Wall clock time and date at job start Tue Mar 31 2020 15:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47166 * 2 1 4 4 C 1.52992 * 109.47448 * 120.00767 * 2 1 3 5 5 C 1.52997 * 109.47482 * 184.99813 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00597 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99622 * 179.97438 * 7 6 5 10 10 C 1.54637 * 111.04166 * 292.02743 * 9 7 6 11 11 C 1.51093 * 104.72717 * 217.33709 * 10 9 7 12 12 C 1.30528 * 111.10694 * 16.43229 * 11 10 9 13 13 C 1.51099 * 111.10077 * 0.02562 * 12 11 10 14 14 N 1.46502 * 109.46969 * 240.00729 * 2 1 3 15 15 C 1.34773 * 120.00306 * 84.99801 * 14 2 1 16 16 O 1.21292 * 119.99815 * 0.02562 * 15 14 2 17 17 C 1.50694 * 120.00409 * 179.97438 * 15 14 2 18 18 S 1.81002 * 109.47414 * 179.97438 * 17 15 14 19 19 C 1.76203 * 100.00112 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99904 * 0.02562 * 19 18 17 21 21 C 1.38795 * 119.99925 * 180.02562 * 19 18 17 22 22 N 1.31626 * 120.00183 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99898 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47224 * 60.00111 * 23 21 19 25 25 H 1.48508 * 109.47268 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47522 * 299.99969 * 23 21 19 27 27 H 1.09000 * 109.47346 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46964 * 299.99762 * 1 2 3 29 29 H 1.09004 * 109.47224 * 59.99257 * 1 2 3 30 30 H 1.09002 * 109.47103 * 64.99566 * 4 2 1 31 31 H 1.08998 * 109.46862 * 305.00378 * 4 2 1 32 32 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 33 33 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 34 34 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 35 35 H 1.09004 * 110.91585 * 56.03639 * 9 7 6 36 36 H 1.09003 * 110.38235 * 336.14939 * 10 9 7 37 37 H 1.08999 * 110.38553 * 98.51882 * 10 9 7 38 38 H 1.08007 * 124.44878 * 196.45483 * 11 10 9 39 39 H 1.08001 * 124.44651 * 180.02562 * 12 11 10 40 40 H 1.08995 * 110.38694 * 224.74838 * 13 12 11 41 41 H 1.09008 * 110.48356 * 102.42712 * 13 12 11 42 42 H 0.97003 * 120.00235 * 265.00555 * 14 2 1 43 43 H 1.08997 * 109.47334 * 300.00478 * 17 15 14 44 44 H 1.09008 * 109.47061 * 60.00564 * 17 15 14 45 45 H 0.97003 * 120.00222 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3135 6 7 4.0531 -1.3037 2.5099 7 6 5.3740 -1.3399 2.7750 8 8 6.1584 -0.8006 2.0235 9 6 5.8763 -2.0494 4.0060 10 6 5.4437 -1.3057 5.2909 11 6 6.6207 -1.4421 6.2284 12 6 7.6969 -1.8006 5.5827 13 6 7.4170 -1.9626 4.1067 14 7 2.0183 -0.6905 -1.1963 15 6 2.1470 -0.0181 -2.3572 16 8 1.8589 1.1589 -2.4114 17 6 2.6498 -0.7281 -3.5876 18 16 2.7098 0.4348 -4.9733 19 6 3.3130 -0.6303 -6.2407 20 1 3.5224 -1.6667 -6.0208 21 6 3.5189 -0.1373 -7.5217 22 7 3.2632 1.1258 -7.7899 23 14 4.1591 -1.2662 -8.8652 24 1 3.2087 -2.3902 -9.0619 25 1 4.2910 -0.5028 -10.1322 26 1 5.4859 -1.8034 -8.4700 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5140 -0.8899 30 1 1.7516 -1.7716 1.2053 31 1 1.6054 -0.2620 2.1368 32 1 3.8532 0.4368 1.3572 33 1 3.9994 -1.0729 0.4257 34 1 3.4258 -1.7353 3.1108 35 1 5.5406 -3.0864 4.0217 36 1 5.2503 -0.2550 5.0745 37 1 4.5589 -1.7746 5.7214 38 1 6.5772 -1.2663 7.2932 39 1 8.6607 -1.9606 6.0429 40 1 7.8738 -2.8785 3.7319 41 1 7.7865 -1.1003 3.5515 42 1 2.2489 -1.6317 -1.1529 43 1 3.6491 -1.1200 -3.3981 44 1 1.9775 -1.5504 -3.8328 45 1 3.4068 1.4702 -8.6853 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076006831.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:11 Heat of formation + Delta-G solvation = -100.361374 kcal Electronic energy + Delta-G solvation = -24324.322829 eV Core-core repulsion = 20659.465970 eV Total energy + Delta-G solvation = -3664.856859 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.29991 -40.75833 -38.68770 -37.59554 -35.63882 -34.59764 -33.08410 -31.25041 -30.08777 -29.40597 -29.00126 -27.66924 -24.94660 -22.98433 -22.55322 -21.61904 -20.82113 -19.83839 -19.69004 -18.37237 -17.92536 -17.42358 -17.24256 -16.89092 -16.67476 -16.42863 -16.24573 -15.86249 -15.55824 -14.81569 -14.77900 -14.49601 -14.39732 -14.00703 -13.81141 -13.49640 -13.30407 -13.18553 -13.04645 -13.02635 -12.87730 -12.70409 -12.62246 -12.51101 -12.38893 -12.14267 -12.05799 -11.90593 -11.74473 -11.14158 -10.94203 -10.88690 -10.29563 -10.21204 -10.06338 -9.80599 -8.67907 -8.35594 -6.13904 1.26031 1.35819 1.42750 1.45722 1.55846 1.57970 1.62812 2.12364 2.25660 2.31491 2.98173 3.31314 3.45772 3.62093 3.74136 3.81851 3.96548 4.02127 4.09988 4.24914 4.28012 4.37473 4.43173 4.48480 4.50036 4.58593 4.64992 4.76546 4.82432 4.82643 4.89272 4.92308 5.02673 5.08073 5.14800 5.18263 5.34011 5.40012 5.41337 5.56461 5.62357 5.97898 6.18288 6.51579 6.54453 7.05258 7.24803 7.27122 8.73394 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.014946 B = 0.002138 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.939077 B =13094.557337 C =14539.663007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.141 3.859 3 H 0.062 0.938 4 C -0.116 4.116 5 C 0.116 3.884 6 N -0.710 5.710 7 C 0.514 3.486 8 O -0.591 6.591 9 C -0.110 4.110 10 C -0.086 4.086 11 C -0.167 4.167 12 C -0.175 4.175 13 C -0.097 4.097 14 N -0.710 5.710 15 C 0.534 3.466 16 O -0.565 6.565 17 C -0.131 4.131 18 S -0.152 6.152 19 C -0.548 4.548 20 H 0.082 0.918 21 C 0.012 3.988 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.260 1.260 25 H -0.278 1.278 26 H -0.264 1.264 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.029 0.971 30 H 0.107 0.893 31 H 0.115 0.885 32 H 0.044 0.956 33 H 0.051 0.949 34 H 0.421 0.579 35 H 0.134 0.866 36 H 0.069 0.931 37 H 0.110 0.890 38 H 0.146 0.854 39 H 0.137 0.863 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.414 0.586 43 H 0.104 0.896 44 H 0.111 0.889 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.921 -12.915 32.456 34.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.036 3.964 3 H 0.080 0.920 4 C -0.154 4.154 5 C -0.008 4.008 6 N -0.362 5.362 7 C 0.302 3.698 8 O -0.471 6.471 9 C -0.131 4.131 10 C -0.123 4.123 11 C -0.185 4.185 12 C -0.193 4.193 13 C -0.135 4.135 14 N -0.364 5.364 15 C 0.320 3.680 16 O -0.443 6.443 17 C -0.282 4.282 18 S 0.075 5.925 19 C -0.696 4.696 20 H 0.100 0.900 21 C -0.193 4.193 22 N -0.547 5.547 23 Si 0.820 3.180 24 H -0.185 1.185 25 H -0.203 1.203 26 H -0.188 1.188 27 H 0.096 0.904 28 H 0.107 0.893 29 H 0.048 0.952 30 H 0.125 0.875 31 H 0.133 0.867 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.259 0.741 35 H 0.151 0.849 36 H 0.087 0.913 37 H 0.128 0.872 38 H 0.164 0.836 39 H 0.155 0.845 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.251 0.749 43 H 0.122 0.878 44 H 0.129 0.871 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.885 -10.445 31.728 33.415 hybrid contribution 0.810 -1.804 -1.087 2.257 sum -0.074 -12.249 30.641 32.999 Atomic orbital electron populations 1.22119 0.93804 1.03275 1.02289 1.20996 0.95027 0.96788 0.83577 0.91955 1.21992 0.92218 1.03642 0.97574 1.21296 0.95391 0.96504 0.87617 1.45798 1.07170 1.56485 1.26759 1.21016 0.82408 0.79405 0.87017 1.90733 1.56856 1.47919 1.51563 1.22227 0.97027 1.01831 0.92052 1.21357 0.99114 1.00303 0.91548 1.23464 0.94734 1.00137 1.00154 1.23408 0.99837 1.01423 0.94601 1.21320 0.94068 1.02593 0.95519 1.45911 1.67511 1.14510 1.08483 1.20009 0.76651 0.86578 0.84749 1.90690 1.50729 1.17706 1.85202 1.23388 1.05269 1.03286 0.96301 1.85556 1.86655 1.17479 1.02778 1.23172 1.51103 0.98441 0.96853 0.89990 1.26148 0.95064 0.97258 1.00783 1.70178 1.46745 1.15482 1.22311 0.84997 0.79039 0.77768 0.76148 1.18480 1.20302 1.18819 0.90391 0.89278 0.95195 0.87501 0.86701 0.93771 0.93049 0.74110 0.84862 0.91303 0.87188 0.83595 0.84527 0.90461 0.91870 0.74859 0.87800 0.87124 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 9.48 71.98 0.68 -2.04 16 2 C 0.14 2.73 2.57 44.99 0.12 2.84 16 3 H 0.06 1.62 7.58 -2.39 -0.02 1.60 16 4 C -0.12 -1.14 4.87 30.59 0.15 -0.99 16 5 C 0.12 1.96 5.56 86.38 0.48 2.44 16 6 N -0.71 -8.79 5.56 -463.06 -2.57 -11.36 16 7 C 0.51 9.83 7.06 87.66 0.62 10.45 16 8 O -0.59 -18.38 15.51 -3.03 -0.05 -18.43 16 9 C -0.11 -1.33 3.55 -10.42 -0.04 -1.37 16 10 C -0.09 -0.72 6.37 30.53 0.19 -0.53 16 11 C -0.17 -1.57 10.77 26.26 0.28 -1.29 16 12 C -0.17 -2.12 10.77 26.26 0.28 -1.83 16 13 C -0.10 -1.56 6.18 30.54 0.19 -1.37 16 14 N -0.71 -17.05 4.53 -442.55 -2.00 -19.05 16 15 C 0.53 19.88 7.81 87.66 0.68 20.57 16 16 O -0.57 -26.50 15.53 -3.07 -0.05 -26.55 16 17 C -0.13 -5.34 6.16 71.23 0.44 -4.90 16 18 S -0.15 -8.64 20.57 -56.49 -1.16 -9.81 16 19 C -0.55 -32.00 9.50 67.95 0.65 -31.35 16 20 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 21 C 0.01 0.71 5.49 84.86 0.47 1.18 16 22 N -0.91 -56.98 13.22 21.65 0.29 -56.70 16 23 Si 1.00 44.44 29.55 68.60 2.03 46.46 16 24 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 25 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 26 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 27 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 29 H 0.03 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.05 1.11 7.75 -2.39 -0.02 1.09 16 34 H 0.42 1.59 8.47 -92.71 -0.79 0.81 16 35 H 0.13 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.07 0.77 7.88 -2.39 -0.02 0.75 16 37 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.15 0.81 8.06 -2.91 -0.02 0.79 16 39 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 40 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.06 1.43 6.96 -2.38 -0.02 1.42 16 42 H 0.41 7.13 8.60 -92.71 -0.80 6.33 16 43 H 0.10 3.91 8.14 -2.40 -0.02 3.89 16 44 H 0.11 4.00 8.14 -2.39 -0.02 3.99 16 45 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -88.32 390.98 1.09 -87.23 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -0.59 Total: 16.40 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 5.19 Total: -8.20 kcal Atomic # 7 Polarization: -82.82 SS G_CDS: -4.29 Total: -87.11 kcal Atomic # 8 Polarization: -44.88 SS G_CDS: -0.09 Total: -44.97 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.81 kcal Total: -88.32 1.09 -87.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076006831.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.130 kcal (2) G-P(sol) polarization free energy of solvation -88.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds