Wall clock time and date at job start Tue Mar 31 2020 14:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.58484 * 2 1 4 4 C 1.53194 * 109.70476 * 120.35632 * 2 1 3 5 5 C 1.53039 * 109.31396 * 174.49360 * 4 2 1 6 6 H 1.08998 * 109.46089 * 178.62659 * 5 4 2 7 7 N 1.46505 * 109.46022 * 58.65286 * 5 4 2 8 8 C 1.34782 * 119.99805 * 155.00210 * 7 5 4 9 9 O 1.21275 * 120.00002 * 359.97438 * 8 7 5 10 10 C 1.50696 * 119.99489 * 180.02562 * 8 7 5 11 11 C 1.53005 * 117.49809 * 248.74058 * 10 8 7 12 12 C 1.53009 * 117.49449 * 180.08551 * 10 8 7 13 13 C 1.53041 * 109.53709 * 298.63676 * 5 4 2 14 14 C 1.52762 * 109.38637 * 61.23794 * 13 5 4 15 15 N 1.46923 * 109.00725 * 305.58850 * 14 13 5 16 16 C 1.34775 * 120.63180 * 233.58122 * 15 14 13 17 17 O 1.21281 * 119.99979 * 174.65614 * 16 15 14 18 18 C 1.50694 * 120.00182 * 354.92993 * 16 15 14 19 19 S 1.80999 * 109.47522 * 179.97438 * 18 16 15 20 20 C 1.76195 * 100.00055 * 180.02562 * 19 18 16 21 21 H 1.07997 * 120.00281 * 359.97438 * 20 19 18 22 22 C 1.38803 * 119.99815 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00273 * 359.97438 * 22 20 19 24 24 Si 1.86809 * 119.99879 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47028 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47002 * 119.99442 * 24 22 20 27 27 H 1.48492 * 109.47064 * 239.99603 * 24 22 20 28 28 H 1.09002 * 109.47200 * 176.10914 * 1 2 3 29 29 H 1.08999 * 109.47034 * 296.10522 * 1 2 3 30 30 H 1.09000 * 109.47280 * 56.10920 * 1 2 3 31 31 H 1.08997 * 109.49882 * 294.44265 * 4 2 1 32 32 H 1.08999 * 109.49912 * 54.51213 * 4 2 1 33 33 H 0.97001 * 119.99960 * 335.00136 * 7 5 4 34 34 H 1.08996 * 115.55504 * 34.41686 * 10 8 7 35 35 H 1.08999 * 117.49756 * 0.02562 * 11 10 8 36 36 H 1.08998 * 117.49491 * 145.02113 * 11 10 8 37 37 H 1.08997 * 117.49551 * 214.97826 * 12 10 8 38 38 H 1.08995 * 117.49852 * 0.02562 * 12 10 8 39 39 H 1.08999 * 109.49701 * 181.31694 * 13 5 4 40 40 H 1.08998 * 109.49833 * 301.38112 * 13 5 4 41 41 H 1.09001 * 109.51336 * 185.70717 * 14 13 5 42 42 H 1.08999 * 109.43122 * 65.42398 * 14 13 5 43 43 H 1.08996 * 109.47318 * 300.00298 * 18 16 15 44 44 H 1.09008 * 109.46904 * 60.00201 * 18 16 15 45 45 H 0.96991 * 119.99856 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0465 -0.7289 1.2445 5 6 3.5706 -0.8443 1.1674 6 1 3.9429 -1.3410 2.0634 7 7 4.1573 0.4947 1.0720 8 6 5.4215 0.7077 1.4880 9 8 6.0732 -0.2090 1.9416 10 6 6.0247 2.0852 1.3904 11 6 7.1537 2.2920 0.3786 12 6 7.4645 2.2620 1.8771 13 6 3.9602 -1.6607 -0.0671 14 6 3.4647 -0.9474 -1.3238 15 7 2.0225 -0.6981 -1.1954 16 6 1.1670 -1.1068 -2.1532 17 8 -0.0285 -0.9823 -1.9918 18 6 1.6957 -1.7242 -3.4222 19 16 0.3109 -2.1660 -4.5007 20 6 1.1919 -2.8456 -5.8669 21 1 2.2710 -2.8853 -5.8478 22 6 0.4990 -3.3290 -6.9682 23 7 -0.8161 -3.2802 -6.9918 24 14 1.4331 -4.0489 -8.4170 25 1 2.8918 -3.9876 -8.1453 26 1 1.0252 -5.4629 -8.6156 27 1 1.1249 -3.2681 -9.6419 28 1 -0.3634 -1.0253 -0.0697 29 1 -0.3633 0.4522 0.9228 30 1 -0.3634 0.5730 -0.8531 31 1 1.7689 -0.1673 2.1365 32 1 1.6076 -1.7255 1.2908 33 1 3.6359 1.2280 0.7096 34 1 5.3342 2.9133 1.5502 35 1 7.4597 1.4318 -0.2167 36 1 7.2060 3.2562 -0.1270 37 1 7.7212 3.2065 2.3568 38 1 7.9754 1.3818 2.2675 39 1 5.0446 -1.7623 -0.1086 40 1 3.5041 -2.6489 -0.0085 41 1 3.6509 -1.5745 -2.1957 42 1 3.9911 0.0007 -1.4339 43 1 2.3406 -1.0092 -3.9329 44 1 2.2671 -2.6202 -3.1796 45 1 -1.3002 -3.6183 -7.7613 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074752530.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:49 Heat of formation + Delta-G solvation = -35.763700 kcal Electronic energy + Delta-G solvation = -25873.641226 eV Core-core repulsion = 22211.585532 eV Total energy + Delta-G solvation = -3662.055694 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.92612 -39.82247 -37.69674 -36.27997 -34.41768 -33.23269 -32.44563 -31.45927 -29.06041 -27.37249 -25.49560 -25.29088 -24.23556 -22.81709 -22.34134 -20.92533 -20.33516 -18.84276 -17.89189 -17.60266 -16.46441 -16.36570 -15.98546 -15.61678 -15.36517 -14.98865 -14.82010 -14.65905 -14.17469 -13.98237 -13.71097 -13.57196 -13.10919 -12.93979 -12.71353 -12.59272 -12.28220 -12.23653 -11.94746 -11.74192 -11.67448 -11.20948 -11.17902 -11.08234 -11.03438 -10.99257 -10.91637 -10.82711 -10.76650 -10.11416 -9.80806 -9.38163 -9.08980 -8.72155 -8.46915 -8.24179 -6.51749 -6.23590 -3.93922 2.19941 2.78228 2.88981 3.01995 3.20279 3.24568 3.29777 3.48342 3.56627 4.18569 4.27024 4.38631 4.43926 4.48663 4.54378 4.67725 4.73491 4.85144 4.89960 5.03498 5.11847 5.17991 5.21783 5.22539 5.35749 5.48454 5.53765 5.55299 5.56859 5.67147 5.72907 5.74251 5.76901 5.82765 5.85919 5.87917 6.10784 6.22387 6.24293 6.46865 6.79829 7.18899 7.54399 7.58509 7.93717 8.33715 8.56165 9.22124 10.83864 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016813 B = 0.002799 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.951777 B = 9999.385810 C =11071.816088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.147 3.853 3 H 0.062 0.938 4 C -0.140 4.140 5 C 0.147 3.853 6 H 0.091 0.909 7 N -0.720 5.720 8 C 0.544 3.456 9 O -0.541 6.541 10 C -0.198 4.198 11 C -0.152 4.152 12 C -0.148 4.148 13 C -0.147 4.147 14 C 0.111 3.889 15 N -0.617 5.617 16 C 0.536 3.464 17 O -0.507 6.507 18 C -0.153 4.153 19 S -0.061 6.061 20 C -0.534 4.534 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.076 0.924 29 H 0.038 0.962 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.401 0.599 34 H 0.123 0.877 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.064 0.936 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.036 11.375 18.262 25.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.043 3.957 3 H 0.080 0.920 4 C -0.179 4.179 5 C 0.043 3.957 6 H 0.109 0.891 7 N -0.372 5.372 8 C 0.331 3.669 9 O -0.418 6.418 10 C -0.219 4.219 11 C -0.189 4.189 12 C -0.185 4.185 13 C -0.186 4.186 14 C -0.012 4.012 15 N -0.354 5.354 16 C 0.324 3.676 17 O -0.382 6.382 18 C -0.303 4.303 19 S 0.166 5.834 20 C -0.682 4.682 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.095 0.905 29 H 0.057 0.943 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.236 0.764 34 H 0.141 0.859 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.126 0.874 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.109 0.891 42 H 0.083 0.917 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.539 10.849 18.719 24.521 hybrid contribution 1.770 -0.229 -1.324 2.222 sum 13.309 10.621 17.395 24.342 Atomic orbital electron populations 1.22227 0.91949 1.04593 1.00657 1.21143 0.96425 0.94222 0.83883 0.91994 1.22339 0.93886 1.03180 0.98468 1.20939 0.92826 0.82896 0.99063 0.89101 1.46105 1.14413 1.12025 1.64689 1.19667 0.81405 0.89171 0.76704 1.90697 1.60956 1.44778 1.45355 1.22217 0.93603 0.96490 1.09565 1.22962 0.99306 1.03920 0.92735 1.22959 0.94716 1.04069 0.96805 1.22237 1.02117 0.99686 0.94560 1.21560 0.80463 1.00489 0.98718 1.48157 1.07069 1.59596 1.20584 1.20284 0.86269 0.77187 0.83854 1.90751 1.15317 1.53704 1.78399 1.23614 1.06456 1.02851 0.97421 1.85354 1.05172 1.78841 1.14058 1.22891 0.94999 1.46613 1.03715 0.90951 1.24992 0.95026 0.95402 0.98172 1.70022 1.06028 1.43889 1.30344 0.86125 0.79606 0.78707 0.81116 1.19613 1.20557 1.20569 0.90482 0.94287 0.90541 0.90196 0.89499 0.76398 0.85924 0.88133 0.87708 0.87956 0.87407 0.90157 0.90153 0.89091 0.91738 0.89447 0.89435 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 7.60 37.16 0.28 -1.49 16 2 C 0.15 1.58 3.19 -67.60 -0.22 1.37 16 3 H 0.06 0.56 6.64 -51.93 -0.34 0.21 16 4 C -0.14 -1.23 5.08 -26.61 -0.14 -1.37 16 5 C 0.15 1.33 2.78 -67.89 -0.19 1.14 16 6 H 0.09 0.92 7.58 -51.93 -0.39 0.52 16 7 N -0.72 -5.79 4.27 -53.76 -0.23 -6.02 16 8 C 0.54 5.23 7.58 -10.99 -0.08 5.15 16 9 O -0.54 -7.20 15.92 5.56 0.09 -7.12 16 10 C -0.20 -1.37 6.19 -91.77 -0.57 -1.94 16 11 C -0.15 -0.95 10.24 -26.69 -0.27 -1.23 16 12 C -0.15 -0.99 10.05 -26.69 -0.27 -1.26 16 13 C -0.15 -1.45 5.75 -26.83 -0.15 -1.60 16 14 C 0.11 1.20 6.05 -3.93 -0.02 1.18 16 15 N -0.62 -8.07 2.98 -165.49 -0.49 -8.56 16 16 C 0.54 9.57 7.62 -10.99 -0.08 9.49 16 17 O -0.51 -10.55 11.26 5.56 0.06 -10.48 16 18 C -0.15 -3.02 4.56 36.00 0.16 -2.86 16 19 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 20 C -0.53 -15.05 9.50 30.94 0.29 -14.75 16 21 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -25.96 13.22 55.49 0.73 -25.22 16 24 Si 0.92 21.29 29.55 -169.99 -5.02 16.26 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 28 H 0.08 1.19 6.73 -51.93 -0.35 0.84 16 29 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 1.18 6.76 -51.93 -0.35 0.83 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.40 2.58 6.87 -40.82 -0.28 2.30 16 34 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.11 0.89 7.67 -51.93 -0.40 0.49 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.09 1.04 5.96 -51.93 -0.31 0.73 16 42 H 0.06 0.62 7.74 -51.93 -0.40 0.22 16 43 H 0.09 1.62 8.11 -51.92 -0.42 1.20 16 44 H 0.09 1.63 7.48 -51.91 -0.39 1.24 16 45 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 371.70 15.07 5.60 5.60 Total: -1.00 -34.25 371.70 -9.81 -44.05 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -6.99 Total: 1.52 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -1.35 Total: -6.20 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.01 Total: -39.80 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: 0.15 Total: -17.60 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.25 -9.81 -44.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074752530.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.290 kcal (2) G-P(sol) polarization free energy of solvation -34.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds