Wall clock time and date at job start Tue Mar 31 2020 15:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47638 * 2 1 4 4 C 1.53001 * 109.47506 * 120.00075 * 2 1 3 5 5 C 1.52996 * 109.47486 * 184.99569 * 4 2 1 6 6 N 1.46499 * 109.47369 * 180.02562 * 5 4 2 7 7 C 1.34776 * 120.00217 * 179.97438 * 6 5 4 8 8 O 1.21282 * 119.99940 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00035 * 179.97438 * 7 6 5 10 10 S 1.81000 * 109.47349 * 180.02562 * 9 7 6 11 11 C 1.76194 * 100.00068 * 180.02562 * 10 9 7 12 12 H 1.08006 * 120.00457 * 359.97438 * 11 10 9 13 13 C 1.38801 * 120.00163 * 180.02562 * 11 10 9 14 14 N 1.31640 * 119.99650 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 120.00461 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46966 * 89.99788 * 15 13 11 17 17 H 1.48500 * 109.47223 * 209.99878 * 15 13 11 18 18 H 1.48501 * 109.47335 * 329.99952 * 15 13 11 19 19 N 1.46508 * 109.47092 * 240.00064 * 2 1 3 20 20 C 1.34772 * 119.99666 * 84.99848 * 19 2 1 21 21 O 1.21285 * 120.00367 * 0.02562 * 20 19 2 22 22 C 1.50699 * 119.99809 * 180.02562 * 20 19 2 23 23 H 1.08999 * 115.55157 * 34.27903 * 22 20 19 24 24 C 1.53009 * 117.50015 * 248.60847 * 22 20 19 25 25 C 1.52990 * 59.99817 * 252.51002 * 24 22 20 26 26 C 1.52999 * 138.58736 * 130.89156 * 25 24 22 27 27 C 1.52992 * 138.58764 * 229.10504 * 25 24 22 28 28 H 1.09000 * 109.47090 * 59.99723 * 1 2 3 29 29 H 1.08993 * 109.47376 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46634 * 299.99985 * 1 2 3 31 31 H 1.09001 * 109.46652 * 64.99787 * 4 2 1 32 32 H 1.09000 * 109.47437 * 305.00301 * 4 2 1 33 33 H 1.09001 * 109.46997 * 60.00430 * 5 4 2 34 34 H 1.09004 * 109.47298 * 300.00287 * 5 4 2 35 35 H 0.97005 * 119.99377 * 359.97438 * 6 5 4 36 36 H 1.09001 * 109.47122 * 60.00223 * 9 7 6 37 37 H 1.09004 * 109.47371 * 300.00514 * 9 7 6 38 38 H 0.97001 * 119.99781 * 180.02562 * 14 13 11 39 39 H 0.96997 * 119.99658 * 265.00016 * 19 2 1 40 40 H 1.08999 * 117.49468 * 359.97438 * 24 22 20 41 41 H 1.08991 * 117.49877 * 144.99558 * 24 22 20 42 42 H 1.08997 * 117.49765 * 238.38125 * 26 25 24 43 43 H 1.08997 * 117.49785 * 23.40650 * 26 25 24 44 44 H 1.09008 * 117.49964 * 336.59625 * 27 25 24 45 45 H 1.09003 * 117.50086 * 121.62068 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6134 1.3136 6 7 4.0533 -1.3045 2.5094 7 6 5.3743 -1.3409 2.7744 8 8 6.1586 -0.8011 2.0232 9 6 5.8766 -2.0514 4.0048 10 16 7.6805 -1.9239 4.0810 11 6 7.9876 -2.8139 5.5703 12 1 7.1639 -3.2365 6.1265 13 6 9.2880 -2.9710 6.0294 14 7 10.2920 -2.4554 5.3518 15 14 9.6135 -3.9139 7.6087 16 1 9.8150 -5.3512 7.2944 17 1 10.8320 -3.3751 8.2647 18 1 8.4525 -3.7650 8.5224 19 7 2.0184 -0.6906 -1.1962 20 6 2.1470 -0.0182 -2.3571 21 8 1.8590 1.1587 -2.4115 22 6 2.6488 -0.7287 -3.5878 23 1 2.3517 -1.7732 -3.6816 24 6 4.0305 -0.3372 -4.1156 25 6 2.7725 0.0893 -4.8747 26 6 2.1781 1.3580 -5.4895 27 6 2.2326 0.0652 -6.3060 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.7517 -1.7715 1.2055 32 1 1.6055 -0.2618 2.1370 33 1 3.8533 0.4369 1.3573 34 1 3.9995 -1.0729 0.4258 35 1 3.4259 -1.7359 3.1104 36 1 5.5878 -3.1015 3.9614 37 1 5.4424 -1.5916 4.8927 38 1 11.2008 -2.5655 5.6724 39 1 2.2490 -1.6318 -1.1526 40 1 4.5763 0.4346 -3.5730 41 1 4.6423 -1.1240 -4.5566 42 1 1.2031 1.6837 -5.1271 43 1 2.8686 2.1557 -5.7634 44 1 2.9589 0.0124 -7.1171 45 1 1.2934 -0.4596 -6.4808 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075677880.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:46 Heat of formation + Delta-G solvation = -27.991907 kcal Electronic energy + Delta-G solvation = -24165.604624 eV Core-core repulsion = 20503.885941 eV Total energy + Delta-G solvation = -3661.718683 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.41650 -39.21473 -38.11800 -36.57043 -34.42992 -33.07693 -32.43861 -31.68952 -30.07597 -28.14662 -25.50948 -24.94527 -23.31069 -22.70302 -21.46463 -20.81141 -20.32746 -19.41479 -17.86935 -17.45647 -16.67573 -16.21224 -15.97525 -15.52400 -15.39291 -15.27904 -14.81522 -14.70286 -14.58978 -14.07870 -13.95859 -13.76630 -13.22142 -12.92933 -12.81589 -12.59473 -12.37731 -12.18885 -12.03288 -11.79786 -11.64594 -11.55078 -11.27288 -11.07407 -11.03541 -10.77100 -10.55100 -10.45859 -10.32567 -9.95036 -9.82927 -9.47428 -9.35367 -9.08196 -8.90874 -8.24803 -6.51311 -6.22753 -3.93454 2.23517 2.71868 3.00821 3.08312 3.21315 3.26842 3.30774 3.38802 3.48179 3.67425 3.94602 4.19301 4.36752 4.44512 4.48823 4.54366 4.71738 4.74829 5.05251 5.07396 5.10517 5.12356 5.20912 5.21490 5.29339 5.29563 5.33325 5.37084 5.41378 5.57771 5.61485 5.62224 5.65507 5.75014 5.83876 5.85458 5.87942 5.92220 6.11897 6.20542 6.57787 7.21370 7.58316 7.67802 7.98374 8.33995 8.59526 9.22478 10.84651 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.020433 B = 0.001937 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.012200 B =14454.450367 C =15494.570873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 H 0.092 0.908 4 C -0.139 4.139 5 C 0.121 3.879 6 N -0.740 5.740 7 C 0.531 3.469 8 O -0.517 6.517 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.536 4.536 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 N -0.723 5.723 20 C 0.544 3.456 21 O -0.533 6.533 22 C -0.144 4.144 23 H 0.123 0.877 24 C -0.098 4.098 25 C -0.202 4.202 26 C -0.113 4.113 27 C -0.130 4.130 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.398 0.602 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.268 0.732 39 H 0.401 0.599 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.205 1.618 -17.144 28.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.110 0.890 4 C -0.178 4.178 5 C -0.003 4.003 6 N -0.395 5.395 7 C 0.317 3.683 8 O -0.391 6.391 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.684 4.684 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.197 1.197 19 N -0.376 5.376 20 C 0.330 3.670 21 O -0.409 6.409 22 C -0.165 4.165 23 H 0.141 0.859 24 C -0.135 4.135 25 C -0.203 4.203 26 C -0.150 4.150 27 C -0.167 4.167 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.231 0.769 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.236 0.764 40 H 0.122 0.878 41 H 0.126 0.874 42 H 0.117 0.883 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -20.901 3.427 -18.441 28.083 hybrid contribution -0.931 -2.068 2.328 3.250 sum -21.833 1.359 -16.113 27.169 Atomic orbital electron populations 1.22160 0.94852 1.02218 1.02771 1.20886 0.94091 0.97773 0.83162 0.88955 1.22125 0.95474 1.01924 0.98231 1.21255 0.92591 0.97998 0.88471 1.46004 1.07823 1.58595 1.27104 1.20322 0.81482 0.79730 0.86813 1.90710 1.54955 1.44317 1.49073 1.23532 1.06885 1.02525 0.97468 1.85413 0.92148 1.72661 1.33170 1.22867 0.95471 1.40140 1.09928 0.90927 1.25001 0.95058 0.95650 0.97921 1.70023 0.99377 1.42500 1.38356 0.86161 0.77974 0.79605 0.81713 1.20276 1.20739 1.19708 1.46058 1.67764 1.14217 1.09519 1.19683 0.76991 0.86752 0.83559 1.90700 1.49470 1.15797 1.84911 1.21974 1.03142 0.99636 0.91783 0.85883 1.22697 0.88484 1.02551 0.99794 1.21160 1.02382 1.04020 0.92719 1.22594 1.02028 0.90279 1.00079 1.22768 1.01929 1.00984 0.91020 0.91967 0.92376 0.91407 0.90534 0.89433 0.91582 0.91582 0.76858 0.89246 0.89229 0.92173 0.76411 0.87797 0.87374 0.88287 0.88473 0.88273 0.88611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 9.48 37.16 0.35 -0.75 16 2 C 0.15 1.14 2.57 -67.93 -0.17 0.96 16 3 H 0.09 0.92 7.58 -51.93 -0.39 0.53 16 4 C -0.14 -0.95 4.87 -26.73 -0.13 -1.08 16 5 C 0.12 1.32 5.56 -4.04 -0.02 1.30 16 6 N -0.74 -9.29 5.56 -60.30 -0.33 -9.62 16 7 C 0.53 9.74 7.85 -10.99 -0.09 9.65 16 8 O -0.52 -11.73 15.86 5.56 0.09 -11.64 16 9 C -0.15 -3.04 6.16 36.00 0.22 -2.82 16 10 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 11 C -0.54 -15.20 9.50 30.94 0.29 -14.90 16 12 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 13 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 14 N -0.87 -26.11 13.22 55.49 0.73 -25.38 16 15 Si 0.92 21.30 29.55 -169.99 -5.02 16.28 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 19 N -0.72 -5.69 4.53 -53.80 -0.24 -5.94 16 20 C 0.54 5.60 7.58 -10.99 -0.08 5.52 16 21 O -0.53 -7.38 15.91 5.55 0.09 -7.29 16 22 C -0.14 -1.21 6.19 -91.77 -0.57 -1.78 16 23 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 24 C -0.10 -0.82 10.23 -26.73 -0.27 -1.10 16 25 C -0.20 -1.79 5.05 -154.52 -0.78 -2.57 16 26 C -0.11 -0.97 10.16 -26.73 -0.27 -1.24 16 27 C -0.13 -0.90 10.53 -26.73 -0.28 -1.18 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.78 7.75 -51.93 -0.40 0.38 16 35 H 0.40 3.70 8.47 -40.82 -0.35 3.35 16 36 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 37 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 38 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.40 2.32 8.60 -40.82 -0.35 1.97 16 40 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.10 0.56 8.14 -51.92 -0.42 0.14 16 45 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 398.41 15.07 6.00 6.00 Total: -1.00 -36.74 398.41 -10.18 -46.91 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -7.38 Total: 2.54 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -1.90 Total: -8.01 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 0.16 Total: -40.94 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: 0.18 Total: -18.93 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.74 -10.18 -46.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075677880.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.923 kcal (2) G-P(sol) polarization free energy of solvation -36.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds