Wall clock time and date at job start Tue Mar 31 2020 14:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.49508 * 2 1 4 4 C 1.53191 * 109.50161 * 120.06718 * 2 1 3 5 5 N 1.46920 * 108.77522 * 174.61820 * 4 2 1 6 6 C 1.34776 * 120.63236 * 126.37097 * 5 4 2 7 7 O 1.21281 * 119.99608 * 359.97438 * 6 5 4 8 8 C 1.50699 * 120.00426 * 180.02562 * 6 5 4 9 9 C 1.53000 * 117.50321 * 179.97438 * 8 6 5 10 10 C 1.52997 * 117.50247 * 111.36997 * 8 6 5 11 11 C 1.46929 * 118.73960 * 306.64249 * 5 4 2 12 12 C 1.52762 * 109.00776 * 53.30835 * 11 5 4 13 13 C 1.53037 * 109.38292 * 305.59015 * 12 11 5 14 14 H 1.09006 * 109.45662 * 181.26249 * 13 12 11 15 15 N 1.46499 * 109.46136 * 301.21652 * 13 12 11 16 16 C 1.34776 * 120.00103 * 275.07064 * 15 13 12 17 17 O 1.21274 * 120.00265 * 359.97438 * 16 15 13 18 18 C 1.50703 * 119.99814 * 179.97438 * 16 15 13 19 19 S 1.80996 * 109.47139 * 179.97438 * 18 16 15 20 20 C 1.76199 * 100.00092 * 180.02562 * 19 18 16 21 21 H 1.07999 * 119.99909 * 359.97438 * 20 19 18 22 22 C 1.38798 * 119.99795 * 180.02562 * 20 19 18 23 23 N 1.31627 * 119.99748 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00253 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.46867 * 90.00531 * 24 22 20 26 26 H 1.48502 * 109.47052 * 210.00086 * 24 22 20 27 27 H 1.48497 * 109.47275 * 330.00264 * 24 22 20 28 28 H 1.09001 * 109.46885 * 299.93019 * 1 2 3 29 29 H 1.08999 * 109.47706 * 59.92946 * 1 2 3 30 30 H 1.08998 * 109.47107 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.58643 * 54.82494 * 4 2 1 32 32 H 1.09003 * 109.58587 * 294.40482 * 4 2 1 33 33 H 1.09002 * 115.55636 * 325.68296 * 8 6 5 34 34 H 1.08990 * 117.49990 * 145.01584 * 9 8 6 35 35 H 1.09004 * 117.49237 * 359.97438 * 9 8 6 36 36 H 1.08999 * 117.49685 * 0.02562 * 10 8 6 37 37 H 1.08999 * 117.52022 * 214.97066 * 10 8 6 38 38 H 1.09001 * 109.58692 * 173.14748 * 11 5 4 39 39 H 1.09002 * 109.58250 * 293.56763 * 11 5 4 40 40 H 1.08993 * 109.56135 * 185.55279 * 12 11 5 41 41 H 1.08994 * 109.38374 * 65.51814 * 12 11 5 42 42 H 0.97001 * 119.99822 * 95.07131 * 15 13 12 43 43 H 1.09001 * 109.47089 * 299.99934 * 18 16 15 44 44 H 1.09002 * 109.47039 * 59.99986 * 18 16 15 45 45 H 0.97003 * 120.00324 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0414 -0.7235 1.2497 5 7 3.5047 -0.8281 1.1700 6 6 4.2809 -0.3842 2.1785 7 8 3.7724 0.1078 3.1636 8 6 5.7804 -0.4979 2.0816 9 6 6.6062 0.0246 3.2588 10 6 6.5797 0.7989 1.9400 11 6 4.1062 -1.4203 -0.0326 12 6 3.5714 -0.6941 -1.2656 13 6 2.0414 -0.7229 -1.2482 14 1 1.6587 -0.2246 -2.1390 15 7 1.5795 -2.1131 -1.2307 16 6 1.4520 -2.7955 -2.3860 17 8 1.7191 -2.2585 -3.4401 18 6 0.9775 -4.2257 -2.3678 19 16 0.9105 -4.8607 -4.0614 20 6 0.3416 -6.4993 -3.7516 21 1 0.1495 -6.8218 -2.7390 22 6 0.1413 -7.3759 -4.8090 23 7 -0.2842 -8.5998 -4.5776 24 14 0.4742 -6.8182 -6.5605 25 1 1.8874 -7.1088 -6.9123 26 1 -0.4269 -7.5446 -7.4909 27 1 0.2267 -5.3582 -6.6706 28 1 -0.3633 0.5128 0.8906 29 1 -0.3634 0.5149 -0.8893 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6057 -1.7214 1.2982 32 1 1.7634 -0.1577 2.1390 33 1 6.1523 -1.3781 1.5571 34 1 7.5212 -0.5120 3.5092 35 1 6.0647 0.4511 4.1033 36 1 6.0209 1.7345 1.9174 37 1 7.4776 0.7723 1.3226 38 1 5.1901 -1.3142 0.0108 39 1 3.8424 -2.4764 -0.0908 40 1 3.9344 -1.1887 -2.1665 41 1 3.9159 0.3399 -1.2542 42 1 1.3656 -2.5425 -0.3876 43 1 1.6680 -4.8302 -1.7798 44 1 -0.0165 -4.2731 -1.9228 45 1 -0.4238 -9.2126 -5.3164 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073744192.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:49 Heat of formation + Delta-G solvation = -51.407411 kcal Electronic energy + Delta-G solvation = -25758.994489 eV Core-core repulsion = 22096.260434 eV Total energy + Delta-G solvation = -3662.734056 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.01916 -39.65007 -37.93920 -36.38150 -34.69876 -33.07686 -32.46599 -31.62123 -29.08268 -27.59882 -25.94378 -25.59312 -23.73060 -22.81886 -22.77510 -21.06426 -19.95968 -18.84554 -18.10026 -17.81071 -16.59293 -16.41816 -16.18106 -15.60182 -15.31678 -15.03932 -14.87110 -14.71723 -14.33834 -14.25020 -13.68662 -13.66478 -13.46423 -13.14643 -12.82329 -12.78974 -12.43678 -12.30010 -12.06425 -11.94745 -11.86033 -11.34251 -11.29358 -11.26190 -11.03680 -10.99108 -10.89836 -10.82101 -10.59312 -10.07439 -9.88559 -9.56397 -9.12626 -9.02858 -8.89304 -8.53622 -6.95053 -6.31565 -4.03600 2.15770 2.57039 2.72920 2.91654 3.27248 3.31275 3.46668 3.47644 3.62080 4.04385 4.28521 4.30263 4.35823 4.45756 4.49405 4.51489 4.68266 4.69808 4.76288 4.86111 4.99347 5.07471 5.09255 5.19392 5.24009 5.27440 5.34491 5.40430 5.44948 5.53448 5.53937 5.67907 5.71556 5.72345 5.73004 5.82315 5.83814 5.95560 5.97264 6.19361 6.50866 7.03893 7.54394 7.85250 7.91420 8.38987 8.43843 9.14499 10.77682 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.020800 B = 0.002614 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.855111 B =10710.602125 C =11111.910934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 H 0.087 0.913 4 C 0.114 3.886 5 N -0.607 5.607 6 C 0.547 3.453 7 O -0.544 6.544 8 C -0.197 4.197 9 C -0.148 4.148 10 C -0.151 4.151 11 C 0.107 3.893 12 C -0.147 4.147 13 C 0.152 3.848 14 H 0.093 0.907 15 N -0.731 5.731 16 C 0.533 3.467 17 O -0.518 6.518 18 C -0.125 4.125 19 S -0.141 6.141 20 C -0.522 4.522 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.126 0.874 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.397 0.603 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.554 19.097 13.758 25.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.131 4.131 3 H 0.106 0.894 4 C -0.009 4.009 5 N -0.339 5.339 6 C 0.335 3.665 7 O -0.422 6.422 8 C -0.218 4.218 9 C -0.185 4.185 10 C -0.189 4.189 11 C -0.015 4.015 12 C -0.186 4.186 13 C 0.047 3.953 14 H 0.111 0.889 15 N -0.386 5.386 16 C 0.319 3.681 17 O -0.392 6.392 18 C -0.276 4.276 19 S 0.086 5.914 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.115 0.885 33 H 0.144 0.856 34 H 0.121 0.879 35 H 0.125 0.875 36 H 0.117 0.883 37 H 0.123 0.877 38 H 0.107 0.893 39 H 0.092 0.908 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.232 0.768 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.660 20.062 12.446 25.904 hybrid contribution -0.354 -1.125 0.680 1.362 sum 10.306 18.937 13.126 25.241 Atomic orbital electron populations 1.21762 0.93456 1.02788 1.02364 1.21774 0.96955 1.00260 0.94085 0.89447 1.21676 0.79150 1.00935 0.99111 1.48028 1.06619 1.61049 1.18250 1.19671 0.87858 0.76864 0.82062 1.90681 1.75197 1.45086 1.31225 1.22228 0.91091 1.01098 1.07385 1.22956 1.00764 1.02439 0.92385 1.22926 1.01186 0.93985 1.00762 1.21712 0.98507 0.97706 0.83597 1.22240 0.96205 1.01717 0.98437 1.20868 0.93204 0.82586 0.98656 0.88858 1.46109 1.70019 1.13223 1.09227 1.20267 0.76639 0.87828 0.83396 1.90696 1.48453 1.69694 1.30363 1.23286 1.04587 0.94544 1.05158 1.84777 1.88269 1.14734 1.03653 1.22313 1.51574 0.95044 0.97999 0.89418 1.24720 0.93340 0.93994 0.99290 1.69938 1.43841 1.05061 1.32821 0.86732 0.79298 0.81695 0.84086 1.19225 1.19953 1.15928 0.92189 0.91828 0.91961 0.91379 0.88540 0.85637 0.87854 0.87452 0.88301 0.87677 0.89343 0.90814 0.89410 0.90649 0.76816 0.88629 0.88548 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.06 37.16 0.34 -0.79 16 2 C -0.11 -0.89 2.67 -90.50 -0.24 -1.13 16 3 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 4 C 0.11 0.97 5.42 -3.71 -0.02 0.95 16 5 N -0.61 -5.43 2.98 -173.03 -0.52 -5.94 16 6 C 0.55 5.70 7.48 -10.99 -0.08 5.61 16 7 O -0.54 -7.50 15.67 5.56 0.09 -7.41 16 8 C -0.20 -1.50 4.96 -91.77 -0.45 -1.96 16 9 C -0.15 -1.03 10.04 -26.75 -0.27 -1.30 16 10 C -0.15 -0.95 10.23 -26.75 -0.27 -1.23 16 11 C 0.11 0.85 6.01 -3.93 -0.02 0.83 16 12 C -0.15 -1.30 5.75 -26.83 -0.15 -1.46 16 13 C 0.15 1.49 2.21 -67.89 -0.15 1.34 16 14 H 0.09 1.09 7.58 -51.93 -0.39 0.70 16 15 N -0.73 -8.14 3.60 -53.77 -0.19 -8.33 16 16 C 0.53 8.57 7.81 -10.98 -0.09 8.48 16 17 O -0.52 -10.24 15.52 5.56 0.09 -10.15 16 18 C -0.13 -2.28 6.16 36.01 0.22 -2.06 16 19 S -0.14 -3.45 18.55 -107.50 -1.99 -5.44 16 20 C -0.52 -14.75 10.04 30.94 0.31 -14.44 16 21 H 0.09 2.59 8.03 -52.49 -0.42 2.17 16 22 C 0.10 2.75 5.50 -17.43 -0.10 2.65 16 23 N -0.88 -26.29 13.97 55.49 0.78 -25.52 16 24 Si 0.86 21.47 27.74 -169.99 -4.71 16.75 16 25 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.24 -5.87 6.74 56.52 0.38 -5.49 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.51 7.54 -51.93 -0.39 0.12 16 31 H 0.07 0.54 6.64 -51.93 -0.34 0.19 16 32 H 0.10 0.94 7.00 -51.93 -0.36 0.57 16 33 H 0.13 0.76 6.83 -51.93 -0.35 0.41 16 34 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.11 0.91 7.67 -51.93 -0.40 0.51 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.09 0.57 5.68 -51.93 -0.29 0.27 16 39 H 0.07 0.63 7.74 -51.93 -0.40 0.23 16 40 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.40 3.66 6.73 -40.82 -0.27 3.39 16 43 H 0.10 1.62 8.14 -51.92 -0.42 1.20 16 44 H 0.10 1.65 8.14 -51.91 -0.42 1.23 16 45 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 373.49 15.07 5.63 5.63 Total: -1.00 -34.36 373.49 -8.85 -43.20 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -7.02 Total: 1.71 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -0.98 Total: -4.49 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.07 Total: -39.79 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: 0.17 Total: -17.56 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.71 Total: 16.75 kcal Atomic # 16 Polarization: -3.45 SS G_CDS: -1.99 Total: -5.44 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.36 -8.85 -43.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073744192.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.206 kcal (2) G-P(sol) polarization free energy of solvation -34.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds