Wall clock time and date at job start Tue Mar 31 2020 15:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.52999 * 109.47451 * 184.99880 * 4 2 1 6 6 N 1.46500 * 109.47120 * 180.02562 * 5 4 2 7 7 C 1.34777 * 120.00097 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99903 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00178 * 179.97438 * 7 6 5 10 10 S 1.80995 * 109.47230 * 179.97438 * 9 7 6 11 11 C 1.76197 * 100.00178 * 180.02562 * 10 9 7 12 12 H 1.08000 * 120.00117 * 359.97438 * 11 10 9 13 13 C 1.38801 * 120.00090 * 180.02562 * 11 10 9 14 14 N 1.31628 * 119.99970 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99942 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47184 * 89.99766 * 15 13 11 17 17 H 1.48497 * 109.47073 * 209.99708 * 15 13 11 18 18 H 1.48499 * 109.47300 * 329.99843 * 15 13 11 19 19 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 20 20 C 1.34780 * 119.99910 * 85.00011 * 19 2 1 21 21 O 1.21614 * 119.99756 * 0.02562 * 20 19 2 22 22 C 1.47100 * 120.00123 * 180.02562 * 20 19 2 23 23 C 1.32989 * 119.99807 * 180.02562 * 22 20 19 24 24 C 1.51405 * 136.31997 * 359.62373 * 23 22 20 25 25 C 1.53376 * 87.52006 * 206.05858 * 24 23 22 26 26 C 1.51412 * 136.31399 * 179.97438 * 23 22 20 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 30 30 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 31 31 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 32 32 H 1.08996 * 109.47443 * 300.00108 * 5 4 2 33 33 H 1.09000 * 109.46961 * 60.00367 * 5 4 2 34 34 H 0.97004 * 120.00316 * 359.97438 * 6 5 4 35 35 H 1.09000 * 109.47343 * 299.99792 * 9 7 6 36 36 H 1.09000 * 109.46969 * 59.99899 * 9 7 6 37 37 H 0.97003 * 119.99822 * 180.02562 * 14 13 11 38 38 H 0.96994 * 119.99975 * 265.00388 * 19 2 1 39 39 H 1.07996 * 119.99983 * 359.97438 * 22 20 19 40 40 H 1.08995 * 113.55986 * 320.64452 * 24 23 22 41 41 H 1.09004 * 113.55841 * 91.37640 * 24 23 22 42 42 H 1.09001 * 113.97194 * 220.29357 * 25 24 23 43 43 H 1.09001 * 113.59921 * 88.79514 * 25 24 23 44 44 H 1.09003 * 113.55783 * 268.62984 * 26 23 22 45 45 H 1.09001 * 113.55873 * 39.35880 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3137 6 7 4.0532 -1.3043 2.5096 7 6 5.3740 -1.3398 2.7753 8 8 6.1583 -0.7992 2.0246 9 6 5.8764 -2.0501 4.0058 10 16 7.6802 -1.9226 4.0819 11 6 7.9873 -2.8125 5.5713 12 1 7.1636 -3.2351 6.1275 13 6 9.2877 -2.9695 6.0305 14 7 10.2916 -2.4540 5.3529 15 14 9.6132 -3.9123 7.6099 16 1 9.8147 -5.3497 7.2958 17 1 10.8315 -3.3735 8.2659 18 1 8.4520 -3.7634 8.5235 19 7 2.0184 -0.6906 -1.1961 20 6 2.1471 -0.0183 -2.3571 21 8 1.8583 1.1618 -2.4116 22 6 2.6370 -0.7119 -3.5583 23 6 2.7645 -0.0483 -4.7037 24 6 2.5189 1.3669 -5.1825 25 6 2.3238 0.7863 -6.5887 26 6 3.2142 -0.3724 -6.1127 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.6054 -0.2617 2.1370 31 1 1.7517 -1.7714 1.2056 32 1 3.9995 -1.0728 0.4261 33 1 3.8532 0.4370 1.3574 34 1 3.4259 -1.7358 3.1107 35 1 5.4415 -1.5908 4.8935 36 1 5.5883 -3.1005 3.9619 37 1 11.2005 -2.5640 5.6736 38 1 2.2490 -1.6317 -1.1525 39 1 2.8939 -1.7597 -3.5098 40 1 1.6159 1.8161 -4.7691 41 1 3.3917 2.0140 -5.0955 42 1 2.7695 1.3869 -7.3815 43 1 1.2956 0.4933 -6.8010 44 1 4.2777 -0.2022 -6.2806 45 1 2.8814 -1.3498 -6.4622 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075675755.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:37 Heat of formation + Delta-G solvation = -48.667683 kcal Electronic energy + Delta-G solvation = -23967.144512 eV Core-core repulsion = 20304.529260 eV Total energy + Delta-G solvation = -3662.615252 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.25304 -39.22179 -38.70835 -36.69001 -34.40252 -32.43456 -32.26805 -30.77232 -29.91771 -28.12462 -26.12938 -25.49895 -24.30941 -23.23123 -21.64843 -20.85887 -20.30606 -18.56084 -17.83526 -17.34767 -16.60503 -16.17425 -15.99554 -15.82886 -15.50690 -15.12886 -14.80966 -14.73676 -14.29568 -14.01362 -13.95408 -13.72002 -13.19957 -12.91960 -12.80863 -12.59146 -12.41959 -12.26266 -12.16225 -12.08406 -11.62427 -11.52229 -11.38085 -11.24235 -11.06833 -11.02887 -10.87493 -10.76469 -9.90736 -9.82209 -9.58609 -9.42250 -9.25386 -9.07556 -8.88878 -8.23885 -6.50538 -6.22075 -3.92734 1.07760 2.89840 3.02106 3.09712 3.10527 3.21824 3.27408 3.31437 3.68803 3.99643 4.13649 4.19950 4.37206 4.47464 4.56074 4.73283 4.75169 4.84736 5.08445 5.10501 5.13057 5.15461 5.23362 5.27386 5.32131 5.32383 5.40146 5.43988 5.56140 5.62082 5.65579 5.75709 5.84527 5.86905 5.88952 5.90502 5.95181 6.12901 6.25267 6.29752 6.59652 7.29784 7.58977 7.69510 8.05033 8.34665 8.61124 9.23147 10.85337 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.019165 B = 0.001871 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.656005 B =14962.471274 C =16072.852150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 H 0.093 0.907 4 C -0.139 4.139 5 C 0.121 3.879 6 N -0.740 5.740 7 C 0.530 3.470 8 O -0.517 6.517 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.536 4.536 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 N -0.723 5.723 20 C 0.553 3.447 21 O -0.542 6.542 22 C -0.202 4.202 23 C -0.060 4.060 24 C -0.106 4.106 25 C -0.143 4.143 26 C -0.110 4.110 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.398 0.602 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.268 0.732 38 H 0.401 0.599 39 H 0.133 0.867 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.103 0.897 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.334 2.071 -18.251 28.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.111 0.889 4 C -0.178 4.178 5 C -0.003 4.003 6 N -0.395 5.395 7 C 0.316 3.684 8 O -0.391 6.391 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.684 4.684 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.197 1.197 19 N -0.375 5.375 20 C 0.343 3.657 21 O -0.421 6.421 22 C -0.223 4.223 23 C -0.062 4.062 24 C -0.143 4.143 25 C -0.181 4.181 26 C -0.146 4.146 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.231 0.769 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.236 0.764 39 H 0.150 0.850 40 H 0.104 0.896 41 H 0.117 0.883 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.121 0.879 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -21.029 3.869 -19.548 28.971 hybrid contribution -0.867 -2.092 2.289 3.220 sum -21.896 1.777 -17.259 27.936 Atomic orbital electron populations 1.22159 0.94891 1.02186 1.02734 1.20864 0.94061 0.97785 0.83170 0.88930 1.22124 0.95439 1.01917 0.98273 1.21257 0.92623 0.98005 0.88437 1.46006 1.07818 1.58594 1.27102 1.20322 0.81497 0.79746 0.86808 1.90711 1.54959 1.44290 1.49105 1.23530 1.06866 1.02528 0.97475 1.85416 0.92171 1.72666 1.33157 1.22868 0.95473 1.40144 1.09928 0.90927 1.24997 0.95054 0.95645 0.97912 1.70019 0.99376 1.42506 1.38358 0.86164 0.77971 0.79607 0.81725 1.20278 1.20742 1.19705 1.45990 1.67799 1.14096 1.09634 1.18413 0.77368 0.86577 0.83371 1.90771 1.50481 1.15678 1.85160 1.21577 1.08588 1.00758 0.91395 1.23497 0.91253 0.98088 0.93318 1.22231 1.03507 0.94187 0.94349 1.22739 1.00255 0.97822 0.97236 1.22378 1.00885 0.99846 0.91533 0.92411 0.91950 0.91463 0.89463 0.90559 0.91593 0.91566 0.76863 0.89225 0.89250 0.92177 0.76448 0.84959 0.89563 0.88292 0.90333 0.89800 0.87926 0.90358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 9.48 37.16 0.35 -0.78 16 2 C 0.15 1.18 2.57 -67.93 -0.17 1.01 16 3 H 0.09 0.95 7.58 -51.93 -0.39 0.55 16 4 C -0.14 -0.98 4.87 -26.73 -0.13 -1.11 16 5 C 0.12 1.35 5.56 -4.04 -0.02 1.33 16 6 N -0.74 -9.45 5.56 -60.30 -0.33 -9.78 16 7 C 0.53 9.85 7.85 -10.99 -0.09 9.76 16 8 O -0.52 -11.87 15.86 5.56 0.09 -11.79 16 9 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 10 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 11 C -0.54 -15.26 9.50 30.94 0.29 -14.96 16 12 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 13 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 14 N -0.87 -26.19 13.22 55.49 0.73 -25.45 16 15 Si 0.92 21.36 29.55 -169.99 -5.02 16.33 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 N -0.72 -5.96 4.53 -54.99 -0.25 -6.21 16 20 C 0.55 5.92 7.73 -12.66 -0.10 5.82 16 21 O -0.54 -7.54 14.81 5.27 0.08 -7.47 16 22 C -0.20 -1.78 10.03 -37.81 -0.38 -2.16 16 23 C -0.06 -0.51 6.93 -100.48 -0.70 -1.21 16 24 C -0.11 -0.89 6.99 -27.56 -0.19 -1.08 16 25 C -0.14 -0.85 8.17 -26.19 -0.21 -1.07 16 26 C -0.11 -0.66 7.96 -27.39 -0.22 -0.88 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.80 7.75 -51.93 -0.40 0.40 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.40 3.77 8.47 -40.82 -0.35 3.42 16 35 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 36 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 37 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.40 2.45 8.59 -40.82 -0.35 2.10 16 39 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.09 0.85 7.49 -51.93 -0.39 0.46 16 41 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 394.60 15.07 5.95 5.95 Total: -1.00 -36.81 394.60 -9.76 -46.56 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -7.34 Total: 1.91 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -1.44 Total: -6.19 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 0.15 Total: -41.45 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: 0.17 Total: -19.25 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.81 -9.76 -46.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075675755.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.106 kcal (2) G-P(sol) polarization free energy of solvation -36.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds