Wall clock time and date at job start Tue Mar 31 2020 15:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47189 * 2 1 4 4 C 1.52999 * 109.47524 * 120.00431 * 2 1 3 5 5 C 1.53001 * 109.47249 * 184.99741 * 4 2 1 6 6 N 1.46497 * 109.46761 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99874 * 180.02562 * 6 5 4 8 8 O 1.21281 * 119.99965 * 0.02562 * 7 6 5 9 9 C 1.50695 * 120.00461 * 179.97438 * 7 6 5 10 10 S 1.81000 * 109.47523 * 179.97438 * 9 7 6 11 11 C 1.76201 * 100.00020 * 180.02562 * 10 9 7 12 12 H 1.08005 * 120.00019 * 359.97438 * 11 10 9 13 13 C 1.38801 * 120.00038 * 180.02562 * 11 10 9 14 14 N 1.31637 * 119.99760 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00231 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46946 * 59.99532 * 15 13 11 17 17 H 1.48494 * 109.47024 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47088 * 300.00032 * 15 13 11 19 19 N 1.46507 * 109.47044 * 240.00445 * 2 1 3 20 20 C 1.34784 * 119.99771 * 84.99800 * 19 2 1 21 21 O 1.21610 * 119.99835 * 0.02562 * 20 19 2 22 22 C 1.47099 * 119.99647 * 179.97438 * 20 19 2 23 23 C 1.32994 * 119.99461 * 179.97438 * 22 20 19 24 24 C 1.50700 * 119.99776 * 180.02562 * 23 22 20 25 25 C 1.52999 * 117.49951 * 188.62129 * 24 23 22 26 26 C 1.52992 * 59.99997 * 252.51095 * 25 24 23 27 27 H 1.08996 * 109.47285 * 299.99210 * 1 2 3 28 28 H 1.08995 * 109.47222 * 59.99777 * 1 2 3 29 29 H 1.09003 * 109.46913 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47139 * 305.00437 * 4 2 1 31 31 H 1.09002 * 109.47060 * 64.99972 * 4 2 1 32 32 H 1.08993 * 109.47095 * 300.00365 * 5 4 2 33 33 H 1.09002 * 109.46901 * 60.00134 * 5 4 2 34 34 H 0.96998 * 120.00391 * 0.02562 * 6 5 4 35 35 H 1.08999 * 109.47642 * 300.00827 * 9 7 6 36 36 H 1.09002 * 109.46863 * 60.00114 * 9 7 6 37 37 H 0.96993 * 119.99545 * 180.02562 * 14 13 11 38 38 H 0.96999 * 120.00184 * 264.99652 * 19 2 1 39 39 H 1.07999 * 120.00303 * 359.97438 * 22 20 19 40 40 H 1.08000 * 120.00670 * 359.73039 * 23 22 20 41 41 H 1.09002 * 115.55035 * 334.33136 * 24 23 22 42 42 H 1.08994 * 117.49909 * 0.02562 * 25 24 23 43 43 H 1.09008 * 117.49509 * 145.02064 * 25 24 23 44 44 H 1.09010 * 117.50161 * 252.50993 * 26 25 24 45 45 H 1.09006 * 117.51741 * 107.48566 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5649 -0.6134 1.3135 6 7 4.0531 -1.3036 2.5099 7 6 5.3740 -1.3389 2.7756 8 8 6.1583 -0.7989 2.0245 9 6 5.8763 -2.0483 4.0066 10 16 7.6802 -1.9207 4.0827 11 6 7.9872 -2.8095 5.5728 12 1 7.1634 -3.2317 6.1293 13 6 9.2876 -2.9662 6.0321 14 7 10.2916 -2.4512 5.3541 15 14 9.6131 -3.9079 7.6122 16 1 9.1121 -5.2988 7.4717 17 1 11.0732 -3.9329 7.8817 18 1 8.9126 -3.2410 8.7391 19 7 2.0183 -0.6906 -1.1963 20 6 2.1469 -0.0180 -2.3573 21 8 1.8581 1.1620 -2.4116 22 6 2.6378 -0.7113 -3.5582 23 6 2.7643 -0.0478 -4.7039 24 6 3.2666 -0.7580 -5.9344 25 6 3.5822 0.0962 -7.1638 26 6 2.3422 -0.7998 -7.1528 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6054 -0.2620 2.1369 31 1 1.7517 -1.7716 1.2054 32 1 3.9994 -1.0728 0.4257 33 1 3.8532 0.4369 1.3572 34 1 3.4259 -1.7351 3.1109 35 1 5.4414 -1.5884 4.8940 36 1 5.5882 -3.0987 3.9636 37 1 11.2003 -2.5611 5.6749 38 1 2.2490 -1.6317 -1.1528 39 1 2.8955 -1.7589 -3.5096 40 1 2.5025 0.9988 -4.7536 41 1 3.8966 -1.6284 -5.7507 42 1 3.4270 1.1720 -7.0825 43 1 4.4203 -0.2119 -7.7891 44 1 2.3642 -1.6974 -7.7709 45 1 1.3705 -0.3138 -7.0643 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075675575.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:43 Heat of formation + Delta-G solvation = -49.831271 kcal Electronic energy + Delta-G solvation = -23661.569923 eV Core-core repulsion = 19998.904214 eV Total energy + Delta-G solvation = -3662.665709 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.17482 -39.15508 -38.03749 -36.79915 -34.42909 -32.95857 -32.43227 -31.64576 -30.05792 -28.13430 -25.50339 -25.13172 -23.38571 -22.84111 -21.68099 -20.89719 -20.34085 -19.83003 -17.88759 -17.57379 -16.81126 -16.20934 -16.03929 -15.89739 -15.32980 -15.04891 -14.85058 -14.80761 -14.29195 -13.98580 -13.92558 -13.74553 -13.21868 -13.01902 -12.89904 -12.57881 -12.35586 -12.17376 -12.08992 -11.93045 -11.67139 -11.56732 -11.52420 -11.25229 -11.05074 -11.04256 -10.93452 -10.77194 -10.13265 -9.83151 -9.57510 -9.42774 -9.28878 -9.06828 -8.89649 -8.24410 -6.50617 -6.21881 -3.92728 1.00157 2.88952 3.00846 3.01767 3.09330 3.22978 3.27038 3.30354 3.49168 3.68280 4.11510 4.20095 4.39541 4.45339 4.49413 4.54128 4.64452 4.73925 4.83459 4.95595 5.07587 5.09470 5.13077 5.16755 5.22539 5.31026 5.38534 5.40333 5.58223 5.60217 5.62650 5.63374 5.74717 5.85765 5.88745 5.93658 5.95773 6.07829 6.12614 6.23775 6.58953 7.24538 7.58648 7.68918 7.98903 8.34498 8.60602 9.23137 10.85484 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015843 B = 0.001848 C = 0.001692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.872412 B =15149.607133 C =16540.732350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 H 0.093 0.907 4 C -0.139 4.139 5 C 0.121 3.879 6 N -0.740 5.740 7 C 0.530 3.470 8 O -0.517 6.517 9 C -0.153 4.153 10 S -0.060 6.060 11 C -0.537 4.537 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 N -0.721 5.721 20 C 0.549 3.451 21 O -0.547 6.547 22 C -0.216 4.216 23 C -0.031 4.031 24 C -0.143 4.143 25 C -0.170 4.170 26 C -0.166 4.166 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.398 0.602 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.269 0.731 38 H 0.402 0.598 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.116 0.884 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.100 0.900 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.233 0.947 -18.641 29.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.111 0.889 4 C -0.178 4.178 5 C -0.003 4.003 6 N -0.395 5.395 7 C 0.316 3.684 8 O -0.391 6.391 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.685 4.685 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.200 1.200 17 H -0.208 1.208 18 H -0.199 1.199 19 N -0.373 5.373 20 C 0.339 3.661 21 O -0.426 6.426 22 C -0.236 4.236 23 C -0.051 4.051 24 C -0.161 4.161 25 C -0.207 4.207 26 C -0.203 4.203 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.231 0.769 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.236 0.764 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.134 0.866 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -20.920 2.732 -19.929 29.022 hybrid contribution -0.848 -2.021 2.292 3.171 sum -21.768 0.711 -17.637 28.025 Atomic orbital electron populations 1.22158 0.94819 1.02229 1.02784 1.20889 0.94131 0.97810 0.83169 0.88893 1.22125 0.95453 1.01922 0.98252 1.21259 0.92609 0.98037 0.88444 1.46001 1.07827 1.58627 1.27062 1.20325 0.81491 0.79732 0.86823 1.90712 1.54954 1.44289 1.49106 1.23530 1.06882 1.02530 0.97461 1.85416 0.92151 1.72731 1.33067 1.22830 0.95458 1.40282 1.09922 0.90976 1.24997 0.95042 0.95641 0.97899 1.70011 0.99409 1.42527 1.38322 0.86220 0.77374 0.79915 0.81964 1.19955 1.20802 1.19935 1.46003 1.67516 1.14129 1.09642 1.18551 0.77325 0.86591 0.83673 1.90786 1.50701 1.15801 1.85281 1.22498 1.06933 1.00924 0.93281 1.23067 0.90745 0.99441 0.91844 1.21358 1.04310 1.02155 0.88275 1.23026 0.99671 0.98219 0.99785 1.22984 0.95411 1.02568 0.99330 0.91402 0.91938 0.92369 0.89419 0.90534 0.91597 0.91550 0.76856 0.89223 0.89250 0.92118 0.76356 0.85488 0.85456 0.86571 0.88229 0.88125 0.88134 0.88381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 9.48 37.16 0.35 -0.77 16 2 C 0.15 1.16 2.57 -67.93 -0.17 0.99 16 3 H 0.09 0.95 7.58 -51.93 -0.39 0.55 16 4 C -0.14 -0.97 4.87 -26.73 -0.13 -1.10 16 5 C 0.12 1.34 5.56 -4.04 -0.02 1.32 16 6 N -0.74 -9.41 5.56 -60.30 -0.33 -9.74 16 7 C 0.53 9.83 7.85 -10.99 -0.09 9.74 16 8 O -0.52 -11.86 15.86 5.56 0.09 -11.77 16 9 C -0.15 -3.06 6.16 36.00 0.22 -2.84 16 10 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 11 C -0.54 -15.27 9.50 30.94 0.29 -14.98 16 12 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 13 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 14 N -0.87 -26.18 13.22 55.49 0.73 -25.45 16 15 Si 0.92 21.34 29.55 -169.99 -5.02 16.31 16 16 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 N -0.72 -5.86 4.53 -54.99 -0.25 -6.11 16 20 C 0.55 5.79 7.73 -12.66 -0.10 5.70 16 21 O -0.55 -7.75 15.88 5.27 0.08 -7.66 16 22 C -0.22 -1.79 9.67 -37.81 -0.37 -2.16 16 23 C -0.03 -0.26 9.24 -36.13 -0.33 -0.59 16 24 C -0.14 -0.91 6.01 -91.77 -0.55 -1.46 16 25 C -0.17 -0.95 10.23 -26.74 -0.27 -1.22 16 26 C -0.17 -0.87 10.23 -26.74 -0.27 -1.14 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.80 7.75 -51.93 -0.40 0.39 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.40 3.74 8.47 -40.82 -0.35 3.40 16 35 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 36 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 37 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.40 2.39 8.59 -40.82 -0.35 2.04 16 39 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.13 1.17 7.49 -52.49 -0.39 0.77 16 41 H 0.12 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.10 0.47 8.14 -51.92 -0.42 0.05 16 44 H 0.10 0.42 8.14 -51.92 -0.42 -0.01 16 45 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 400.99 15.07 6.04 6.04 Total: -1.00 -36.91 400.99 -9.76 -46.66 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -7.35 Total: 2.08 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -1.54 Total: -6.51 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.15 Total: -41.30 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: 0.17 Total: -19.44 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.91 -9.76 -46.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075675575.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.169 kcal (2) G-P(sol) polarization free energy of solvation -36.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds