Wall clock time and date at job start Tue Mar 31 2020 15:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.46666 * 2 1 4 4 C 1.53001 * 109.47170 * 120.00343 * 2 1 3 5 5 C 1.53005 * 109.46706 * 185.00007 * 4 2 1 6 6 N 1.46507 * 109.46508 * 179.97438 * 5 4 2 7 7 C 1.34775 * 119.99745 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99984 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.00328 * 179.97438 * 7 6 5 10 10 S 1.80994 * 109.47378 * 180.02562 * 9 7 6 11 11 C 1.76206 * 100.00074 * 180.02562 * 10 9 7 12 12 H 1.07998 * 120.00013 * 359.97438 * 11 10 9 13 13 C 1.38795 * 120.00296 * 180.02562 * 11 10 9 14 14 N 1.31635 * 119.99870 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00375 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47174 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47316 * 119.99733 * 15 13 11 18 18 H 1.48497 * 109.47271 * 240.00167 * 15 13 11 19 19 N 1.46499 * 109.47188 * 240.00586 * 2 1 3 20 20 C 1.34778 * 120.00494 * 84.99718 * 19 2 1 21 21 O 1.21617 * 119.99507 * 359.97438 * 20 19 2 22 22 C 1.47101 * 120.00193 * 180.02562 * 20 19 2 23 23 C 1.32874 * 124.76773 * 179.97438 * 22 20 19 24 24 C 1.51119 * 110.80017 * 179.97438 * 23 22 20 25 25 C 1.54574 * 104.83668 * 343.43160 * 24 23 22 26 26 C 1.51112 * 124.62052 * 359.97438 * 22 20 19 27 27 H 1.08999 * 109.47552 * 60.00032 * 1 2 3 28 28 H 1.09003 * 109.47193 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47640 * 299.99664 * 1 2 3 30 30 H 1.09004 * 109.47015 * 304.99822 * 4 2 1 31 31 H 1.08995 * 109.47330 * 65.00150 * 4 2 1 32 32 H 1.08995 * 109.47167 * 299.99881 * 5 4 2 33 33 H 1.09000 * 109.46771 * 60.00309 * 5 4 2 34 34 H 0.96997 * 120.00211 * 0.02562 * 6 5 4 35 35 H 1.09005 * 109.47010 * 300.00622 * 9 7 6 36 36 H 1.09002 * 109.46746 * 59.99847 * 9 7 6 37 37 H 0.96998 * 119.99816 * 179.97438 * 14 13 11 38 38 H 0.97008 * 119.99678 * 265.00279 * 19 2 1 39 39 H 1.07998 * 124.58369 * 0.02562 * 23 22 20 40 40 H 1.09003 * 110.36283 * 224.59007 * 24 23 22 41 41 H 1.09000 * 110.45170 * 102.32072 * 24 23 22 42 42 H 1.08994 * 110.98601 * 266.91919 * 25 24 23 43 43 H 1.09005 * 110.98070 * 143.12853 * 25 24 23 44 44 H 1.09002 * 110.36615 * 77.73535 * 26 22 20 45 45 H 1.08995 * 110.36540 * 315.52472 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6133 1.3135 6 7 4.0531 -1.3035 2.5101 7 6 5.3740 -1.3387 2.7758 8 8 6.1582 -0.7987 2.0247 9 6 5.8763 -2.0481 4.0068 10 16 7.6800 -1.9192 4.0837 11 6 7.9870 -2.8082 5.5737 12 1 7.1634 -3.2312 6.1297 13 6 9.2873 -2.9641 6.0336 14 7 10.2912 -2.4482 5.3562 15 14 9.6128 -3.9059 7.6135 16 1 8.3252 -4.3811 8.1807 17 1 10.4867 -5.0710 7.3242 18 1 10.2849 -3.0138 8.5920 19 7 2.0183 -0.6905 -1.1962 20 6 2.1470 -0.0181 -2.3572 21 8 1.8573 1.1618 -2.4118 22 6 2.6369 -0.7116 -3.5584 23 6 2.7992 -0.1431 -4.7484 24 6 3.3182 -1.1437 -5.7549 25 6 3.8539 -2.3185 -4.9051 26 6 3.0252 -2.1711 -3.6088 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6054 -0.2618 2.1370 31 1 1.7517 -1.7715 1.2055 32 1 3.9994 -1.0727 0.4258 33 1 3.8531 0.4370 1.3573 34 1 3.4258 -1.7351 3.1110 35 1 5.4413 -1.5882 4.8941 36 1 5.5882 -3.0985 3.9638 37 1 11.1999 -2.5567 5.6778 38 1 2.2490 -1.6317 -1.1527 39 1 2.5895 0.8937 -4.9661 40 1 4.1224 -0.7051 -6.3457 41 1 2.5119 -1.4827 -6.4054 42 1 4.9185 -2.2004 -4.7030 43 1 3.6539 -3.2740 -5.3900 44 1 2.1354 -2.7991 -3.6542 45 1 3.6295 -2.4330 -2.7403 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075675717.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:31 Heat of formation + Delta-G solvation = -78.425492 kcal Electronic energy + Delta-G solvation = -24332.445344 eV Core-core repulsion = 20668.539696 eV Total energy + Delta-G solvation = -3663.905648 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.40994 -39.20406 -38.24009 -36.69212 -34.44126 -32.43865 -32.06742 -30.21688 -29.50082 -28.60496 -28.13407 -25.50509 -23.89501 -22.73676 -21.52833 -20.86434 -20.31654 -19.08598 -17.85505 -17.46316 -16.75335 -16.23716 -16.02190 -15.92398 -15.35725 -15.04461 -14.81446 -14.73516 -14.14674 -13.96890 -13.74581 -13.27724 -13.23910 -13.10385 -12.88808 -12.58956 -12.45811 -12.28581 -12.15320 -12.04326 -11.66350 -11.61085 -11.55144 -11.52203 -11.25557 -11.07937 -11.02917 -10.76399 -10.14634 -9.81725 -9.49855 -9.38996 -9.21961 -9.08804 -8.90134 -8.23986 -6.51048 -6.22718 -3.93318 1.06715 2.89970 3.01264 3.04467 3.08979 3.20716 3.27269 3.31689 3.67915 4.10929 4.17289 4.19313 4.45146 4.53299 4.61249 4.67096 4.74173 4.89277 5.06283 5.09002 5.12510 5.21512 5.23965 5.26536 5.30555 5.38007 5.39114 5.42427 5.57755 5.60299 5.62264 5.74602 5.79192 5.85492 5.88373 5.92820 5.94912 6.12267 6.18287 6.22133 6.58399 7.23568 7.58850 7.68521 7.97660 8.34438 8.60222 9.22681 10.84774 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016643 B = 0.002093 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.988877 B =13372.045709 C =14514.076995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 H 0.093 0.907 4 C -0.139 4.139 5 C 0.121 3.879 6 N -0.740 5.740 7 C 0.530 3.470 8 O -0.516 6.516 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 N -0.721 5.721 20 C 0.569 3.431 21 O -0.542 6.542 22 C -0.197 4.197 23 C -0.071 4.071 24 C -0.108 4.108 25 C -0.124 4.124 26 C -0.092 4.092 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.398 0.602 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.268 0.732 38 H 0.401 0.599 39 H 0.137 0.863 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.835 -0.434 -17.220 27.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.112 0.888 4 C -0.178 4.178 5 C -0.003 4.003 6 N -0.395 5.395 7 C 0.316 3.684 8 O -0.390 6.390 9 C -0.304 4.304 10 S 0.165 5.835 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.137 4.137 14 N -0.503 5.503 15 Si 0.746 3.254 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 N -0.372 5.372 20 C 0.358 3.642 21 O -0.421 6.421 22 C -0.200 4.200 23 C -0.090 4.090 24 C -0.145 4.145 25 C -0.161 4.161 26 C -0.129 4.129 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.231 0.769 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.236 0.764 39 H 0.155 0.845 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -20.529 1.342 -18.507 27.672 hybrid contribution -0.905 -1.867 2.257 3.066 sum -21.434 -0.525 -16.250 26.903 Atomic orbital electron populations 1.22160 0.94779 1.02240 1.02814 1.20900 0.94167 0.97824 0.83120 0.88846 1.22129 0.95463 1.01920 0.98253 1.21259 0.92603 0.98052 0.88429 1.46002 1.07831 1.58627 1.27052 1.20325 0.81488 0.79736 0.86826 1.90712 1.54950 1.44277 1.49102 1.23528 1.06862 1.02528 0.97458 1.85424 0.92188 1.72713 1.33137 1.22904 0.95487 1.40055 1.09846 0.90876 1.25003 0.95066 0.95673 0.97928 1.70031 0.99365 1.42626 1.38244 0.86107 0.78392 0.79256 0.81678 1.19627 1.20563 1.20566 1.46004 1.67503 1.14132 1.09594 1.17961 0.77101 0.86215 0.82955 1.90795 1.50511 1.15596 1.85176 1.21890 1.06672 0.97091 0.94378 1.24143 0.92109 0.99394 0.93402 1.21495 1.00899 0.94650 0.97468 1.22432 1.00245 0.98421 0.95048 1.21245 0.99999 0.92429 0.99237 0.91921 0.92369 0.91361 0.89362 0.90543 0.91646 0.91526 0.76856 0.89225 0.89248 0.92228 0.76393 0.84477 0.90076 0.89641 0.90507 0.90439 0.90352 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 9.48 37.16 0.35 -0.78 16 2 C 0.14 1.18 2.57 -67.93 -0.17 1.00 16 3 H 0.09 0.96 7.58 -51.93 -0.39 0.56 16 4 C -0.14 -0.97 4.87 -26.73 -0.13 -1.11 16 5 C 0.12 1.34 5.56 -4.04 -0.02 1.32 16 6 N -0.74 -9.38 5.56 -60.29 -0.33 -9.71 16 7 C 0.53 9.79 7.85 -10.99 -0.09 9.71 16 8 O -0.52 -11.82 15.86 5.56 0.09 -11.73 16 9 C -0.15 -3.05 6.16 36.00 0.22 -2.83 16 10 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 11 C -0.53 -15.18 9.50 30.94 0.29 -14.89 16 12 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 13 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 14 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 15 Si 0.92 21.33 29.55 -169.99 -5.02 16.31 16 16 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 N -0.72 -6.09 4.52 -54.99 -0.25 -6.34 16 20 C 0.57 6.27 7.76 -12.66 -0.10 6.17 16 21 O -0.54 -7.90 16.44 5.26 0.09 -7.81 16 22 C -0.20 -1.78 6.11 -102.68 -0.63 -2.40 16 23 C -0.07 -0.58 10.45 -35.95 -0.38 -0.96 16 24 C -0.11 -0.63 6.80 -26.85 -0.18 -0.81 16 25 C -0.12 -0.73 7.16 -25.09 -0.18 -0.91 16 26 C -0.09 -0.61 6.02 -26.86 -0.16 -0.77 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.79 7.75 -51.93 -0.40 0.39 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.40 3.73 8.47 -40.82 -0.35 3.38 16 35 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 36 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 37 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.40 2.61 7.61 -40.82 -0.31 2.30 16 39 H 0.14 1.15 8.04 -52.49 -0.42 0.73 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.08 0.50 7.83 -51.93 -0.41 0.09 16 LS Contribution 392.06 15.07 5.91 5.91 Total: -1.00 -36.91 392.06 -9.59 -46.50 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -7.32 Total: 1.46 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -1.27 Total: -5.28 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: 0.15 Total: -41.47 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: 0.17 Total: -19.55 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.91 -9.59 -46.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075675717.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.925 kcal (2) G-P(sol) polarization free energy of solvation -36.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds