Wall clock time and date at job start Tue Mar 31 2020 14:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.58850 * 2 1 4 4 C 1.53190 * 109.58397 * 120.28164 * 2 1 3 5 5 C 1.53038 * 109.31044 * 174.41675 * 4 2 1 6 6 H 1.09006 * 109.45067 * 58.65493 * 5 4 2 7 7 N 1.46500 * 109.46060 * 178.61338 * 5 4 2 8 8 C 1.34779 * 120.00028 * 205.06876 * 7 5 4 9 9 O 1.21270 * 120.00089 * 0.02562 * 8 7 5 10 10 C 1.50706 * 119.99465 * 180.02562 * 8 7 5 11 11 C 1.52996 * 117.49943 * 248.74471 * 10 8 7 12 12 C 1.53004 * 117.49199 * 180.09004 * 10 8 7 13 13 C 1.53036 * 109.54166 * 298.63854 * 5 4 2 14 14 C 1.53186 * 109.31249 * 61.36489 * 13 5 4 15 15 N 1.46927 * 108.89520 * 305.29212 * 14 13 5 16 16 C 1.34773 * 120.63420 * 233.68039 * 15 14 13 17 17 O 1.21284 * 120.00153 * 185.68406 * 16 15 14 18 18 C 1.50707 * 119.99887 * 5.69487 * 16 15 14 19 19 S 1.80998 * 109.47061 * 179.97438 * 18 16 15 20 20 C 1.76197 * 99.99957 * 179.97438 * 19 18 16 21 21 H 1.08000 * 120.00041 * 359.97438 * 20 19 18 22 22 C 1.38802 * 120.00088 * 180.02562 * 20 19 18 23 23 N 1.31626 * 119.99790 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99996 * 180.02562 * 22 20 19 25 25 H 1.48491 * 109.47530 * 59.99428 * 24 22 20 26 26 H 1.48493 * 109.46890 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46606 * 299.99385 * 24 22 20 28 28 H 1.09004 * 109.47259 * 294.20523 * 1 2 3 29 29 H 1.09004 * 109.47004 * 54.20188 * 1 2 3 30 30 H 1.08999 * 109.47231 * 174.20560 * 1 2 3 31 31 H 1.09002 * 109.49586 * 54.47211 * 4 2 1 32 32 H 1.08995 * 109.49973 * 294.37356 * 4 2 1 33 33 H 0.97004 * 119.99911 * 25.07673 * 7 5 4 34 34 H 1.08999 * 115.55023 * 34.42635 * 10 8 7 35 35 H 1.09008 * 117.49945 * 0.02562 * 11 10 8 36 36 H 1.09000 * 117.49903 * 145.02523 * 11 10 8 37 37 H 1.09009 * 117.49645 * 214.98007 * 12 10 8 38 38 H 1.08994 * 117.50314 * 0.02562 * 12 10 8 39 39 H 1.08993 * 109.49898 * 301.41140 * 13 5 4 40 40 H 1.09006 * 109.49664 * 181.31693 * 13 5 4 41 41 H 1.09007 * 109.59083 * 65.15009 * 14 13 5 42 42 H 1.09002 * 109.59007 * 185.43373 * 14 13 5 43 43 H 1.09004 * 109.46708 * 299.99593 * 18 16 15 44 44 H 1.08994 * 109.47151 * 59.99511 * 18 16 15 45 45 H 0.97003 * 119.99844 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 3.5674 -0.8466 1.1712 6 1 4.0060 0.1487 1.0990 7 7 4.0651 -1.5128 2.3773 8 6 5.3290 -1.2977 2.7931 9 8 6.0540 -0.5523 2.1692 10 6 5.8410 -1.9835 4.0336 11 6 6.1203 -1.1110 5.2589 12 6 7.2837 -1.6966 4.4548 13 6 3.9568 -1.6659 -0.0614 14 6 3.4650 -0.9487 -1.3225 15 7 2.0221 -0.7013 -1.1971 16 6 1.1692 -1.1108 -2.1568 17 8 -0.0044 -0.8114 -2.0932 18 6 1.6736 -1.9410 -3.3090 19 16 0.2986 -2.3300 -4.4199 20 6 1.1484 -3.2772 -5.6386 21 1 2.2100 -3.4517 -5.5435 22 6 0.4537 -3.7982 -6.7214 23 7 -0.8400 -3.5852 -6.8376 24 14 1.3546 -4.8030 -8.0131 25 1 1.9688 -5.9943 -7.3740 26 1 0.3943 -5.2418 -9.0573 27 1 2.4167 -3.9718 -8.6346 28 1 -0.3634 0.4214 0.9373 29 1 -0.3633 0.6011 -0.8336 30 1 -0.3634 -1.0224 -0.1038 31 1 1.6029 -1.7237 1.2935 32 1 1.7660 -0.1641 2.1370 33 1 3.4850 -2.1088 2.8765 34 1 5.4560 -2.9882 4.2081 35 1 5.9333 -0.0410 5.1681 36 1 5.9194 -1.5418 6.2398 37 1 7.8477 -2.5125 4.9070 38 1 7.8622 -1.0116 3.8350 39 1 3.4982 -2.6528 -0.0019 40 1 5.0411 -1.7699 -0.1014 41 1 3.9903 0.0002 -1.4317 42 1 3.6540 -1.5735 -2.1954 43 1 2.4344 -1.3820 -3.8539 44 1 2.1057 -2.8664 -2.9283 45 1 -1.3254 -3.9490 -7.5945 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074752531.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:52 Heat of formation + Delta-G solvation = -40.137566 kcal Electronic energy + Delta-G solvation = -25426.663773 eV Core-core repulsion = 21764.418415 eV Total energy + Delta-G solvation = -3662.245359 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.71674 -39.89801 -37.61067 -36.33853 -34.73681 -33.19213 -32.43153 -31.38611 -28.99500 -27.34618 -25.49283 -25.43055 -23.69748 -22.86235 -22.27594 -21.07627 -20.43145 -19.00570 -17.82208 -17.58161 -16.63927 -16.23276 -16.03085 -15.68464 -15.25653 -15.01687 -14.80658 -14.54643 -14.31102 -14.04178 -13.73335 -13.44236 -13.09301 -12.95726 -12.61401 -12.46941 -12.30300 -12.08478 -11.99012 -11.80787 -11.70475 -11.26725 -11.11079 -11.06849 -11.04648 -11.02876 -10.97455 -10.81149 -10.76276 -10.15827 -9.81249 -9.36973 -9.06111 -8.75221 -8.48562 -8.23240 -6.50148 -6.21821 -3.92266 2.16226 2.72859 2.90106 3.07020 3.23315 3.25341 3.28803 3.43128 3.58242 4.20245 4.23501 4.35117 4.41730 4.43794 4.54691 4.71882 4.73738 4.87768 4.94824 5.09772 5.13286 5.14696 5.22339 5.26210 5.32524 5.44140 5.49170 5.53110 5.57792 5.61167 5.69428 5.74424 5.79320 5.85771 5.87670 5.96743 6.12495 6.17665 6.26646 6.48494 6.81433 7.16903 7.57560 7.59643 7.91032 8.34778 8.58869 9.23478 10.85490 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.019048 B = 0.002492 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.627649 B =11231.122363 C =12355.842251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.152 3.848 3 H 0.070 0.930 4 C -0.138 4.138 5 C 0.146 3.854 6 H 0.090 0.910 7 N -0.722 5.722 8 C 0.543 3.457 9 O -0.539 6.539 10 C -0.197 4.197 11 C -0.153 4.153 12 C -0.148 4.148 13 C -0.144 4.144 14 C 0.111 3.889 15 N -0.619 5.619 16 C 0.537 3.463 17 O -0.508 6.508 18 C -0.153 4.153 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.071 0.929 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.041 0.959 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.401 0.599 34 H 0.124 0.876 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.360 4.230 24.085 27.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.048 3.952 3 H 0.088 0.912 4 C -0.177 4.177 5 C 0.042 3.958 6 H 0.108 0.892 7 N -0.372 5.372 8 C 0.329 3.671 9 O -0.416 6.416 10 C -0.218 4.218 11 C -0.191 4.191 12 C -0.185 4.185 13 C -0.184 4.184 14 C -0.013 4.013 15 N -0.356 5.356 16 C 0.325 3.675 17 O -0.383 6.383 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.744 3.256 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.059 0.941 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.235 0.765 34 H 0.142 0.858 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.127 0.873 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.112 0.888 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.951 5.190 23.601 26.531 hybrid contribution 1.756 -1.505 -0.648 2.402 sum 12.707 3.685 22.953 26.493 Atomic orbital electron populations 1.22206 0.92026 1.04347 1.01027 1.21147 0.96257 0.94753 0.83047 0.91176 1.22321 0.93875 1.02543 0.98936 1.20985 0.93946 0.97139 0.83748 0.89226 1.46037 1.13531 1.49145 1.28523 1.19678 0.81536 0.80969 0.84868 1.90705 1.56358 1.37487 1.57043 1.22225 1.02608 1.01464 0.95507 1.22952 1.02447 0.99477 0.94194 1.22971 0.89717 1.03574 1.02256 1.22321 1.02029 0.99830 0.94214 1.21663 0.80504 1.00721 0.98375 1.48268 1.07081 1.59458 1.20820 1.20272 0.85798 0.79081 0.82359 1.90733 1.16837 1.55088 1.75604 1.23614 1.06516 1.01297 0.98937 1.85346 1.07877 1.68101 1.22026 1.22818 0.97049 1.38359 1.10142 0.91040 1.24985 0.94976 0.96078 0.97511 1.70006 1.06991 1.43141 1.30152 0.86234 0.79186 0.79974 0.80180 1.19962 1.20812 1.19924 0.94066 0.89799 0.91286 0.90651 0.90213 0.76474 0.85843 0.88244 0.87760 0.87881 0.87345 0.91003 0.90225 0.91188 0.88798 0.89395 0.89419 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 7.61 37.16 0.28 -1.57 16 2 C 0.15 1.77 3.50 -67.45 -0.24 1.54 16 3 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 4 C -0.14 -1.23 4.84 -26.61 -0.13 -1.36 16 5 C 0.15 1.35 2.42 -67.89 -0.16 1.18 16 6 H 0.09 0.96 7.58 -51.93 -0.39 0.56 16 7 N -0.72 -5.66 5.08 -53.77 -0.27 -5.94 16 8 C 0.54 5.19 7.58 -10.98 -0.08 5.11 16 9 O -0.54 -7.24 15.92 5.57 0.09 -7.15 16 10 C -0.20 -1.30 6.19 -91.77 -0.57 -1.87 16 11 C -0.15 -0.85 10.24 -26.70 -0.27 -1.12 16 12 C -0.15 -0.95 10.05 -26.69 -0.27 -1.22 16 13 C -0.14 -1.46 5.65 -26.62 -0.15 -1.61 16 14 C 0.11 1.27 6.34 -3.71 -0.02 1.25 16 15 N -0.62 -8.57 2.98 -165.01 -0.49 -9.06 16 16 C 0.54 9.85 7.52 -10.98 -0.08 9.77 16 17 O -0.51 -10.81 11.47 5.55 0.06 -10.75 16 18 C -0.15 -3.08 4.51 36.01 0.16 -2.91 16 19 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 20 C -0.54 -15.19 9.50 30.94 0.29 -14.90 16 21 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.08 13.22 55.49 0.73 -25.35 16 24 Si 0.92 21.40 29.55 -169.99 -5.02 16.37 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 27 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 28 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 1.34 6.58 -51.93 -0.34 1.00 16 30 H 0.07 1.08 6.94 -51.93 -0.36 0.71 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.40 2.17 8.60 -40.82 -0.35 1.82 16 34 H 0.12 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.10 0.62 8.14 -51.92 -0.42 0.20 16 36 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.10 0.47 8.14 -51.92 -0.42 0.05 16 38 H 0.11 0.88 7.67 -51.93 -0.40 0.48 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.09 1.10 5.93 -51.93 -0.31 0.79 16 43 H 0.09 1.66 7.71 -51.91 -0.40 1.26 16 44 H 0.09 1.65 7.93 -51.92 -0.41 1.24 16 45 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 376.16 15.07 5.67 5.67 Total: -1.00 -34.77 376.16 -9.94 -44.71 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -7.16 Total: 1.04 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -1.33 Total: -5.71 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: -0.03 Total: -40.34 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: 0.15 Total: -17.90 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.77 -9.94 -44.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074752531.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.572 kcal (2) G-P(sol) polarization free energy of solvation -34.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds