Wall clock time and date at job start Tue Mar 31 2020 14:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.58607 * 2 1 4 4 C 1.53190 * 109.58665 * 120.42969 * 2 1 3 5 5 C 1.53041 * 109.31648 * 65.15078 * 4 2 1 6 6 H 1.09004 * 109.44770 * 301.35197 * 5 4 2 7 7 N 1.46493 * 109.46089 * 181.38132 * 5 4 2 8 8 C 1.34784 * 119.99864 * 154.93117 * 7 5 4 9 9 O 1.21283 * 119.99649 * 359.72839 * 8 7 5 10 10 C 1.50694 * 119.99988 * 179.72721 * 8 7 5 11 11 S 1.81005 * 109.47244 * 179.97438 * 10 8 7 12 12 C 1.76192 * 100.00090 * 179.97438 * 11 10 8 13 13 H 1.08001 * 120.00308 * 0.02562 * 12 11 10 14 14 C 1.38797 * 119.99747 * 180.02562 * 12 11 10 15 15 N 1.31628 * 120.00171 * 359.97438 * 14 12 11 16 16 Si 1.86808 * 119.99848 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47396 * 59.99622 * 16 14 12 18 18 H 1.48504 * 109.46972 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46804 * 299.99684 * 16 14 12 20 20 C 1.53042 * 109.53534 * 61.36234 * 5 4 2 21 21 C 1.53192 * 109.31610 * 298.63605 * 20 5 4 22 22 N 1.46927 * 108.77239 * 54.63632 * 21 20 5 23 23 C 1.34782 * 120.62953 * 126.41964 * 22 21 20 24 24 O 1.21278 * 119.99457 * 179.97438 * 23 22 21 25 25 C 1.50692 * 119.99858 * 359.97438 * 23 22 21 26 26 C 1.53007 * 117.49692 * 248.62548 * 25 23 22 27 27 C 1.53005 * 59.99973 * 252.50941 * 26 25 23 28 28 H 1.09003 * 109.47057 * 180.28388 * 1 2 3 29 29 H 1.09006 * 109.47195 * 300.28032 * 1 2 3 30 30 H 1.08999 * 109.47598 * 60.28047 * 1 2 3 31 31 H 1.08996 * 109.49587 * 305.19755 * 4 2 1 32 32 H 1.09004 * 109.49377 * 185.10339 * 4 2 1 33 33 H 0.97000 * 120.00740 * 334.65810 * 7 5 4 34 34 H 1.08998 * 109.47224 * 299.99701 * 10 8 7 35 35 H 1.09002 * 109.47054 * 60.00213 * 10 8 7 36 36 H 0.97000 * 119.99868 * 179.97438 * 15 14 12 37 37 H 1.09003 * 109.49853 * 58.59110 * 20 5 4 38 38 H 1.09000 * 109.49622 * 178.65246 * 20 5 4 39 39 H 1.08994 * 109.58849 * 174.42564 * 21 20 5 40 40 H 1.09003 * 109.58609 * 294.85290 * 21 20 5 41 41 H 1.08999 * 115.55449 * 34.33276 * 25 23 22 42 42 H 1.08993 * 117.50052 * 359.97438 * 26 25 23 43 43 H 1.08995 * 117.49782 * 145.02355 * 26 25 23 44 44 H 1.08994 * 117.50085 * 252.51295 * 27 26 25 45 45 H 1.09001 * 117.49334 * 107.48255 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7310 1.2444 5 6 1.6415 -2.2056 1.1674 6 1 0.5565 -2.2827 1.0963 7 7 2.1024 -2.9008 2.3716 8 6 1.4743 -4.0188 2.7865 9 8 0.5243 -4.4465 2.1654 10 6 1.9523 -4.7374 4.0218 11 16 0.9123 -6.1894 4.3156 12 6 1.6733 -6.8207 5.7740 13 1 2.5232 -6.3113 6.2035 14 6 1.1805 -7.9729 6.3707 15 7 0.1443 -8.5936 5.8475 16 14 1.9868 -8.6419 7.9173 17 1 1.9154 -7.6215 8.9939 18 1 1.2772 -9.8714 8.3534 19 1 3.4085 -8.9643 7.6344 20 6 2.2800 -2.8463 -0.0671 21 6 1.7691 -2.1394 -1.3265 22 7 2.0225 -0.6981 -1.1954 23 6 2.6935 -0.0289 -2.1538 24 8 2.8959 1.1609 -2.0340 25 6 3.1923 -0.7590 -3.3740 26 6 4.7054 -0.9242 -3.5291 27 6 3.9471 0.0564 -4.4259 28 1 -0.3633 -1.0277 0.0051 29 1 -0.3634 0.5182 0.8875 30 1 -0.3634 0.5094 -0.8925 31 1 1.6075 -0.2812 2.1364 32 1 3.1298 -0.6520 1.2904 33 1 2.8622 -2.5588 2.8683 34 1 2.9861 -5.0529 3.8814 35 1 1.8901 -4.0670 4.8790 36 1 -0.1998 -9.3990 6.2644 37 1 3.3640 -2.7474 -0.0088 38 1 2.0127 -3.9022 -0.1083 39 1 2.2943 -2.5247 -2.2004 40 1 0.6986 -2.3138 -1.4346 41 1 2.5581 -1.5721 -3.7274 42 1 5.3402 -0.5045 -2.7488 43 1 5.0670 -1.8462 -3.9844 44 1 3.8096 -0.2204 -5.4711 45 1 4.0828 1.1210 -4.2351 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074843751.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:38 Heat of formation + Delta-G solvation = -52.535476 kcal Electronic energy + Delta-G solvation = -25354.560241 eV Core-core repulsion = 21691.777269 eV Total energy + Delta-G solvation = -3662.782972 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.93039 -39.46775 -38.01495 -36.34219 -34.65049 -32.84324 -32.45083 -31.56091 -29.09668 -27.76103 -25.54718 -25.31478 -24.13251 -22.82267 -22.66436 -20.57061 -20.34651 -18.74695 -18.12512 -17.74476 -16.56210 -16.42794 -15.80487 -15.57802 -15.17689 -15.00315 -14.82487 -14.61303 -14.37418 -14.05594 -13.87149 -13.43183 -13.23587 -13.21837 -12.83180 -12.62803 -12.37604 -12.26761 -12.06756 -11.93425 -11.76073 -11.49702 -11.21442 -11.06800 -11.05605 -10.98266 -10.86917 -10.79913 -10.57242 -10.04057 -9.84541 -9.47485 -9.08623 -8.97484 -8.93150 -8.27101 -6.52650 -6.23802 -3.94588 2.17223 2.57599 2.98895 3.04155 3.21859 3.25823 3.28922 3.47576 3.66493 4.06623 4.18488 4.33610 4.41770 4.48661 4.54117 4.62517 4.70863 4.82141 4.85558 5.07654 5.09086 5.11347 5.13740 5.21116 5.24351 5.28346 5.36744 5.42917 5.54239 5.58089 5.61225 5.66836 5.69195 5.73712 5.85167 5.87288 5.88702 6.10801 6.11708 6.26896 6.59732 7.07946 7.57122 7.66789 7.87568 8.32799 8.56737 9.21503 10.83520 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.028028 B = 0.002186 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.744022 B =12803.140378 C =13128.350747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.142 3.858 3 H 0.103 0.897 4 C -0.136 4.136 5 C 0.146 3.854 6 H 0.093 0.907 7 N -0.735 5.735 8 C 0.534 3.466 9 O -0.517 6.517 10 C -0.154 4.154 11 S -0.060 6.060 12 C -0.536 4.536 13 H 0.072 0.928 14 C 0.074 3.926 15 N -0.868 5.868 16 Si 0.919 3.081 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.274 1.274 20 C -0.146 4.146 21 C 0.109 3.891 22 N -0.603 5.603 23 C 0.547 3.453 24 O -0.545 6.545 25 C -0.197 4.197 26 C -0.151 4.151 27 C -0.148 4.148 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.398 0.602 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.269 0.731 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.126 0.874 42 H 0.099 0.901 43 H 0.105 0.895 44 H 0.103 0.897 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.020 17.261 -16.992 25.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.039 3.961 3 H 0.121 0.879 4 C -0.175 4.175 5 C 0.041 3.959 6 H 0.111 0.889 7 N -0.389 5.389 8 C 0.320 3.680 9 O -0.391 6.391 10 C -0.305 4.305 11 S 0.167 5.833 12 C -0.685 4.685 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.199 1.199 20 C -0.185 4.185 21 C -0.014 4.014 22 N -0.336 5.336 23 C 0.336 3.664 24 O -0.423 6.423 25 C -0.218 4.218 26 C -0.188 4.188 27 C -0.186 4.186 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.231 0.769 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.143 0.857 42 H 0.117 0.883 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.385 17.014 -17.932 25.299 hybrid contribution 1.919 -0.021 2.039 2.800 sum 7.304 16.993 -15.894 24.387 Atomic orbital electron populations 1.22197 0.94496 1.03031 1.02671 1.21124 0.94425 0.97391 0.83157 0.87875 1.22213 1.02030 0.94899 0.98310 1.20877 1.00403 0.90200 0.84418 0.88884 1.46090 1.35760 1.28303 1.28729 1.20321 0.82414 0.79703 0.85582 1.90694 1.26950 1.64932 1.56521 1.23539 1.05564 1.04073 0.97310 1.85371 1.40339 1.22513 1.35074 1.22823 1.19085 1.14019 1.12538 0.90993 1.24991 0.94959 0.95685 0.97933 1.70004 1.22545 1.18245 1.39490 0.86227 0.79267 0.78274 0.81752 1.19936 1.20800 1.19937 1.22342 1.01105 1.01136 0.93944 1.21789 1.01666 0.79128 0.98867 1.48164 1.55562 1.09451 1.20438 1.19662 0.76977 0.86687 0.83070 1.90676 1.57690 1.15215 1.78693 1.22241 0.97200 1.04414 0.97985 1.22937 0.90971 1.01956 1.02973 1.22960 1.01400 0.98762 0.95457 0.91589 0.91052 0.92173 0.89757 0.90942 0.76871 0.89266 0.89257 0.92115 0.91258 0.89529 0.89150 0.90694 0.85654 0.88275 0.87655 0.87892 0.87467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 9.03 37.16 0.34 -1.06 16 2 C 0.14 1.29 3.21 -67.60 -0.22 1.07 16 3 H 0.10 1.05 7.00 -51.93 -0.36 0.68 16 4 C -0.14 -1.16 5.02 -26.61 -0.13 -1.30 16 5 C 0.15 1.56 2.21 -67.89 -0.15 1.41 16 6 H 0.09 1.17 5.92 -51.93 -0.31 0.86 16 7 N -0.74 -9.08 5.07 -53.77 -0.27 -9.35 16 8 C 0.53 9.37 7.81 -10.98 -0.09 9.28 16 9 O -0.52 -11.01 15.52 5.56 0.09 -10.92 16 10 C -0.15 -3.00 6.16 36.00 0.22 -2.78 16 11 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 12 C -0.54 -15.08 9.50 30.94 0.29 -14.79 16 13 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 14 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 15 N -0.87 -25.89 13.22 55.49 0.73 -25.16 16 16 Si 0.92 21.19 29.55 -169.99 -5.02 16.16 16 17 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 20 C -0.15 -1.42 5.65 -26.61 -0.15 -1.57 16 21 C 0.11 0.87 5.88 -3.71 -0.02 0.85 16 22 N -0.60 -5.51 2.68 -165.22 -0.44 -5.95 16 23 C 0.55 5.71 7.48 -10.99 -0.08 5.63 16 24 O -0.55 -7.51 15.67 5.56 0.09 -7.42 16 25 C -0.20 -1.50 4.96 -91.77 -0.46 -1.95 16 26 C -0.15 -0.98 10.23 -26.73 -0.27 -1.25 16 27 C -0.15 -1.03 10.04 -26.73 -0.27 -1.30 16 28 H 0.07 0.59 5.72 -51.93 -0.30 0.29 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.40 3.88 8.61 -40.82 -0.35 3.53 16 34 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 35 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 36 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.09 0.57 5.67 -51.93 -0.29 0.28 16 40 H 0.07 0.59 7.50 -51.93 -0.39 0.21 16 41 H 0.13 0.73 6.82 -51.93 -0.35 0.37 16 42 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.11 0.90 7.67 -51.93 -0.40 0.50 16 LS Contribution 376.89 15.07 5.68 5.68 Total: -1.00 -35.01 376.89 -9.40 -44.41 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -6.95 Total: 2.12 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -1.08 Total: -5.77 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.02 Total: -40.46 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: 0.17 Total: -18.35 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.01 -9.40 -44.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074843751.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.129 kcal (2) G-P(sol) polarization free energy of solvation -35.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds