Wall clock time and date at job start Tue Mar 31 2020 15:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.46616 * 2 1 4 4 C 1.52993 * 109.47482 * 120.00354 * 2 1 3 5 5 C 1.52996 * 109.47469 * 185.00585 * 4 2 1 6 6 N 1.46500 * 109.47364 * 179.97438 * 5 4 2 7 7 C 1.34779 * 120.00169 * 179.97438 * 6 5 4 8 8 O 1.21282 * 119.99922 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00037 * 180.02562 * 7 6 5 10 10 S 1.81000 * 109.46881 * 180.02562 * 9 7 6 11 11 C 1.76206 * 99.99929 * 180.02562 * 10 9 7 12 12 H 1.07998 * 119.99720 * 359.97438 * 11 10 9 13 13 C 1.38796 * 119.99847 * 180.02562 * 11 10 9 14 14 N 1.31638 * 119.99705 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 120.00469 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.46939 * 90.00148 * 15 13 11 17 17 H 1.48496 * 109.47561 * 210.00294 * 15 13 11 18 18 H 1.48498 * 109.46932 * 330.00626 * 15 13 11 19 19 N 1.46502 * 109.47485 * 240.00388 * 2 1 3 20 20 C 1.34784 * 120.00089 * 84.99436 * 19 2 1 21 21 O 1.21284 * 119.99484 * 0.02562 * 20 19 2 22 22 C 1.50694 * 119.99952 * 180.02562 * 20 19 2 23 23 H 1.08993 * 115.55253 * 325.58841 * 22 20 19 24 24 C 1.53003 * 117.49699 * 111.25536 * 22 20 19 25 25 C 1.52996 * 117.49816 * 179.91172 * 22 20 19 26 26 C 1.52997 * 138.58838 * 121.61870 * 25 22 20 27 27 C 1.52999 * 138.58695 * 23.40810 * 25 22 20 28 28 H 1.09000 * 109.47237 * 299.99363 * 1 2 3 29 29 H 1.09001 * 109.47351 * 60.00003 * 1 2 3 30 30 H 1.09002 * 109.46700 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47399 * 64.99929 * 4 2 1 32 32 H 1.09004 * 109.46862 * 305.00226 * 4 2 1 33 33 H 1.09004 * 109.47694 * 59.99590 * 5 4 2 34 34 H 1.09004 * 109.46785 * 299.99688 * 5 4 2 35 35 H 0.96996 * 119.99986 * 359.97438 * 6 5 4 36 36 H 1.09000 * 109.47247 * 60.00371 * 9 7 6 37 37 H 1.09001 * 109.47358 * 299.99798 * 9 7 6 38 38 H 0.96996 * 119.99710 * 179.97438 * 14 13 11 39 39 H 0.96996 * 119.99935 * 264.99929 * 19 2 1 40 40 H 1.08997 * 117.50287 * 214.97836 * 24 22 20 41 41 H 1.09004 * 117.50178 * 0.02562 * 24 22 20 42 42 H 1.09001 * 117.49623 * 336.59407 * 26 25 22 43 43 H 1.08995 * 117.50060 * 121.61937 * 26 25 22 44 44 H 1.09005 * 117.49752 * 238.38141 * 27 25 22 45 45 H 1.08997 * 117.49947 * 23.37636 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5648 -0.6132 1.3136 6 7 4.0531 -1.3033 2.5101 7 6 5.3741 -1.3394 2.7753 8 8 6.1584 -0.8000 2.0238 9 6 5.8764 -2.0498 4.0057 10 16 7.6803 -1.9218 4.0821 11 6 7.9874 -2.8119 5.5714 12 1 7.1638 -3.2347 6.1274 13 6 9.2878 -2.9685 6.0306 14 7 9.5172 -3.6331 7.1435 15 14 10.7125 -2.2365 5.0694 16 1 10.9743 -0.8552 5.5476 17 1 11.9256 -3.0686 5.2716 18 1 10.3699 -2.2036 3.6249 19 7 2.0184 -0.6905 -1.1962 20 6 2.1470 -0.0181 -2.3572 21 8 1.8589 1.1588 -2.4114 22 6 2.6489 -0.7285 -3.5878 23 1 3.3940 -1.5043 -3.4118 24 6 1.6556 -0.9494 -4.7304 25 6 2.7708 0.0891 -4.8752 26 6 3.8489 0.4817 -5.8873 27 6 2.9298 1.5518 -5.2948 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7517 -1.7715 1.2055 32 1 1.6053 -0.2618 2.1369 33 1 3.8532 0.4371 1.3573 34 1 3.9994 -1.0727 0.4259 35 1 3.4258 -1.7344 3.1113 36 1 5.5879 -3.1000 3.9622 37 1 5.4421 -1.5902 4.8935 38 1 10.4261 -3.7429 7.4642 39 1 2.2491 -1.6316 -1.1527 40 1 1.7476 -1.8701 -5.3064 41 1 0.6393 -0.5804 -4.5923 42 1 4.8854 0.4658 -5.5502 43 1 3.6884 0.2006 -6.9281 44 1 2.1645 1.9746 -5.9458 45 1 3.3611 2.2399 -4.5678 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075677881.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:49 Heat of formation + Delta-G solvation = -27.743757 kcal Electronic energy + Delta-G solvation = -24199.157587 eV Core-core repulsion = 20537.449664 eV Total energy + Delta-G solvation = -3661.707923 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.46066 -39.33589 -38.16224 -36.62339 -34.52078 -33.11852 -32.45287 -31.75129 -30.18953 -28.24871 -25.63573 -24.98411 -23.40590 -22.70984 -21.56154 -20.84058 -20.44081 -19.45864 -17.90758 -17.51092 -16.72151 -16.30084 -16.06555 -15.61943 -15.38771 -15.23656 -15.05595 -14.95326 -14.47904 -14.16131 -13.87464 -13.79363 -13.37960 -13.05945 -12.81523 -12.80561 -12.43745 -12.30648 -12.07545 -11.79685 -11.71693 -11.63397 -11.32482 -11.27086 -11.01920 -10.62073 -10.59673 -10.50509 -10.36758 -9.99270 -9.87237 -9.58319 -9.41989 -9.04382 -8.98879 -8.51789 -6.93629 -6.30386 -4.02305 2.18697 2.68685 2.73879 2.94718 3.27577 3.32914 3.32994 3.44508 3.49575 3.62185 3.90202 4.30937 4.32126 4.37681 4.44739 4.50342 4.67452 4.71548 4.74364 5.03579 5.04518 5.06353 5.08673 5.16005 5.23076 5.27042 5.30885 5.32267 5.32814 5.34285 5.50275 5.56114 5.61677 5.68935 5.75662 5.78819 5.85498 5.86146 5.98536 6.16608 6.47384 7.17342 7.56515 7.92691 7.94432 8.39938 8.45937 9.15798 10.78775 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.016797 B = 0.002084 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.590719 B =13435.148629 C =14682.223519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 H 0.092 0.908 4 C -0.140 4.140 5 C 0.121 3.879 6 N -0.738 5.738 7 C 0.529 3.471 8 O -0.519 6.519 9 C -0.124 4.124 10 S -0.142 6.142 11 C -0.521 4.521 12 H 0.088 0.912 13 C 0.095 3.905 14 N -0.880 5.880 15 Si 0.857 3.143 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.235 1.235 19 N -0.724 5.724 20 C 0.544 3.456 21 O -0.532 6.532 22 C -0.144 4.144 23 H 0.125 0.875 24 C -0.100 4.100 25 C -0.202 4.202 26 C -0.130 4.130 27 C -0.113 4.113 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.399 0.601 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.271 0.729 39 H 0.401 0.599 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.096 0.904 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.243 4.244 -21.589 30.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.110 0.890 4 C -0.178 4.178 5 C -0.003 4.003 6 N -0.393 5.393 7 C 0.315 3.685 8 O -0.393 6.393 9 C -0.275 4.275 10 S 0.084 5.916 11 C -0.669 4.669 12 H 0.106 0.894 13 C -0.114 4.114 14 N -0.517 5.517 15 Si 0.682 3.318 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.159 1.159 19 N -0.376 5.376 20 C 0.330 3.670 21 O -0.408 6.408 22 C -0.165 4.165 23 H 0.143 0.857 24 C -0.137 4.137 25 C -0.202 4.202 26 C -0.166 4.166 27 C -0.150 4.150 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.233 0.767 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.081 0.919 39 H 0.236 0.764 40 H 0.125 0.875 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.114 0.886 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -20.004 5.947 -22.735 30.861 hybrid contribution -0.342 -1.256 1.233 1.793 sum -20.346 4.691 -21.502 29.972 Atomic orbital electron populations 1.22159 0.94785 1.02269 1.02790 1.20882 0.94167 0.97737 0.83120 0.88967 1.22126 0.95328 1.02023 0.98311 1.21269 0.92737 0.97988 0.88307 1.45963 1.07719 1.58507 1.27099 1.20301 0.81649 0.79759 0.86774 1.90709 1.55000 1.44484 1.49112 1.23279 1.03067 1.03240 0.97886 1.84812 0.98109 1.73852 1.34833 1.22312 0.97288 1.39508 1.07790 0.89382 1.24721 0.98322 0.93899 0.94420 1.69941 1.21724 1.39457 1.20535 0.86727 0.82131 0.79900 0.83054 1.19201 1.19931 1.15933 1.46063 1.67843 1.14139 1.09531 1.19677 0.76995 0.86750 0.83554 1.90701 1.49584 1.15728 1.84830 1.21986 1.04043 1.02484 0.88009 0.85692 1.22662 0.94286 0.99019 0.97746 1.21161 1.02829 0.98434 0.97807 1.22787 0.95215 1.01806 0.96834 1.22607 1.01224 0.89490 1.01645 0.91385 0.91962 0.92320 0.90447 0.89355 0.91527 0.91593 0.76666 0.88461 0.88489 0.91934 0.76404 0.87545 0.88157 0.88344 0.88283 0.88556 0.88117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 9.48 37.15 0.35 -0.69 16 2 C 0.15 1.08 2.57 -67.94 -0.17 0.91 16 3 H 0.09 0.89 7.58 -51.93 -0.39 0.49 16 4 C -0.14 -0.88 4.87 -26.74 -0.13 -1.01 16 5 C 0.12 1.25 5.56 -4.04 -0.02 1.22 16 6 N -0.74 -8.73 5.56 -60.29 -0.33 -9.06 16 7 C 0.53 9.20 7.85 -10.99 -0.09 9.11 16 8 O -0.52 -11.19 15.86 5.56 0.09 -11.10 16 9 C -0.12 -2.35 6.16 36.01 0.22 -2.13 16 10 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 11 C -0.52 -14.95 10.04 30.94 0.31 -14.64 16 12 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 13 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 14 N -0.88 -26.46 13.97 55.49 0.78 -25.68 16 15 Si 0.86 21.77 27.74 -169.99 -4.72 17.06 16 16 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 19 N -0.72 -5.40 4.53 -53.81 -0.24 -5.64 16 20 C 0.54 5.40 7.58 -10.99 -0.08 5.32 16 21 O -0.53 -7.19 15.91 5.55 0.09 -7.10 16 22 C -0.14 -1.16 6.19 -91.78 -0.57 -1.73 16 23 H 0.13 0.82 8.14 -51.93 -0.42 0.39 16 24 C -0.10 -0.67 10.24 -26.69 -0.27 -0.94 16 25 C -0.20 -1.72 5.06 -154.48 -0.78 -2.50 16 26 C -0.13 -0.93 10.53 -26.73 -0.28 -1.22 16 27 C -0.11 -0.97 10.16 -26.73 -0.27 -1.24 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.74 7.75 -51.93 -0.40 0.34 16 35 H 0.40 3.46 8.47 -40.82 -0.35 3.11 16 36 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 37 H 0.10 1.70 8.14 -51.91 -0.42 1.28 16 38 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.40 2.15 8.60 -40.82 -0.35 1.80 16 40 H 0.11 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 395.72 15.07 5.96 5.96 Total: -1.00 -36.47 395.72 -9.67 -46.14 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -7.41 Total: 1.88 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -1.88 Total: -6.87 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.20 Total: -40.39 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: 0.18 Total: -18.20 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.72 Total: 17.06 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.47 -9.67 -46.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075677881.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.399 kcal (2) G-P(sol) polarization free energy of solvation -36.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds