Wall clock time and date at job start Tue Mar 31 2020 14:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.49308 * 2 1 4 4 C 1.53192 * 109.49443 * 120.06142 * 2 1 3 5 5 N 1.46931 * 108.77040 * 174.62033 * 4 2 1 6 6 C 1.34784 * 120.62757 * 126.37050 * 5 4 2 7 7 O 1.21274 * 119.99897 * 359.72693 * 6 5 4 8 8 C 1.50695 * 119.99635 * 179.97438 * 6 5 4 9 9 S 1.81006 * 109.46975 * 180.02562 * 8 6 5 10 10 C 1.76200 * 100.00155 * 179.97438 * 9 8 6 11 11 H 1.08005 * 119.99670 * 0.02562 * 10 9 8 12 12 C 1.38796 * 120.00050 * 180.02562 * 10 9 8 13 13 N 1.31626 * 119.99898 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00049 * 180.02562 * 12 10 9 15 15 H 1.48507 * 109.47184 * 359.97438 * 14 12 10 16 16 H 1.48501 * 109.47541 * 119.99901 * 14 12 10 17 17 H 1.48497 * 109.47123 * 239.99909 * 14 12 10 18 18 C 1.46918 * 118.74146 * 306.64550 * 5 4 2 19 19 C 1.52761 * 109.01190 * 53.30689 * 18 5 4 20 20 C 1.53036 * 109.52537 * 239.91882 * 2 1 3 21 21 H 1.08996 * 109.46247 * 298.68720 * 20 2 1 22 22 N 1.46501 * 109.46396 * 58.65968 * 20 2 1 23 23 C 1.34771 * 120.00381 * 205.00255 * 22 20 2 24 24 O 1.21275 * 119.99750 * 359.97438 * 23 22 20 25 25 C 1.50697 * 120.00048 * 179.97438 * 23 22 20 26 26 C 1.52995 * 117.49920 * 248.61990 * 25 23 22 27 27 C 1.53005 * 60.00260 * 252.51054 * 26 25 23 28 28 H 1.08995 * 109.47638 * 299.93739 * 1 2 3 29 29 H 1.09006 * 109.47005 * 59.93879 * 1 2 3 30 30 H 1.08999 * 109.46961 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.58535 * 54.83851 * 4 2 1 32 32 H 1.09001 * 109.70425 * 294.47566 * 4 2 1 33 33 H 1.09005 * 109.47403 * 300.00056 * 8 6 5 34 34 H 1.09002 * 109.47422 * 60.00295 * 8 6 5 35 35 H 0.97005 * 120.00072 * 180.02562 * 13 12 10 36 36 H 1.08998 * 109.59258 * 173.14856 * 18 5 4 37 37 H 1.09001 * 109.58913 * 293.56820 * 18 5 4 38 38 H 1.08997 * 109.56476 * 185.55091 * 19 18 5 39 39 H 1.09005 * 109.38339 * 65.51713 * 19 18 5 40 40 H 0.97006 * 119.99564 * 24.99988 * 22 20 2 41 41 H 1.09003 * 115.54868 * 34.32795 * 25 23 22 42 42 H 1.08998 * 117.50055 * 0.02562 * 26 25 23 43 43 H 1.08998 * 117.50116 * 145.02519 * 26 25 23 44 44 H 1.08994 * 117.49607 * 252.51567 * 27 26 25 45 45 H 1.08993 * 117.49899 * 107.48861 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0412 -0.7234 1.2499 5 7 3.5046 -0.8280 1.1702 6 6 4.2807 -0.3839 2.1788 7 8 3.7724 0.1121 3.1618 8 6 5.7802 -0.4988 2.0824 9 16 6.5348 0.1788 3.5816 10 6 8.2379 -0.0772 3.2096 11 1 8.5233 -0.5349 2.2739 12 6 9.2126 0.3092 4.1190 13 7 8.8647 0.8674 5.2592 14 14 11.0182 0.0383 3.7243 15 1 11.1427 -0.6013 2.3898 16 1 11.7244 1.3447 3.7154 17 1 11.6230 -0.8442 4.7541 18 6 4.1062 -1.4202 -0.0322 19 6 3.5715 -0.6942 -1.2653 20 6 2.0415 -0.7229 -1.2481 21 1 1.6979 -1.7573 -1.2351 22 7 1.5275 -0.0531 -2.4453 23 6 1.4001 -0.7384 -3.5988 24 8 1.7113 -1.9096 -3.6457 25 6 0.8708 -0.0494 -4.8301 26 6 -0.5082 -0.4733 -5.3391 27 6 0.7498 -0.8815 -6.1083 28 1 -0.3634 0.5128 0.8905 29 1 -0.3633 0.5148 -0.8895 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6056 -1.7214 1.2982 32 1 1.7631 -0.1597 2.1403 33 1 6.0583 -1.5476 1.9782 34 1 6.1322 0.0585 1.2143 35 1 9.5459 1.1378 5.8946 36 1 5.1901 -1.3142 0.0112 37 1 3.8425 -2.4763 -0.0906 38 1 3.9346 -1.1887 -2.1662 39 1 3.9161 0.3399 -1.2540 40 1 1.2789 0.8838 -2.4078 41 1 1.1464 0.9998 -4.9368 42 1 -1.0330 -1.2503 -4.7832 43 1 -1.1404 0.2970 -5.7809 44 1 0.9454 -0.3796 -7.0559 45 1 1.0530 -1.9273 -6.0586 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073612004.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:40 Heat of formation + Delta-G solvation = -78.480637 kcal Electronic energy + Delta-G solvation = -25350.515317 eV Core-core repulsion = 21686.607278 eV Total energy + Delta-G solvation = -3663.908039 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.64180 -40.75684 -38.89042 -37.00273 -35.86273 -34.59391 -34.08747 -32.21367 -31.00632 -27.81903 -27.54579 -26.60679 -24.50017 -23.41162 -23.27895 -21.72450 -21.11505 -20.38721 -19.52839 -18.44629 -18.23451 -17.20630 -17.05547 -16.88427 -16.69550 -16.14081 -15.89957 -15.85539 -15.23432 -15.10182 -14.95012 -14.56825 -14.43978 -14.38478 -13.73358 -13.53375 -13.50681 -13.23812 -13.16595 -12.98384 -12.91949 -12.70137 -12.48613 -12.42553 -12.18797 -12.00602 -11.71291 -11.58459 -11.52209 -11.38300 -11.16631 -10.95543 -10.87066 -10.28328 -10.08898 -9.75902 -8.67957 -8.35602 -6.13670 1.24287 1.40716 1.44635 1.49284 1.53218 1.56536 2.03567 2.12780 2.26257 2.94334 2.98601 3.22197 3.45413 3.66664 3.72372 3.75880 3.84363 3.89678 3.99473 4.02839 4.18969 4.23604 4.24501 4.31600 4.41230 4.46006 4.59804 4.65411 4.68697 4.76297 4.76839 4.87038 4.92456 4.99655 5.04397 5.06073 5.19027 5.24146 5.30374 5.41365 5.46469 5.51748 6.18970 6.22115 6.55083 7.05851 7.09959 7.24910 8.73834 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.020985 B = 0.002409 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.975286 B =11618.580935 C =12618.317990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.100 4.100 3 H 0.080 0.920 4 C 0.116 3.884 5 N -0.607 5.607 6 C 0.536 3.464 7 O -0.562 6.562 8 C -0.126 4.126 9 S -0.149 6.149 10 C -0.545 4.545 11 H 0.082 0.918 12 C 0.013 3.987 13 N -0.910 5.910 14 Si 0.999 3.001 15 H -0.257 1.257 16 H -0.273 1.273 17 H -0.274 1.274 18 C 0.106 3.894 19 C -0.137 4.137 20 C 0.157 3.843 21 H 0.079 0.921 22 N -0.707 5.707 23 C 0.539 3.461 24 O -0.584 6.584 25 C -0.200 4.200 26 C -0.141 4.141 27 C -0.157 4.157 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.271 0.729 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.415 0.585 41 H 0.150 0.850 42 H 0.088 0.912 43 H 0.130 0.870 44 H 0.123 0.877 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.565 -1.406 -23.631 30.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.120 4.120 3 H 0.098 0.902 4 C -0.006 4.006 5 N -0.341 5.341 6 C 0.324 3.676 7 O -0.441 6.441 8 C -0.277 4.277 9 S 0.078 5.922 10 C -0.692 4.692 11 H 0.100 0.900 12 C -0.192 4.192 13 N -0.547 5.547 14 Si 0.820 3.180 15 H -0.181 1.181 16 H -0.198 1.198 17 H -0.199 1.199 18 C -0.016 4.016 19 C -0.177 4.177 20 C 0.052 3.948 21 H 0.097 0.903 22 N -0.357 5.357 23 C 0.327 3.673 24 O -0.464 6.464 25 C -0.220 4.220 26 C -0.178 4.178 27 C -0.195 4.195 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.080 0.920 36 H 0.111 0.889 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.252 0.748 41 H 0.167 0.833 42 H 0.107 0.893 43 H 0.148 0.852 44 H 0.141 0.859 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -20.060 -1.441 -22.050 29.845 hybrid contribution 1.735 -0.254 -0.690 1.884 sum -18.325 -1.694 -22.740 29.254 Atomic orbital electron populations 1.21731 0.92100 1.02746 1.03107 1.21664 0.97778 0.99983 0.92581 0.90157 1.21738 0.78352 1.01679 0.98852 1.48103 1.06936 1.61075 1.17960 1.20080 0.88462 0.76736 0.82352 1.90672 1.75457 1.45322 1.32622 1.23385 0.94502 1.05810 1.03963 1.85553 1.03815 1.80339 1.22479 1.23215 0.91356 1.47113 1.07554 0.90013 1.26123 1.05002 0.93936 0.94107 1.70186 1.35867 1.39586 1.09064 0.84908 0.75942 0.78265 0.78848 1.18096 1.19844 1.19939 1.21801 0.99350 0.97906 0.82589 1.22168 0.95938 1.01854 0.97720 1.20845 0.92657 0.97411 0.83866 0.90260 1.45872 1.65578 1.15210 1.09082 1.20192 0.76461 0.86051 0.84586 1.90690 1.51896 1.18391 1.85440 1.22296 1.04431 1.01952 0.93370 1.23018 0.89228 1.03608 1.01941 1.22998 1.01451 1.00382 0.94639 0.91682 0.90697 0.92261 0.89962 0.90096 0.87623 0.87494 0.91977 0.88853 0.89644 0.90193 0.91013 0.74841 0.83283 0.89347 0.85210 0.85890 0.89747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.03 71.98 0.65 -1.02 16 2 C -0.10 -1.60 2.46 -10.72 -0.03 -1.63 16 3 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 4 C 0.12 2.60 5.72 86.36 0.49 3.09 16 5 N -0.61 -16.42 2.98 -819.75 -2.44 -18.87 16 6 C 0.54 20.28 7.72 87.65 0.68 20.96 16 7 O -0.56 -26.14 15.27 -3.01 -0.05 -26.19 16 8 C -0.13 -5.08 4.50 71.23 0.32 -4.76 16 9 S -0.15 -8.33 20.57 -56.49 -1.16 -9.49 16 10 C -0.54 -31.20 9.50 67.95 0.65 -30.56 16 11 H 0.08 4.37 7.80 -2.91 -0.02 4.34 16 12 C 0.01 0.75 5.49 84.86 0.47 1.21 16 13 N -0.91 -56.00 13.22 21.65 0.29 -55.72 16 14 Si 1.00 43.75 29.55 68.60 2.03 45.78 16 15 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 16 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 17 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 18 C 0.11 2.25 6.31 86.22 0.54 2.80 16 19 C -0.14 -2.52 5.63 30.53 0.17 -2.35 16 20 C 0.16 2.58 1.88 45.02 0.08 2.67 16 21 H 0.08 1.56 7.58 -2.39 -0.02 1.54 16 22 N -0.71 -9.24 4.37 -442.43 -1.93 -11.17 16 23 C 0.54 9.20 7.58 87.66 0.66 9.87 16 24 O -0.58 -15.16 15.92 -3.01 -0.05 -15.20 16 25 C -0.20 -2.10 6.19 -11.54 -0.07 -2.17 16 26 C -0.14 -1.18 10.23 30.59 0.31 -0.86 16 27 C -0.16 -1.73 10.04 30.60 0.31 -1.42 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 0.67 7.37 -2.38 -0.02 0.66 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.08 2.17 7.00 -2.39 -0.02 2.15 16 33 H 0.11 3.92 7.95 -2.39 -0.02 3.90 16 34 H 0.11 3.92 7.68 -2.39 -0.02 3.91 16 35 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 36 H 0.09 2.01 5.94 -2.39 -0.01 2.00 16 37 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 40 H 0.41 3.24 8.31 -92.70 -0.77 2.47 16 41 H 0.15 0.78 8.14 -2.39 -0.02 0.77 16 42 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.08 1.35 7.67 -2.39 -0.02 1.33 16 Total: -1.00 -80.16 380.66 2.14 -78.01 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 0.22 Total: 17.03 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: 5.24 Total: -4.18 kcal Atomic # 7 Polarization: -81.67 SS G_CDS: -4.09 Total: -85.75 kcal Atomic # 8 Polarization: -41.30 SS G_CDS: -0.09 Total: -41.39 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: -8.33 SS G_CDS: -1.16 Total: -9.49 kcal Total: -80.16 2.14 -78.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073612004.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.468 kcal (2) G-P(sol) polarization free energy of solvation -80.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds