Wall clock time and date at job start Tue Mar 31 2020 15:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.52999 * 109.47451 * 184.99880 * 4 2 1 6 6 N 1.46500 * 109.47120 * 180.02562 * 5 4 2 7 7 C 1.34777 * 120.00097 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99903 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00178 * 179.97438 * 7 6 5 10 10 S 1.80995 * 109.47230 * 179.97438 * 9 7 6 11 11 C 1.76197 * 100.00178 * 180.02562 * 10 9 7 12 12 H 1.08000 * 120.00117 * 359.97438 * 11 10 9 13 13 C 1.38801 * 120.00090 * 180.02562 * 11 10 9 14 14 N 1.31634 * 119.99817 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 119.99957 * 359.97438 * 13 11 10 16 16 H 1.48492 * 109.47225 * 90.00340 * 15 13 11 17 17 H 1.48502 * 109.46919 * 210.00471 * 15 13 11 18 18 H 1.48502 * 109.47184 * 329.99902 * 15 13 11 19 19 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 20 20 C 1.34780 * 119.99910 * 85.00011 * 19 2 1 21 21 O 1.21281 * 119.99723 * 0.02562 * 20 19 2 22 22 C 1.50693 * 120.00182 * 180.02562 * 20 19 2 23 23 C 1.54641 * 111.03531 * 292.02188 * 22 20 19 24 24 C 1.51100 * 104.72548 * 217.33266 * 23 22 20 25 25 C 1.30521 * 111.10415 * 16.43883 * 24 23 22 26 26 C 1.51104 * 111.10762 * 359.97438 * 25 24 23 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 30 30 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 31 31 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 32 32 H 1.08996 * 109.47443 * 300.00108 * 5 4 2 33 33 H 1.09000 * 109.46961 * 60.00367 * 5 4 2 34 34 H 0.97004 * 120.00316 * 359.97438 * 6 5 4 35 35 H 1.09000 * 109.47343 * 299.99792 * 9 7 6 36 36 H 1.09000 * 109.46969 * 59.99899 * 9 7 6 37 37 H 0.96996 * 119.99609 * 179.97438 * 14 13 11 38 38 H 0.96994 * 119.99975 * 265.00388 * 19 2 1 39 39 H 1.08999 * 110.91614 * 56.02729 * 22 20 19 40 40 H 1.09005 * 110.38384 * 336.14731 * 23 22 20 41 41 H 1.08997 * 110.38875 * 98.51780 * 23 22 20 42 42 H 1.08000 * 124.44771 * 196.44922 * 24 23 22 43 43 H 1.08002 * 124.45047 * 180.02562 * 25 24 23 44 44 H 1.08994 * 110.38969 * 224.75641 * 26 25 24 45 45 H 1.09001 * 110.38772 * 102.37156 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3137 6 7 4.0532 -1.3043 2.5096 7 6 5.3740 -1.3398 2.7753 8 8 6.1583 -0.7992 2.0246 9 6 5.8764 -2.0501 4.0058 10 16 7.6802 -1.9226 4.0819 11 6 7.9873 -2.8125 5.5713 12 1 7.1636 -3.2351 6.1275 13 6 9.2877 -2.9695 6.0305 14 7 9.5170 -3.6339 7.1434 15 14 10.7124 -2.2379 5.0689 16 1 10.9746 -0.8567 5.5468 17 1 11.9253 -3.0704 5.2712 18 1 10.3697 -2.2053 3.6244 19 7 2.0184 -0.6906 -1.1961 20 6 2.1471 -0.0183 -2.3571 21 8 1.8591 1.1586 -2.4115 22 6 2.6490 -0.7288 -3.5877 23 6 4.1351 -1.1269 -3.4315 24 6 4.7342 -0.9206 -4.8032 25 6 3.9601 -0.1786 -5.5474 26 6 2.7153 0.2333 -4.7963 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.6054 -0.2617 2.1370 31 1 1.7517 -1.7714 1.2056 32 1 3.9995 -1.0728 0.4261 33 1 3.8532 0.4370 1.3574 34 1 3.4259 -1.7358 3.1107 35 1 5.4415 -1.5908 4.8935 36 1 5.5883 -3.1005 3.9619 37 1 10.4258 -3.7439 7.4641 38 1 2.2490 -1.6317 -1.1525 39 1 2.0321 -1.5985 -3.8136 40 1 4.6260 -0.4828 -2.7019 41 1 4.2190 -2.1720 -3.1337 42 1 5.6787 -1.3332 -5.1257 43 1 4.1799 0.1033 -6.5666 44 1 1.8342 0.1131 -5.4266 45 1 2.8015 1.2650 -4.4553 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075675761.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:34 Heat of formation + Delta-G solvation = -73.833981 kcal Electronic energy + Delta-G solvation = -24557.727332 eV Core-core repulsion = 20894.020787 eV Total energy + Delta-G solvation = -3663.706545 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.67593 -39.35541 -38.22857 -36.71148 -34.55208 -32.45728 -32.20223 -30.38409 -29.48274 -28.47583 -28.24966 -25.63724 -23.99987 -22.92044 -21.29085 -20.47745 -20.23065 -19.12573 -17.94099 -17.65225 -16.81914 -16.47797 -16.35198 -16.03342 -15.49090 -15.02925 -14.98226 -14.72651 -14.24772 -13.87403 -13.82748 -13.39531 -13.20748 -12.95944 -12.84907 -12.81132 -12.50161 -12.41787 -12.32002 -12.08484 -11.74098 -11.70131 -11.55106 -11.48741 -11.32336 -11.27312 -11.02233 -10.62442 -10.08902 -9.87549 -9.59447 -9.45210 -9.22766 -9.04964 -8.99435 -8.52168 -6.93974 -6.30699 -4.02609 1.92548 2.31047 2.73300 2.78285 2.94126 3.27093 3.32660 3.49222 3.61726 4.07290 4.20121 4.31530 4.35733 4.45830 4.52450 4.66447 4.72742 4.79328 4.92192 5.02481 5.04931 5.08401 5.19410 5.21972 5.30518 5.31626 5.32701 5.40990 5.50228 5.52858 5.62259 5.69049 5.75069 5.77778 5.79636 5.84678 5.98132 6.13919 6.19532 6.46596 6.52349 7.13193 7.55683 7.89125 7.92383 8.39662 8.45229 9.15499 10.78494 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015476 B = 0.002307 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.780024 B =12135.342219 C =13618.585771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.093 0.907 4 C -0.140 4.140 5 C 0.121 3.879 6 N -0.738 5.738 7 C 0.529 3.471 8 O -0.518 6.518 9 C -0.124 4.124 10 S -0.142 6.142 11 C -0.522 4.522 12 H 0.088 0.912 13 C 0.095 3.905 14 N -0.880 5.880 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 N -0.725 5.725 20 C 0.526 3.474 21 O -0.537 6.537 22 C -0.118 4.118 23 C -0.091 4.091 24 C -0.166 4.166 25 C -0.166 4.166 26 C -0.087 4.087 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.399 0.601 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.271 0.729 38 H 0.401 0.599 39 H 0.105 0.895 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.128 0.872 43 H 0.127 0.873 44 H 0.073 0.927 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.202 3.416 -20.543 29.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.111 0.889 4 C -0.178 4.178 5 C -0.003 4.003 6 N -0.393 5.393 7 C 0.315 3.685 8 O -0.393 6.393 9 C -0.275 4.275 10 S 0.084 5.916 11 C -0.669 4.669 12 H 0.106 0.894 13 C -0.113 4.113 14 N -0.517 5.517 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.159 1.159 19 N -0.377 5.377 20 C 0.312 3.688 21 O -0.413 6.413 22 C -0.139 4.139 23 C -0.128 4.128 24 C -0.184 4.184 25 C -0.184 4.184 26 C -0.124 4.124 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.233 0.767 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.236 0.764 39 H 0.123 0.877 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.146 0.854 43 H 0.144 0.856 44 H 0.092 0.908 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -18.973 5.115 -21.687 29.265 hybrid contribution -0.345 -1.202 1.081 1.653 sum -19.318 3.913 -20.606 28.515 Atomic orbital electron populations 1.22160 0.94765 1.02266 1.02832 1.20895 0.94188 0.97768 0.83194 0.88934 1.22130 0.95341 1.02011 0.98330 1.21268 0.92725 0.97980 0.88328 1.45965 1.07725 1.58460 1.27145 1.20296 0.81645 0.79765 0.86762 1.90708 1.54996 1.44430 1.49145 1.23279 1.03080 1.03241 0.97888 1.84806 0.98083 1.73868 1.34814 1.22313 0.97285 1.39526 1.07796 0.89384 1.24720 0.98322 0.93892 0.94414 1.69939 1.21732 1.39456 1.20537 0.86730 0.82137 0.79903 0.83055 1.19199 1.19934 1.15926 1.46123 1.67691 1.14193 1.09694 1.20392 0.76854 0.87151 0.84365 1.90697 1.49736 1.15965 1.84905 1.22194 0.98145 0.99861 0.93712 1.21339 0.92211 1.02344 0.96931 1.23227 0.99937 1.00119 0.95106 1.23296 0.96709 0.98883 0.99472 1.21282 0.96861 1.00396 0.93893 0.92336 0.91919 0.91379 0.89363 0.90465 0.91579 0.91524 0.76669 0.88499 0.88472 0.91929 0.76410 0.87720 0.89906 0.90200 0.85416 0.85556 0.90830 0.88724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 9.48 37.16 0.35 -0.66 16 2 C 0.14 1.02 2.57 -67.93 -0.17 0.85 16 3 H 0.09 0.86 7.58 -51.93 -0.39 0.46 16 4 C -0.14 -0.85 4.87 -26.73 -0.13 -0.98 16 5 C 0.12 1.20 5.56 -4.04 -0.02 1.18 16 6 N -0.74 -8.54 5.56 -60.30 -0.33 -8.87 16 7 C 0.53 9.07 7.85 -10.99 -0.09 8.98 16 8 O -0.52 -11.02 15.86 5.56 0.09 -10.93 16 9 C -0.12 -2.33 6.16 36.01 0.22 -2.11 16 10 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 11 C -0.52 -14.90 10.04 30.94 0.31 -14.59 16 12 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 13 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 14 N -0.88 -26.40 13.97 55.49 0.78 -25.63 16 15 Si 0.86 21.70 27.74 -169.99 -4.71 16.98 16 16 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 17 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 18 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 19 N -0.72 -5.04 4.53 -53.81 -0.24 -5.28 16 20 C 0.53 4.86 7.03 -10.99 -0.08 4.78 16 21 O -0.54 -6.97 15.17 5.56 0.08 -6.89 16 22 C -0.12 -0.86 3.55 -90.06 -0.32 -1.18 16 23 C -0.09 -0.69 6.37 -26.82 -0.17 -0.86 16 24 C -0.17 -1.28 10.77 -35.70 -0.38 -1.66 16 25 C -0.17 -1.24 10.77 -35.69 -0.38 -1.63 16 26 C -0.09 -0.70 6.18 -26.83 -0.17 -0.87 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.71 7.75 -51.93 -0.40 0.30 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.40 3.38 8.47 -40.82 -0.35 3.03 16 35 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 36 H 0.10 1.68 8.14 -51.91 -0.42 1.25 16 37 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.40 1.97 8.60 -40.82 -0.35 1.62 16 39 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.76 7.88 -51.93 -0.41 0.35 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.09 0.95 6.96 -51.93 -0.36 0.59 16 LS Contribution 388.29 15.07 5.85 5.85 Total: -1.00 -35.98 388.29 -8.95 -44.93 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -7.34 Total: 1.46 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -1.13 Total: -6.06 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.20 Total: -39.78 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: 0.17 Total: -17.82 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.71 Total: 16.98 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.98 -8.95 -44.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075675761.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.904 kcal (2) G-P(sol) polarization free energy of solvation -35.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds