Wall clock time and date at job start Tue Mar 31 2020 15:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47415 * 2 1 4 4 C 1.53005 * 109.47036 * 119.99676 * 2 1 3 5 5 C 1.52998 * 109.47394 * 185.00283 * 4 2 1 6 6 N 1.46498 * 109.47021 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99864 * 179.97438 * 6 5 4 8 8 O 1.21284 * 119.99849 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.00182 * 179.97438 * 7 6 5 10 10 S 1.80996 * 109.47266 * 179.97438 * 9 7 6 11 11 C 1.76204 * 100.00063 * 180.02562 * 10 9 7 12 12 H 1.08004 * 119.99702 * 0.02562 * 11 10 9 13 13 C 1.38795 * 120.00211 * 179.97438 * 11 10 9 14 14 N 1.31629 * 120.00217 * 179.97438 * 13 11 10 15 15 Si 1.86808 * 119.99655 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47224 * 89.99937 * 15 13 11 17 17 H 1.48506 * 109.46837 * 209.99537 * 15 13 11 18 18 H 1.48497 * 109.47303 * 329.99642 * 15 13 11 19 19 N 1.46502 * 109.47570 * 239.99768 * 2 1 3 20 20 C 1.34775 * 120.00042 * 85.00431 * 19 2 1 21 21 O 1.21610 * 119.99723 * 359.97438 * 20 19 2 22 22 C 1.47101 * 119.99792 * 179.73059 * 20 19 2 23 23 C 1.32992 * 119.99773 * 174.30782 * 22 20 19 24 24 C 1.50694 * 120.00123 * 352.93979 * 23 22 20 25 25 C 1.53001 * 117.49938 * 181.82700 * 24 23 22 26 26 C 1.53005 * 117.49997 * 113.16658 * 24 23 22 27 27 H 1.08995 * 109.47839 * 300.00139 * 1 2 3 28 28 H 1.09004 * 109.46655 * 60.00630 * 1 2 3 29 29 H 1.09004 * 109.47044 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47192 * 305.00225 * 4 2 1 31 31 H 1.09004 * 109.47127 * 64.99775 * 4 2 1 32 32 H 1.08998 * 109.46801 * 299.99824 * 5 4 2 33 33 H 1.09001 * 109.47188 * 60.00150 * 5 4 2 34 34 H 0.96997 * 120.00464 * 359.97438 * 6 5 4 35 35 H 1.08995 * 109.47195 * 300.00709 * 9 7 6 36 36 H 1.09001 * 109.46481 * 60.00488 * 9 7 6 37 37 H 0.96999 * 119.99874 * 180.02562 * 14 13 11 38 38 H 0.97004 * 119.99661 * 265.00367 * 19 2 1 39 39 H 1.07998 * 119.99778 * 354.29831 * 22 20 19 40 40 H 1.08005 * 120.00168 * 172.94707 * 23 22 20 41 41 H 1.09003 * 115.55324 * 327.49457 * 24 23 22 42 42 H 1.09001 * 117.50103 * 359.97438 * 25 24 23 43 43 H 1.09007 * 117.49932 * 145.02275 * 25 24 23 44 44 H 1.08996 * 117.50159 * 214.98112 * 26 24 23 45 45 H 1.08996 * 117.49728 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5647 -0.6132 1.3139 6 7 4.0529 -1.3033 2.5104 7 6 5.3738 -1.3394 2.7757 8 8 6.1582 -0.8002 2.0241 9 6 5.8760 -2.0487 4.0069 10 16 7.6800 -1.9224 4.0824 11 6 7.9869 -2.8108 5.5728 12 1 7.1630 -3.2328 6.1292 13 6 9.2873 -2.9691 6.0311 14 7 9.5165 -3.6324 7.1448 15 14 10.7123 -2.2396 5.0683 16 1 10.9764 -0.8584 5.5452 17 1 11.9245 -3.0734 5.2703 18 1 10.3688 -2.2074 3.6239 19 7 2.0184 -0.6906 -1.1961 20 6 2.1472 -0.0183 -2.3571 21 8 1.8576 1.1615 -2.4118 22 6 2.6433 -0.7104 -3.5566 23 6 2.6638 -0.0798 -4.7273 24 6 2.0343 1.2829 -4.8603 25 6 2.0529 1.9377 -6.2430 26 6 2.9641 2.4671 -5.1328 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.6053 -0.2616 2.1371 31 1 1.7515 -1.7715 1.2057 32 1 3.9994 -1.0728 0.4262 33 1 3.8531 0.4370 1.3576 34 1 3.4256 -1.7342 3.1118 35 1 5.4417 -1.5881 4.8941 36 1 5.5872 -3.0989 3.9643 37 1 10.4254 -3.7427 7.4653 38 1 2.2491 -1.6318 -1.1525 39 1 2.9910 -1.7305 -3.4864 40 1 3.1315 -0.5444 -5.5828 41 1 1.1629 1.4618 -4.2304 42 1 2.5208 1.3831 -7.0564 43 1 1.1938 2.5477 -6.5226 44 1 2.7043 3.4250 -4.6824 45 1 4.0312 2.2605 -5.2153 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075675574.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:40 Heat of formation + Delta-G solvation = -41.611194 kcal Electronic energy + Delta-G solvation = -24081.070997 eV Core-core repulsion = 20418.761737 eV Total energy + Delta-G solvation = -3662.309260 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.31510 -39.29667 -37.86505 -36.63945 -34.50265 -32.96534 -32.45024 -31.67587 -30.16035 -28.23293 -25.63153 -24.88978 -23.39754 -22.62694 -21.98772 -21.07827 -20.45455 -19.82552 -17.88827 -17.37524 -16.74154 -16.29470 -16.03625 -15.81881 -15.33375 -15.12625 -14.96126 -14.78594 -14.28812 -13.87753 -13.79339 -13.71532 -13.43172 -13.33955 -12.86503 -12.80551 -12.40341 -12.29849 -11.99409 -11.84529 -11.71733 -11.60330 -11.39450 -11.28399 -11.26025 -11.01589 -10.69669 -10.61531 -9.87091 -9.82290 -9.56317 -9.49900 -9.25390 -9.03314 -8.97715 -8.51242 -6.93118 -6.30028 -4.01898 1.00984 2.74622 2.91543 2.95980 2.99476 3.28355 3.33310 3.49920 3.62953 3.68774 4.25050 4.32204 4.38938 4.47832 4.55767 4.65986 4.70568 4.74931 4.78333 4.99057 5.03055 5.06624 5.08317 5.09105 5.24849 5.33343 5.33667 5.35826 5.55113 5.59325 5.69251 5.76569 5.80148 5.82273 5.83379 5.87611 5.92106 5.99269 6.15399 6.23944 6.48825 7.24464 7.57750 7.92992 7.99986 8.40251 8.47104 9.16212 10.79138 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.018352 B = 0.001984 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.352583 B =14106.552931 C =15249.747967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 H 0.093 0.907 4 C -0.140 4.140 5 C 0.121 3.879 6 N -0.738 5.738 7 C 0.529 3.471 8 O -0.519 6.519 9 C -0.124 4.124 10 S -0.142 6.142 11 C -0.522 4.522 12 H 0.088 0.912 13 C 0.096 3.904 14 N -0.880 5.880 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 N -0.724 5.724 20 C 0.546 3.454 21 O -0.534 6.534 22 C -0.221 4.221 23 C -0.031 4.031 24 C -0.129 4.129 25 C -0.187 4.187 26 C -0.156 4.156 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.399 0.601 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.271 0.729 38 H 0.401 0.599 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.132 0.868 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.498 5.521 -21.717 31.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.111 0.889 4 C -0.178 4.178 5 C -0.003 4.003 6 N -0.393 5.393 7 C 0.315 3.685 8 O -0.393 6.393 9 C -0.275 4.275 10 S 0.084 5.916 11 C -0.669 4.669 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.517 5.517 15 Si 0.681 3.319 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.159 1.159 19 N -0.376 5.376 20 C 0.335 3.665 21 O -0.413 6.413 22 C -0.242 4.242 23 C -0.051 4.051 24 C -0.147 4.147 25 C -0.224 4.224 26 C -0.193 4.193 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.233 0.767 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.235 0.765 39 H 0.147 0.853 40 H 0.144 0.856 41 H 0.150 0.850 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -20.256 7.204 -22.856 31.379 hybrid contribution -0.308 -1.298 1.134 1.750 sum -20.564 5.907 -21.722 30.490 Atomic orbital electron populations 1.22157 0.94858 1.02215 1.02739 1.20858 0.94084 0.97757 0.83195 0.88939 1.22131 0.95323 1.01992 0.98363 1.21268 0.92743 0.97980 0.88288 1.45965 1.07707 1.58513 1.27105 1.20298 0.81661 0.79759 0.86777 1.90710 1.54995 1.44475 1.49124 1.23278 1.03057 1.03249 0.97889 1.84809 0.98104 1.73957 1.34719 1.22317 0.97280 1.39585 1.07757 0.89389 1.24713 0.98304 0.93871 0.94414 1.69937 1.21722 1.39491 1.20512 0.86735 0.82148 0.79901 0.83070 1.19193 1.19933 1.15931 1.46051 1.67745 1.14061 1.09729 1.18607 0.77442 0.86757 0.83671 1.90757 1.50252 1.15673 1.84592 1.22596 1.07250 1.01141 0.93183 1.23131 0.91486 0.93824 0.96631 1.21564 1.03018 0.91239 0.98852 1.23098 1.02801 1.04549 0.91991 1.22822 0.96921 0.97647 1.01874 0.91466 0.91947 0.92396 0.89426 0.90512 0.91557 0.91532 0.76681 0.88492 0.88476 0.91937 0.76494 0.85271 0.85592 0.85018 0.88914 0.88671 0.88499 0.88917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 9.48 37.15 0.35 -0.69 16 2 C 0.15 1.07 2.57 -67.93 -0.17 0.90 16 3 H 0.09 0.87 7.58 -51.93 -0.39 0.48 16 4 C -0.14 -0.89 4.87 -26.73 -0.13 -1.02 16 5 C 0.12 1.25 5.56 -4.04 -0.02 1.23 16 6 N -0.74 -8.77 5.56 -60.30 -0.33 -9.11 16 7 C 0.53 9.23 7.85 -10.98 -0.09 9.14 16 8 O -0.52 -11.22 15.86 5.55 0.09 -11.13 16 9 C -0.12 -2.36 6.16 36.01 0.22 -2.14 16 10 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 11 C -0.52 -14.98 10.04 30.94 0.31 -14.67 16 12 H 0.09 2.63 8.03 -52.48 -0.42 2.20 16 13 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 14 N -0.88 -26.47 13.97 55.49 0.78 -25.70 16 15 Si 0.86 21.78 27.74 -169.99 -4.72 17.07 16 16 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 19 N -0.72 -5.36 4.53 -54.99 -0.25 -5.60 16 20 C 0.55 5.23 7.64 -12.67 -0.10 5.14 16 21 O -0.53 -6.67 12.97 5.27 0.07 -6.60 16 22 C -0.22 -1.67 10.02 -37.81 -0.38 -2.05 16 23 C -0.03 -0.23 9.74 -36.13 -0.35 -0.58 16 24 C -0.13 -1.11 4.35 -91.77 -0.40 -1.51 16 25 C -0.19 -1.29 10.24 -26.69 -0.27 -1.56 16 26 C -0.16 -1.30 10.24 -26.69 -0.27 -1.58 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.75 7.75 -51.93 -0.40 0.35 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.40 3.48 8.47 -40.82 -0.35 3.14 16 35 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 36 H 0.10 1.70 8.14 -51.91 -0.42 1.27 16 37 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.40 2.16 8.59 -40.82 -0.35 1.81 16 39 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 41 H 0.13 1.38 6.23 -51.93 -0.32 1.06 16 42 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 393.15 15.07 5.92 5.92 Total: -1.00 -35.87 393.15 -9.15 -45.02 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -7.31 Total: 2.42 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -1.40 Total: -6.70 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 0.19 Total: -40.41 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: 0.16 Total: -17.73 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.72 Total: 17.07 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.87 -9.15 -45.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075675574.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.405 kcal (2) G-P(sol) polarization free energy of solvation -35.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds