Wall clock time and date at job start Tue Mar 31 2020 14:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.70452 * 2 1 4 4 C 1.53194 * 109.58361 * 239.64961 * 2 1 3 5 5 C 1.53109 * 109.33021 * 294.84420 * 4 2 1 6 6 H 1.09003 * 109.44365 * 58.65544 * 5 4 2 7 7 N 1.46501 * 109.50227 * 178.62722 * 5 4 2 8 8 C 1.34777 * 119.99978 * 205.05354 * 7 5 4 9 9 O 1.21277 * 119.99904 * 0.02562 * 8 7 5 10 10 C 1.50697 * 119.99831 * 180.02562 * 8 7 5 11 11 C 1.53004 * 117.49446 * 248.74314 * 10 8 7 12 12 C 1.53002 * 117.49595 * 180.08967 * 10 8 7 13 13 C 1.53036 * 109.50477 * 298.65929 * 5 4 2 14 14 C 1.53187 * 109.33909 * 61.34678 * 13 5 4 15 15 N 1.46925 * 109.59020 * 120.35861 * 2 1 3 16 16 C 1.34772 * 120.63360 * 246.15427 * 15 2 1 17 17 O 1.21277 * 119.99811 * 0.02562 * 16 15 2 18 18 C 1.50704 * 120.00006 * 180.02562 * 16 15 2 19 19 S 1.80999 * 109.47111 * 180.02562 * 18 16 15 20 20 C 1.76197 * 100.00038 * 180.02562 * 19 18 16 21 21 H 1.07997 * 119.99779 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99856 * 180.02562 * 20 19 18 23 23 N 1.31632 * 119.99890 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99781 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47425 * 60.00101 * 24 22 20 26 26 H 1.48505 * 109.47019 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.47409 * 299.99831 * 24 22 20 28 28 H 1.09001 * 109.46844 * 299.64072 * 1 2 3 29 29 H 1.08998 * 109.47199 * 59.63538 * 1 2 3 30 30 H 1.08999 * 109.47095 * 179.64146 * 1 2 3 31 31 H 1.09002 * 109.49873 * 54.79750 * 4 2 1 32 32 H 1.08999 * 109.49823 * 174.86518 * 4 2 1 33 33 H 0.96998 * 120.00039 * 25.06422 * 7 5 4 34 34 H 1.09000 * 115.55257 * 34.41503 * 10 8 7 35 35 H 1.08991 * 117.49982 * 0.02562 * 11 10 8 36 36 H 1.09002 * 117.49594 * 145.02383 * 11 10 8 37 37 H 1.08999 * 117.49870 * 214.97786 * 12 10 8 38 38 H 1.08997 * 117.50168 * 359.97438 * 12 10 8 39 39 H 1.09002 * 109.49886 * 301.37799 * 13 5 4 40 40 H 1.09000 * 109.49395 * 181.31276 * 13 5 4 41 41 H 1.09004 * 109.58908 * 65.13475 * 14 13 5 42 42 H 1.09007 * 109.58837 * 185.55836 * 14 13 5 43 43 H 1.09001 * 109.47103 * 299.99900 * 18 16 15 44 44 H 1.08999 * 109.47147 * 60.00424 * 18 16 15 45 45 H 0.97000 * 119.99406 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2455 5 6 1.6415 -2.2048 -1.1707 6 1 0.5565 -2.2821 -1.0999 7 7 2.1023 -2.8990 -2.3757 8 6 1.4742 -4.0166 -2.7913 9 8 0.5272 -4.4474 -2.1680 10 6 1.9486 -4.7310 -4.0304 11 6 1.0343 -4.7009 -5.2569 12 6 1.1926 -5.9929 -4.4515 13 6 2.2800 -2.8464 0.0632 14 6 1.7692 -2.1411 1.3235 15 7 2.0226 -0.6996 1.1944 16 6 2.6946 -0.0319 2.1531 17 8 2.8973 1.1579 2.0348 18 6 3.1940 -0.7639 3.3721 19 16 4.0492 0.3980 4.4652 20 6 4.5145 -0.6935 5.7678 21 1 4.2515 -1.7396 5.7156 22 6 5.2180 -0.2084 6.8616 23 7 5.5380 1.0668 6.9255 24 14 5.7107 -1.3654 8.2429 25 1 6.5832 -2.4385 7.7024 26 1 6.4480 -0.6065 9.2849 27 1 4.4930 -1.9710 8.8395 28 1 -0.3633 0.5083 0.8932 29 1 -0.3633 0.5195 -0.8867 30 1 -0.3633 -1.0276 -0.0064 31 1 1.6074 -0.2783 -2.1369 32 1 3.1296 -0.6498 -1.2918 33 1 2.8596 -2.5543 -2.8743 34 1 3.0244 -4.7074 -4.2040 35 1 0.0900 -4.1640 -5.1676 36 1 1.5087 -4.6578 -6.2373 37 1 1.7711 -6.7992 -4.9023 38 1 0.3525 -6.3065 -3.8320 39 1 3.3640 -2.7475 0.0050 40 1 2.0127 -3.9023 0.1036 41 1 0.6987 -2.3157 1.4315 42 1 2.2945 -2.5277 2.1969 43 1 2.3500 -1.2062 3.9015 44 1 3.8838 -1.5505 3.0664 45 1 6.0300 1.4056 7.6897 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074752532.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:55 Heat of formation + Delta-G solvation = -53.098885 kcal Electronic energy + Delta-G solvation = -25415.733623 eV Core-core repulsion = 21752.926219 eV Total energy + Delta-G solvation = -3662.807404 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.73450 -39.79974 -37.69367 -36.39504 -34.80257 -32.91751 -32.42839 -31.34513 -28.95738 -27.85589 -25.53508 -25.39815 -23.66314 -22.87341 -22.57781 -20.95460 -20.43323 -18.65201 -17.82393 -17.63669 -17.08690 -16.18522 -15.71255 -15.59754 -15.22723 -14.90573 -14.80356 -14.57200 -14.36508 -14.04851 -13.92359 -13.36867 -13.19594 -13.06831 -12.94210 -12.56230 -12.25926 -12.16874 -11.99445 -11.88697 -11.67555 -11.34892 -11.27618 -11.07071 -11.03834 -11.03570 -10.96547 -10.76493 -10.53552 -10.13147 -9.81456 -9.41906 -9.29188 -9.05891 -8.56445 -8.23057 -6.50213 -6.21492 -3.92139 2.16245 2.73106 2.90376 3.06440 3.23596 3.25560 3.29068 3.43045 3.58221 4.20177 4.22252 4.34281 4.42153 4.43707 4.54820 4.72060 4.73180 4.88058 4.92856 5.01205 5.13530 5.14604 5.19656 5.27577 5.29603 5.36933 5.41064 5.49566 5.55240 5.56335 5.65513 5.69284 5.72466 5.78423 5.87380 5.91146 5.98818 6.11897 6.17060 6.19507 6.66541 7.17105 7.55127 7.59566 7.91192 8.35081 8.55371 9.23697 10.85840 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.020248 B = 0.002442 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.487561 B =11461.661626 C =12387.155389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.143 3.857 3 H 0.106 0.894 4 C -0.135 4.135 5 C 0.145 3.855 6 H 0.093 0.907 7 N -0.722 5.722 8 C 0.543 3.457 9 O -0.539 6.539 10 C -0.197 4.197 11 C -0.153 4.153 12 C -0.148 4.148 13 C -0.144 4.144 14 C 0.111 3.889 15 N -0.616 5.616 16 C 0.537 3.463 17 O -0.517 6.517 18 C -0.151 4.151 19 S -0.061 6.061 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.401 0.599 34 H 0.124 0.876 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.570 -10.842 -24.375 28.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.039 3.961 3 H 0.124 0.876 4 C -0.174 4.174 5 C 0.040 3.960 6 H 0.111 0.889 7 N -0.372 5.372 8 C 0.330 3.670 9 O -0.416 6.416 10 C -0.218 4.218 11 C -0.191 4.191 12 C -0.185 4.185 13 C -0.184 4.184 14 C -0.013 4.013 15 N -0.353 5.353 16 C 0.325 3.675 17 O -0.391 6.391 18 C -0.302 4.302 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.235 0.765 34 H 0.142 0.858 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.127 0.873 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.112 0.888 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.860 -9.217 -23.971 27.167 hybrid contribution 0.620 -2.045 0.794 2.280 sum -8.240 -11.263 -23.177 27.054 Atomic orbital electron populations 1.22183 0.95032 1.02349 1.02650 1.21006 0.93994 0.97842 0.83279 0.87592 1.22226 1.02331 0.94059 0.98769 1.21049 1.00267 0.90930 0.83715 0.88873 1.46039 1.35262 1.27310 1.28625 1.19672 0.82339 0.80193 0.84845 1.90706 1.28164 1.65697 1.57039 1.22225 0.99754 1.04302 0.95526 1.22950 1.00479 1.01460 0.94175 1.22968 1.02638 0.90661 1.02252 1.22319 1.01394 1.00437 0.94234 1.21660 1.01263 0.80041 0.98353 1.48223 1.57294 1.08877 1.20875 1.20326 0.76531 0.87360 0.83267 1.90685 1.55740 1.14980 1.77716 1.23564 1.04062 1.04639 0.97888 1.85384 1.69186 1.11246 1.17599 1.22817 1.42204 0.96702 1.06631 0.91005 1.24990 0.95108 0.95609 0.97869 1.70010 1.37079 1.12829 1.30365 0.86230 0.78723 0.80102 0.80479 1.19953 1.20813 1.19921 0.91792 0.91574 0.92194 0.90186 0.90696 0.76504 0.85850 0.88246 0.87766 0.87892 0.87346 0.91016 0.90254 0.91186 0.88816 0.89245 0.89293 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.03 37.16 0.34 -1.31 16 2 C 0.14 1.66 3.21 -67.60 -0.22 1.45 16 3 H 0.11 1.44 7.01 -51.93 -0.36 1.07 16 4 C -0.14 -1.19 5.03 -26.57 -0.13 -1.33 16 5 C 0.14 1.32 2.21 -67.85 -0.15 1.17 16 6 H 0.09 0.98 5.93 -51.93 -0.31 0.67 16 7 N -0.72 -5.60 5.08 -53.73 -0.27 -5.88 16 8 C 0.54 5.14 7.58 -10.99 -0.08 5.06 16 9 O -0.54 -7.18 15.92 5.56 0.09 -7.09 16 10 C -0.20 -1.29 6.19 -91.77 -0.57 -1.86 16 11 C -0.15 -0.84 10.24 -26.69 -0.27 -1.11 16 12 C -0.15 -0.94 10.05 -26.69 -0.27 -1.21 16 13 C -0.14 -1.46 5.65 -26.62 -0.15 -1.61 16 14 C 0.11 1.27 5.93 -3.71 -0.02 1.25 16 15 N -0.62 -8.56 2.68 -165.21 -0.44 -9.00 16 16 C 0.54 10.09 7.72 -10.99 -0.08 10.01 16 17 O -0.52 -11.63 15.27 5.56 0.08 -11.54 16 18 C -0.15 -3.06 4.50 36.01 0.16 -2.90 16 19 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 20 C -0.54 -15.24 9.50 30.94 0.29 -14.94 16 21 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.16 13.22 55.49 0.73 -25.43 16 24 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.58 5.72 -51.93 -0.30 0.28 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.40 2.14 8.61 -40.82 -0.35 1.79 16 34 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.11 0.87 7.67 -51.93 -0.40 0.47 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 0.74 7.50 -51.93 -0.39 0.35 16 42 H 0.09 1.10 5.93 -51.92 -0.31 0.79 16 43 H 0.09 1.70 7.94 -51.91 -0.41 1.28 16 44 H 0.09 1.67 7.69 -51.92 -0.40 1.27 16 45 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 377.46 15.07 5.69 5.69 Total: -1.00 -35.56 377.46 -9.61 -45.17 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -7.00 Total: 0.87 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -1.25 Total: -5.34 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.02 Total: -40.30 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: 0.17 Total: -18.63 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.56 -9.61 -45.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074752532.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.926 kcal (2) G-P(sol) polarization free energy of solvation -35.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds