 1.08993 * 117.49899 * 107.48861 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0412 -0.7234 1.2499 5 7 3.5046 -0.8280 1.1702 6 6 4.2807 -0.3839 2.1788 7 8 3.7724 0.1121 3.1618 8 6 5.7802 -0.4988 2.0824 9 16 6.5348 0.1788 3.5816 10 6 8.2379 -0.0772 3.2096 11 1 8.5233 -0.5349 2.2739 12 6 9.2126 0.3092 4.1190 13 7 8.8647 0.8674 5.2592 14 14 11.0182 0.0383 3.7243 15 1 11.1427 -0.6013 2.3898 16 1 11.7244 1.3447 3.7154 17 1 11.6230 -0.8442 4.7541 18 6 4.1062 -1.4202 -0.0322 19 6 3.5715 -0.6942 -1.2653 20 6 2.0415 -0.7229 -1.2481 21 1 1.6979 -1.7573 -1.2351 22 7 1.5275 -0.0531 -2.4453 23 6 1.4001 -0.7384 -3.5988 24 8 1.7113 -1.9096 -3.6457 25 6 0.8708 -0.0494 -4.8301 26 6 -0.5082 -0.4733 -5.3391 27 6 0.7498 -0.8815 -6.1083 28 1 -0.3634 0.5128 0.8905 29 1 -0.3633 0.5148 -0.8895 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6056 -1.7214 1.2982 32 1 1.7631 -0.1597 2.1403 33 1 6.0583 -1.5476 1.9782 34 1 6.1322 0.0585 1.2143 35 1 9.5459 1.1378 5.8946 36 1 5.1901 -1.3142 0.0112 37 1 3.8425 -2.4763 -0.0906 38 1 3.9346 -1.1887 -2.1662 39 1 3.9161 0.3399 -1.2540 40 1 1.2789 0.8838 -2.4078 41 1 1.1464 0.9998 -4.9368 42 1 -1.0330 -1.2503 -4.7832 43 1 -1.1404 0.2970 -5.7809 44 1 0.9454 -0.3796 -7.0559 45 1 1.0530 -1.9273 -6.0586 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073612004.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:41 Heat of formation + Delta-G solvation = -55.062166 kcal Electronic energy + Delta-G solvation = -25349.499816 eV Core-core repulsion = 21686.607278 eV Total energy + Delta-G solvation = -3662.892538 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.73505 -39.70553 -37.82472 -36.36014 -34.82963 -33.24871 -32.43419 -31.23725 -29.54767 -26.83468 -25.83967 -25.36651 -23.67714 -22.85748 -22.54893 -20.87426 -20.27978 -19.14418 -17.81179 -17.66391 -16.98895 -16.24211 -15.79130 -15.66623 -15.26682 -15.10641 -14.80877 -14.53964 -14.25220 -14.05317 -13.89726 -13.48174 -13.21515 -12.95277 -12.84550 -12.64198 -12.34297 -12.22015 -11.99704 -11.90307 -11.68842 -11.33228 -11.24079 -11.07470 -11.07294 -11.01754 -10.96356 -10.76270 -10.68794 -10.14044 -9.80052 -9.43687 -9.29149 -9.07883 -8.56771 -8.22730 -6.50684 -6.22235 -3.92730 2.16849 2.73707 2.90761 3.05585 3.21330 3.25937 3.30973 3.43373 3.58536 4.19377 4.20710 4.31684 4.38233 4.43683 4.50710 4.61644 4.71866 4.88819 4.89685 5.03916 5.13083 5.14502 5.17777 5.21378 5.31029 5.38569 5.40676 5.49488 5.55150 5.56512 5.61270 5.69107 5.69971 5.78150 5.86725 5.87100 5.91508 6.04175 6.11387 6.19312 6.60445 7.17505 7.52546 7.59682 7.91772 8.35030 8.53730 9.23312 10.85224 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.020985 B = 0.002409 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.975286 B =11618.580935 C =12618.317990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 H 0.082 0.918 4 C 0.122 3.878 5 N -0.622 5.622 6 C 0.536 3.464 7 O -0.517 6.517 8 C -0.151 4.151 9 S -0.062 6.062 10 C -0.534 4.534 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.112 3.888 19 C -0.145 4.145 20 C 0.152 3.848 21 H 0.090 0.910 22 N -0.720 5.720 23 C 0.543 3.457 24 O -0.539 6.539 25 C -0.197 4.197 26 C -0.153 4.153 27 C -0.148 4.148 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.268 0.732 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.401 0.599 41 H 0.123 0.877 42 H 0.099 0.901 43 H 0.104 0.896 44 H 0.103 0.897 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.187 -1.551 -20.920 28.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.133 4.133 3 H 0.100 0.900 4 C -0.002 4.002 5 N -0.358 5.358 6 C 0.324 3.676 7 O -0.391 6.391 8 C -0.301 4.301 9 S 0.165 5.835 10 C -0.682 4.682 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.012 4.012 19 C -0.185 4.185 20 C 0.047 3.953 21 H 0.108 0.892 22 N -0.370 5.370 23 C 0.330 3.670 24 O -0.416 6.416 25 C -0.218 4.218 26 C -0.190 4.190 27 C -0.185 4.185 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.112 0.888 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.235 0.765 41 H 0.141 0.859 42 H 0.118 0.882 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -19.643 -1.595 -19.291 27.578 hybrid contribution 1.739 -0.148 -1.452 2.270 sum -17.904 -1.744 -20.743 27.456 Atomic orbital electron populations 1.21755 0.93860 1.02368 1.02175 1.21800 0.96501 1.00736 0.94276 0.89995 1.21521 0.80032 1.00577 0.98050 1.48142 1.06088 1.62896 1.18647 1.20337 0.88861 0.76519 0.81836 1.90687 1.75008 1.42810 1.30574 1.23559 0.93666 1.05380 1.07541 1.85395 1.02316 1.78912 1.16879 1.22897 0.91172 1.47040 1.07103 0.90892 1.24994 0.99599 0.94563 0.94472 1.70028 1.34039 1.38421 1.07786 0.86117 0.82813 0.78080 0.78489 1.19608 1.20572 1.20559 1.21583 0.99361 0.96993 0.83301 1.22260 0.95315 1.02173 0.98741 1.21017 0.93294 0.97760 0.83206 0.89155 1.46008 1.66387 1.14650 1.09943 1.19655 0.77225 0.86507 0.83640 1.90707 1.49857 1.16357 1.84699 1.22221 1.03620 1.01049 0.94910 1.22936 0.89618 1.03534 1.02959 1.22956 1.00471 1.01405 0.93687 0.91862 0.92349 0.92349 0.91559 0.88283 0.89211 0.89264 0.92244 0.88791 0.91193 0.90097 0.91025 0.76500 0.85877 0.88249 0.87786 0.87904 0.87353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.03 37.16 0.34 -0.68 16 2 C -0.11 -1.00 2.46 -90.50 -0.22 -1.23 16 3 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 4 C 0.12 1.41 5.72 -3.71 -0.02 1.39 16 5 N -0.62 -8.69 2.98 -173.03 -0.52 -9.20 16 6 C 0.54 10.11 7.72 -10.98 -0.08 10.03 16 7 O -0.52 -11.65 15.27 5.56 0.08 -11.57 16 8 C -0.15 -3.06 4.50 36.00 0.16 -2.90 16 9 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 10 C -0.53 -15.19 9.50 30.94 0.29 -14.90 16 11 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 12 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 13 N -0.87 -26.15 13.22 55.49 0.73 -25.41 16 14 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 15 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 C 0.11 1.27 6.31 -3.94 -0.02 1.25 16 19 C -0.15 -1.46 5.63 -26.83 -0.15 -1.61 16 20 C 0.15 1.38 1.88 -67.89 -0.13 1.25 16 21 H 0.09 0.96 7.58 -51.93 -0.39 0.57 16 22 N -0.72 -5.51 4.37 -53.77 -0.23 -5.75 16 23 C 0.54 5.09 7.58 -10.99 -0.08 5.00 16 24 O -0.54 -7.15 15.92 5.56 0.09 -7.06 16 25 C -0.20 -1.28 6.19 -91.77 -0.57 -1.85 16 26 C -0.15 -0.83 10.23 -26.73 -0.27 -1.10 16 27 C -0.15 -0.94 10.04 -26.73 -0.27 -1.21 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.35 7.37 -51.93 -0.38 -0.03 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.10 1.32 7.00 -51.93 -0.36 0.96 16 33 H 0.09 1.70 7.95 -51.91 -0.41 1.29 16 34 H 0.09 1.68 7.68 -51.92 -0.40 1.28 16 35 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.09 1.10 5.94 -51.93 -0.31 0.79 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.40 2.17 8.31 -40.82 -0.34 1.83 16 41 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.11 0.87 7.67 -51.93 -0.40 0.47 16 LS Contribution 380.66 15.07 5.74 5.74 Total: -1.00 -35.57 380.66 -9.66 -45.24 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -7.19 Total: 0.06 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -1.13 Total: -4.57 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: -0.02 Total: -40.36 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: 0.17 Total: -18.63 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.57 -9.66 -45.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073612004.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.825 kcal (2) G-P(sol) polarization free energy of solvation -35.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds