Wall clock time and date at job start Tue Mar 31 2020 14:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.70521 * 2 1 4 4 C 1.52760 * 109.50911 * 239.87982 * 2 1 3 5 5 C 1.53036 * 109.38537 * 185.71123 * 4 2 1 6 6 H 1.09000 * 109.44990 * 301.23214 * 5 4 2 7 7 N 1.46496 * 109.46398 * 181.26093 * 5 4 2 8 8 C 1.34773 * 120.00437 * 154.93108 * 7 5 4 9 9 O 1.21292 * 119.99899 * 0.02562 * 8 7 5 10 10 C 1.50706 * 120.00440 * 180.02562 * 8 7 5 11 11 C 1.53000 * 117.49821 * 248.74591 * 10 8 7 12 12 C 1.52994 * 117.49835 * 180.08710 * 10 8 7 13 13 C 1.53041 * 109.53997 * 61.23730 * 5 4 2 14 14 C 1.53190 * 109.31290 * 298.63946 * 13 5 4 15 15 N 1.46925 * 108.77783 * 54.63397 * 14 13 5 16 16 C 1.34778 * 120.63324 * 126.36561 * 15 14 13 17 17 O 1.21282 * 119.99686 * 174.19564 * 16 15 14 18 18 C 1.50697 * 120.00024 * 354.20232 * 16 15 14 19 19 S 1.80995 * 109.47213 * 179.97438 * 18 16 15 20 20 C 1.76202 * 100.00044 * 180.02562 * 19 18 16 21 21 H 1.08001 * 120.00099 * 359.97438 * 20 19 18 22 22 C 1.38805 * 119.99801 * 180.02562 * 20 19 18 23 23 N 1.31629 * 119.99839 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99687 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.46899 * 179.97438 * 24 22 20 26 26 H 1.48497 * 109.47015 * 299.99601 * 24 22 20 27 27 H 1.48504 * 109.47364 * 59.99571 * 24 22 20 28 28 H 1.09003 * 109.46991 * 305.44883 * 1 2 3 29 29 H 1.09000 * 109.46877 * 65.44432 * 1 2 3 30 30 H 1.08990 * 109.47621 * 185.44566 * 1 2 3 31 31 H 1.08996 * 109.56543 * 65.67211 * 4 2 1 32 32 H 1.09005 * 109.38985 * 305.63634 * 4 2 1 33 33 H 0.97004 * 119.99852 * 334.92930 * 7 5 4 34 34 H 1.08991 * 115.54669 * 34.41336 * 10 8 7 35 35 H 1.09010 * 117.49461 * 359.97438 * 11 10 8 36 36 H 1.08992 * 117.49664 * 145.01439 * 11 10 8 37 37 H 1.08997 * 117.49702 * 214.97535 * 12 10 8 38 38 H 1.09000 * 117.50207 * 359.97438 * 12 10 8 39 39 H 1.09002 * 109.50010 * 178.68188 * 13 5 4 40 40 H 1.09002 * 109.49450 * 58.59014 * 13 5 4 41 41 H 1.08998 * 109.59052 * 294.84147 * 14 13 5 42 42 H 1.09006 * 109.58543 * 174.41671 * 14 13 5 43 43 H 1.09005 * 109.46849 * 59.99587 * 18 16 15 44 44 H 1.08998 * 109.47101 * 300.00313 * 18 16 15 45 45 H 0.96991 * 120.00382 * 0.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0402 -0.7226 -1.2455 5 6 3.5638 -0.8464 -1.1726 6 1 4.0056 0.1474 -1.0993 7 7 4.0577 -1.5123 -2.3803 8 6 5.3216 -1.3006 -2.7976 9 8 6.0503 -0.5591 -2.1729 10 6 5.8296 -1.9853 -4.0404 11 6 6.8993 -3.0650 -3.8650 12 6 7.2739 -1.7056 -4.4607 13 6 3.9522 -1.6688 0.0582 14 6 3.4643 -0.9520 1.3211 15 7 2.0225 -0.6996 1.1945 16 6 1.1672 -1.1070 2.1532 17 8 -0.0048 -0.8016 2.0898 18 6 1.6672 -1.9417 3.3039 19 16 0.2903 -2.3252 4.4142 20 6 1.1351 -3.2789 5.6314 21 1 2.1956 -3.4596 5.5355 22 6 0.4375 -3.7988 6.7129 23 7 -0.8551 -3.5790 6.8295 24 14 1.3333 -4.8093 8.0036 25 1 0.3707 -5.2448 9.0470 26 1 1.9429 -6.0022 7.3629 27 1 2.3986 -3.9836 8.6271 28 1 -0.3633 0.5960 0.8372 29 1 -0.3633 0.4271 -0.9347 30 1 -0.3634 -1.0229 0.0975 31 1 1.7633 -0.1567 -2.1349 32 1 1.5963 -1.7170 -1.2942 33 1 3.4751 -2.1057 -2.8797 34 1 5.0940 -2.1294 -4.8316 35 1 7.2360 -3.2798 -2.8506 36 1 6.8677 -3.9193 -4.5411 37 1 7.4885 -1.6663 -5.5286 38 1 7.8566 -1.0262 -3.8387 39 1 5.0362 -1.7764 0.0966 40 1 3.4903 -2.6543 -0.0022 41 1 3.9928 -0.0051 1.4311 42 1 3.6502 -1.5800 2.1925 43 1 2.4305 -1.3874 3.8501 44 1 2.0951 -2.8685 2.9215 45 1 -1.3201 -3.0540 6.1595 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074752533.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:58 Heat of formation + Delta-G solvation = -44.784147 kcal Electronic energy + Delta-G solvation = -25500.202069 eV Core-core repulsion = 21837.755219 eV Total energy + Delta-G solvation = -3662.446850 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.79082 -39.97313 -37.68173 -36.37272 -34.79545 -33.29193 -32.53760 -31.45304 -29.12620 -27.41188 -25.50749 -24.84477 -23.73195 -22.88069 -22.34413 -21.13936 -20.45402 -19.10925 -18.18343 -17.78933 -16.74515 -16.35397 -16.18743 -15.63613 -15.49105 -14.93391 -14.72598 -14.45214 -14.26580 -13.92813 -13.84013 -13.48269 -13.25088 -12.97724 -12.61049 -12.41646 -12.36352 -12.16030 -11.99965 -11.90518 -11.89216 -11.72916 -11.29193 -11.16718 -11.08174 -10.97654 -10.92773 -10.88983 -10.18778 -10.18259 -9.57711 -9.40239 -9.02401 -8.84558 -8.56955 -8.22935 -6.68147 -6.63100 -4.00940 2.13873 2.68358 2.78614 2.96092 3.31300 3.37064 3.42208 3.42436 3.57096 4.20085 4.23726 4.32777 4.37747 4.42729 4.50319 4.67422 4.68266 4.81798 4.86275 5.03917 5.15278 5.15453 5.19884 5.21456 5.29795 5.37717 5.41985 5.48174 5.49246 5.55363 5.68226 5.68732 5.71213 5.73987 5.80564 5.91429 5.99072 6.13513 6.20320 6.41331 6.74402 7.13646 7.47985 7.88056 7.90738 8.47539 8.49178 9.25989 10.80815 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016925 B = 0.002591 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.007583 B =10804.495218 C =12076.431299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.152 3.848 3 H 0.071 0.929 4 C -0.138 4.138 5 C 0.146 3.854 6 H 0.090 0.910 7 N -0.722 5.722 8 C 0.543 3.457 9 O -0.539 6.539 10 C -0.197 4.197 11 C -0.152 4.152 12 C -0.148 4.148 13 C -0.144 4.144 14 C 0.111 3.889 15 N -0.618 5.618 16 C 0.535 3.465 17 O -0.508 6.508 18 C -0.131 4.131 19 S -0.116 6.116 20 C -0.607 4.607 21 H 0.065 0.935 22 C 0.035 3.965 23 N -0.884 5.884 24 Si 1.083 2.917 25 H -0.278 1.278 26 H -0.285 1.285 27 H -0.285 1.285 28 H 0.084 0.916 29 H 0.041 0.959 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.401 0.599 34 H 0.123 0.877 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.262 3.613 -24.041 27.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.048 3.952 3 H 0.089 0.911 4 C -0.177 4.177 5 C 0.042 3.958 6 H 0.108 0.892 7 N -0.372 5.372 8 C 0.330 3.670 9 O -0.416 6.416 10 C -0.219 4.219 11 C -0.190 4.190 12 C -0.185 4.185 13 C -0.184 4.184 14 C -0.013 4.013 15 N -0.354 5.354 16 C 0.323 3.677 17 O -0.383 6.383 18 C -0.282 4.282 19 S 0.110 5.890 20 C -0.755 4.755 21 H 0.083 0.917 22 C -0.175 4.175 23 N -0.518 5.518 24 Si 0.909 3.091 25 H -0.203 1.203 26 H -0.212 1.212 27 H -0.211 1.211 28 H 0.103 0.897 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.235 0.765 34 H 0.141 0.859 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.127 0.873 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.112 0.888 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.795 3.789 -22.263 25.477 hybrid contribution 1.560 0.013 -1.666 2.283 sum 13.355 3.802 -23.929 27.666 Atomic orbital electron populations 1.22214 0.92002 1.04252 1.01144 1.21022 0.96278 0.94848 0.83065 0.91130 1.22255 0.93945 1.02575 0.98951 1.20977 0.93955 0.97148 0.83739 0.89159 1.46026 1.13610 1.49158 1.28444 1.19692 0.81562 0.80882 0.84913 1.90712 1.56186 1.37375 1.57319 1.22213 0.94637 1.06192 0.98809 1.22963 0.99958 0.92699 1.03356 1.22966 0.94495 0.99160 1.01915 1.22322 1.02065 0.99809 0.94185 1.21688 0.80409 1.00772 0.98411 1.48178 1.07133 1.59364 1.20767 1.20251 0.85806 0.79204 0.82421 1.90735 1.16969 1.55041 1.75542 1.23402 1.05105 1.01436 0.98226 1.84777 1.11105 1.68839 1.24279 1.23693 0.98482 1.41123 1.12197 0.91681 1.26048 0.96002 0.97062 0.98408 1.70798 1.08436 1.35956 1.36602 0.83338 0.74904 0.75603 0.75222 1.20270 1.21152 1.21123 0.89733 0.93989 0.91400 0.90114 0.90675 0.76463 0.85892 0.88155 0.87707 0.87905 0.87350 0.90199 0.91002 0.91041 0.88836 0.89136 0.89161 0.90999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 7.60 37.16 0.28 -1.56 16 2 C 0.15 1.75 3.48 -67.82 -0.24 1.52 16 3 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 4 C -0.14 -1.22 4.81 -26.84 -0.13 -1.35 16 5 C 0.15 1.33 2.42 -67.89 -0.16 1.17 16 6 H 0.09 0.95 7.58 -51.93 -0.39 0.56 16 7 N -0.72 -5.59 5.08 -53.77 -0.27 -5.87 16 8 C 0.54 5.14 7.58 -10.98 -0.08 5.06 16 9 O -0.54 -7.19 15.92 5.55 0.09 -7.10 16 10 C -0.20 -1.29 6.19 -91.77 -0.57 -1.86 16 11 C -0.15 -0.89 10.24 -26.69 -0.27 -1.16 16 12 C -0.15 -0.94 10.05 -26.70 -0.27 -1.21 16 13 C -0.14 -1.44 5.65 -26.61 -0.15 -1.59 16 14 C 0.11 1.25 6.35 -3.71 -0.02 1.23 16 15 N -0.62 -8.45 2.98 -165.47 -0.49 -8.94 16 16 C 0.54 9.75 7.51 -10.99 -0.08 9.67 16 17 O -0.51 -10.71 11.44 5.56 0.06 -10.65 16 18 C -0.13 -2.63 4.51 36.00 0.16 -2.47 16 19 S -0.12 -3.10 19.60 -107.50 -2.11 -5.21 16 20 C -0.61 -17.43 9.50 30.94 0.29 -17.14 16 21 H 0.06 1.79 7.80 -52.49 -0.41 1.38 16 22 C 0.04 1.03 5.49 -17.43 -0.10 0.93 16 23 N -0.88 -27.44 13.67 55.49 0.76 -26.68 16 24 Si 1.08 24.91 29.92 -169.99 -5.09 19.83 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 H 0.08 1.34 6.53 -51.93 -0.34 1.00 16 29 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 1.05 6.97 -51.93 -0.36 0.69 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.40 2.14 8.60 -40.82 -0.35 1.79 16 34 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.10 0.68 8.14 -51.92 -0.42 0.26 16 36 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.11 0.87 7.67 -51.93 -0.40 0.47 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.09 1.08 5.93 -51.93 -0.31 0.78 16 43 H 0.09 1.72 7.71 -51.91 -0.40 1.32 16 44 H 0.09 1.71 7.93 -51.92 -0.41 1.30 16 45 H 0.28 8.79 7.12 -40.82 -0.29 8.50 16 LS Contribution 374.69 15.07 5.65 5.65 Total: -1.00 -35.45 374.69 -9.85 -45.29 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -7.11 Total: 2.44 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -1.33 Total: -8.75 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: -0.01 Total: -41.49 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: 0.15 Total: -17.75 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -5.09 Total: 19.83 kcal Atomic # 16 Polarization: -3.10 SS G_CDS: -2.11 Total: -5.21 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.45 -9.85 -45.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074752533.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.510 kcal (2) G-P(sol) polarization free energy of solvation -35.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds