Wall clock time and date at job start Tue Mar 31 2020 14:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.52123 * 2 1 4 4 C 1.53187 * 109.49911 * 239.92247 * 2 1 3 5 5 N 1.46926 * 108.77701 * 185.41528 * 4 2 1 6 6 C 1.34774 * 120.62964 * 233.63064 * 5 4 2 7 7 O 1.21283 * 119.99964 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00169 * 179.97438 * 6 5 4 9 9 S 1.81003 * 109.47261 * 179.97438 * 8 6 5 10 10 C 1.76203 * 99.99734 * 179.97438 * 9 8 6 11 11 H 1.07992 * 119.99889 * 359.97438 * 10 9 8 12 12 C 1.38798 * 119.99530 * 179.97438 * 10 9 8 13 13 N 1.31626 * 120.00388 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99744 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.46942 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46814 * 120.00176 * 14 12 10 17 17 H 1.48500 * 109.47081 * 239.99885 * 14 12 10 18 18 C 1.46925 * 118.73912 * 53.60448 * 5 4 2 19 19 C 1.53196 * 108.77390 * 306.38989 * 18 5 4 20 20 C 1.53036 * 109.49688 * 120.07710 * 2 1 3 21 21 H 1.08995 * 109.46517 * 301.32673 * 20 2 1 22 22 N 1.46501 * 109.45894 * 61.30044 * 20 2 1 23 23 C 1.34778 * 120.00183 * 205.00155 * 22 20 2 24 24 O 1.21279 * 119.99711 * 359.97438 * 23 22 20 25 25 C 1.50701 * 119.99999 * 180.02562 * 23 22 20 26 26 C 1.53001 * 117.51956 * 111.28092 * 25 23 22 27 27 C 1.52999 * 60.00190 * 107.47765 * 26 25 23 28 28 H 1.09001 * 109.47264 * 299.91866 * 1 2 3 29 29 H 1.09003 * 109.47025 * 59.92271 * 1 2 3 30 30 H 1.09003 * 109.46895 * 179.91805 * 1 2 3 31 31 H 1.09011 * 109.58678 * 305.19895 * 4 2 1 32 32 H 1.08999 * 109.58984 * 65.47771 * 4 2 1 33 33 H 1.09003 * 109.46998 * 299.99939 * 8 6 5 34 34 H 1.09000 * 109.46800 * 59.99584 * 8 6 5 35 35 H 0.97004 * 120.00221 * 179.97438 * 13 12 10 36 36 H 1.08996 * 109.58720 * 66.17942 * 18 5 4 37 37 H 1.09001 * 109.58776 * 186.46739 * 18 5 4 38 38 H 1.09000 * 109.50153 * 294.68757 * 19 18 5 39 39 H 1.08997 * 109.49540 * 174.58635 * 19 18 5 40 40 H 0.97001 * 119.99895 * 24.99514 * 22 20 2 41 41 H 1.09002 * 115.55088 * 325.57701 * 25 23 22 42 42 H 1.09001 * 117.49733 * 214.97195 * 26 25 23 43 43 H 1.08995 * 117.49577 * 359.97438 * 26 25 23 44 44 H 1.09004 * 117.50150 * 252.51496 * 27 26 25 45 45 H 1.09004 * 117.49681 * 107.48417 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7237 -1.2496 5 7 3.5046 -0.8291 -1.1695 6 6 4.2812 -0.3855 -2.1778 7 8 3.7732 0.1059 -3.1634 8 6 5.7807 -0.5000 -2.0806 9 16 6.5360 0.1769 -3.5798 10 6 8.2390 -0.0774 -3.2059 11 1 8.5240 -0.5339 -2.2696 12 6 9.2142 0.3090 -4.1148 13 7 8.8669 0.8659 -5.2558 14 14 11.0197 0.0402 -3.7182 15 1 11.1435 -0.5981 -2.3831 16 1 11.6262 -0.8429 -4.7466 17 1 11.7247 1.3471 -3.7099 18 6 4.1053 -1.4266 0.0308 19 6 3.5709 -0.6949 1.2660 20 6 2.0408 -0.7230 1.2484 21 1 1.6583 -0.2243 2.1389 22 7 1.5784 -2.1130 1.2308 23 6 1.4502 -2.7952 2.3861 24 8 1.7181 -2.2585 3.4401 25 6 0.9750 -4.2252 2.3680 26 6 1.9841 -5.3103 2.7491 27 6 0.8524 -4.9460 3.7120 28 1 -0.3634 0.5126 0.8907 29 1 -0.3633 0.5150 -0.8893 30 1 -0.3633 -1.0277 -0.0015 31 1 1.6053 -1.7216 -1.2981 32 1 1.7616 -0.1592 -2.1390 33 1 6.1322 0.0577 -1.2126 34 1 6.0589 -1.5487 -1.9756 35 1 9.5485 1.1363 -5.8909 36 1 3.8375 -2.4817 0.0868 37 1 5.1898 -1.3267 -0.0149 38 1 3.9159 0.3390 1.2541 39 1 3.9334 -1.1896 2.1671 40 1 1.3644 -2.5423 0.3877 41 1 0.2422 -4.4675 1.5983 42 1 1.9152 -6.2664 2.2301 43 1 2.9921 -4.9900 3.0126 44 1 1.1157 -4.3858 4.6093 45 1 0.0388 -5.6623 3.8265 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073612005.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:44 Heat of formation + Delta-G solvation = -52.510045 kcal Electronic energy + Delta-G solvation = -25752.831826 eV Core-core repulsion = 22090.049956 eV Total energy + Delta-G solvation = -3662.781870 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.91307 -39.62694 -37.87934 -36.29753 -34.53768 -33.22117 -32.44595 -31.30182 -29.59635 -26.84074 -25.74127 -25.30672 -24.35826 -22.82701 -22.50266 -20.63188 -20.21678 -18.94125 -17.98356 -17.66842 -16.71882 -16.27801 -15.91398 -15.60858 -15.29078 -14.98342 -14.81968 -14.59172 -14.35013 -14.01645 -13.89045 -13.66429 -13.18695 -13.03543 -12.89006 -12.66783 -12.32471 -12.10589 -12.00274 -11.94343 -11.67436 -11.26320 -11.24306 -11.08316 -11.03424 -11.01776 -10.91026 -10.78429 -10.71624 -10.10570 -9.81160 -9.42107 -9.33747 -9.09032 -8.56181 -8.24376 -6.52189 -6.23425 -3.94107 2.20478 2.78768 2.89291 3.00592 3.20480 3.24817 3.30025 3.48563 3.56499 4.18365 4.23145 4.34327 4.41073 4.48521 4.53270 4.58811 4.73301 4.83364 4.86343 4.99656 5.11938 5.14164 5.21288 5.21751 5.28550 5.35687 5.46305 5.47582 5.54412 5.58671 5.65024 5.70236 5.73510 5.77687 5.83709 5.85461 5.91458 5.94702 6.09283 6.24001 6.57365 7.19471 7.49586 7.58421 7.94434 8.33772 8.51108 9.22143 10.84030 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.017445 B = 0.002715 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.653225 B =10312.443829 C =11326.742667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 H 0.092 0.908 4 C 0.117 3.883 5 N -0.620 5.620 6 C 0.536 3.464 7 O -0.516 6.516 8 C -0.151 4.151 9 S -0.062 6.062 10 C -0.534 4.534 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.111 3.889 19 C -0.147 4.147 20 C 0.152 3.848 21 H 0.091 0.909 22 N -0.718 5.718 23 C 0.544 3.456 24 O -0.541 6.541 25 C -0.197 4.197 26 C -0.152 4.152 27 C -0.148 4.148 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.268 0.732 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.400 0.600 41 H 0.122 0.878 42 H 0.104 0.896 43 H 0.100 0.900 44 H 0.108 0.892 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.018 -9.930 16.050 26.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.135 4.135 3 H 0.111 0.889 4 C -0.006 4.006 5 N -0.356 5.356 6 C 0.324 3.676 7 O -0.390 6.390 8 C -0.301 4.301 9 S 0.165 5.835 10 C -0.682 4.682 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.013 4.013 19 C -0.186 4.186 20 C 0.048 3.952 21 H 0.109 0.891 22 N -0.370 5.370 23 C 0.331 3.669 24 O -0.418 6.418 25 C -0.219 4.219 26 C -0.189 4.189 27 C -0.185 4.185 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.117 0.883 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.236 0.764 41 H 0.140 0.860 42 H 0.123 0.877 43 H 0.119 0.881 44 H 0.126 0.874 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -18.505 -8.716 15.149 25.454 hybrid contribution 1.648 -0.965 0.944 2.130 sum -16.857 -9.681 16.093 25.236 Atomic orbital electron populations 1.21750 0.93838 1.02119 1.02423 1.21821 0.96533 1.00882 0.94219 0.88938 1.21523 0.80237 1.00012 0.98808 1.48109 1.05947 1.62821 1.18756 1.20344 0.88863 0.76526 0.81842 1.90692 1.75018 1.42916 1.30395 1.23555 0.93663 1.05293 1.07598 1.85400 1.02322 1.79030 1.16738 1.22890 0.91149 1.47125 1.07058 0.90905 1.24994 0.99602 0.94540 0.94465 1.70025 1.34052 1.38425 1.07772 0.86118 0.82805 0.78101 0.78482 1.19602 1.20564 1.20552 1.21660 0.99227 0.96674 0.83722 1.22323 0.95388 1.02427 0.98504 1.20964 0.93805 0.81526 0.98915 0.89067 1.46063 1.68133 1.13781 1.09010 1.19649 0.76770 0.86885 0.83621 1.90699 1.50330 1.69928 1.30837 1.22213 1.05488 0.91434 1.02729 1.22948 0.95512 0.97739 1.02719 1.22947 1.00763 1.01681 0.93159 0.92185 0.91876 0.92529 0.92292 0.88338 0.89250 0.89313 0.92228 0.91655 0.89064 0.90124 0.90117 0.76417 0.85963 0.87725 0.88136 0.87410 0.87978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.05 37.16 0.34 -0.68 16 2 C -0.11 -1.00 2.67 -90.50 -0.24 -1.24 16 3 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 4 C 0.12 1.26 5.41 -3.71 -0.02 1.24 16 5 N -0.62 -8.21 2.97 -172.77 -0.51 -8.73 16 6 C 0.54 9.86 7.72 -10.99 -0.08 9.78 16 7 O -0.52 -11.44 15.28 5.56 0.08 -11.35 16 8 C -0.15 -3.01 4.50 36.01 0.16 -2.85 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.53 -15.10 9.50 30.94 0.29 -14.80 16 11 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 12 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 13 N -0.87 -26.04 13.22 55.49 0.73 -25.30 16 14 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 16 15 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 C 0.11 1.19 6.09 -3.71 -0.02 1.17 16 19 C -0.15 -1.44 5.77 -26.61 -0.15 -1.60 16 20 C 0.15 1.36 2.21 -67.89 -0.15 1.21 16 21 H 0.09 0.92 7.58 -51.93 -0.39 0.53 16 22 N -0.72 -5.62 3.60 -53.77 -0.19 -5.82 16 23 C 0.54 5.13 7.58 -10.98 -0.08 5.04 16 24 O -0.54 -7.11 15.92 5.56 0.09 -7.02 16 25 C -0.20 -1.35 6.19 -91.77 -0.57 -1.91 16 26 C -0.15 -0.94 10.24 -26.73 -0.27 -1.21 16 27 C -0.15 -0.98 10.04 -26.73 -0.27 -1.24 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.35 7.54 -51.93 -0.39 -0.04 16 31 H 0.06 0.51 6.64 -51.92 -0.34 0.16 16 32 H 0.10 1.26 7.01 -51.93 -0.36 0.89 16 33 H 0.09 1.67 7.70 -51.92 -0.40 1.27 16 34 H 0.09 1.65 7.94 -51.92 -0.41 1.24 16 35 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.07 0.63 7.74 -51.93 -0.40 0.23 16 37 H 0.09 1.04 5.93 -51.93 -0.31 0.73 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.40 2.53 6.73 -40.82 -0.27 2.25 16 41 H 0.12 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.11 0.88 7.67 -51.93 -0.40 0.48 16 45 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 376.76 15.07 5.68 5.68 Total: -1.00 -35.08 376.76 -9.56 -44.65 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -7.04 Total: 0.60 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -1.17 Total: -5.12 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.03 Total: -39.84 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: 0.17 Total: -18.38 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.08 -9.56 -44.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073612005.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.864 kcal (2) G-P(sol) polarization free energy of solvation -35.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds