Wall clock time and date at job start Tue Mar 31 2020 15:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 C 1.52995 * 109.47187 * 119.99498 * 2 1 3 5 5 C 1.53000 * 109.47152 * 185.00354 * 4 2 1 6 6 N 1.46498 * 109.47226 * 180.02562 * 5 4 2 7 7 C 1.34776 * 120.00351 * 180.02562 * 6 5 4 8 8 O 1.21612 * 119.99682 * 359.97438 * 7 6 5 9 9 C 1.47099 * 120.00465 * 179.97438 * 7 6 5 10 10 C 1.32995 * 120.00134 * 179.97438 * 9 7 6 11 11 C 1.50698 * 120.00006 * 179.97438 * 10 9 7 12 12 C 1.53002 * 117.50284 * 188.62304 * 11 10 9 13 13 C 1.53000 * 117.49706 * 119.99793 * 11 10 9 14 14 N 1.46496 * 109.47129 * 240.00164 * 2 1 3 15 15 C 1.34777 * 120.00258 * 85.00009 * 14 2 1 16 16 O 1.21279 * 120.00166 * 359.97438 * 15 14 2 17 17 C 1.50706 * 119.99762 * 179.97438 * 15 14 2 18 18 S 1.81003 * 109.46853 * 179.97438 * 17 15 14 19 19 C 1.76196 * 99.99846 * 179.97438 * 18 17 15 20 20 H 1.07998 * 120.00030 * 359.97438 * 19 18 17 21 21 C 1.38802 * 119.99637 * 180.02562 * 19 18 17 22 22 N 1.31633 * 119.99688 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 120.00457 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47357 * 89.99660 * 23 21 19 25 25 H 1.48495 * 109.47496 * 209.99879 * 23 21 19 26 26 H 1.48500 * 109.46916 * 330.00121 * 23 21 19 27 27 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47302 * 300.00204 * 1 2 3 29 29 H 1.09006 * 109.47229 * 60.00541 * 1 2 3 30 30 H 1.08994 * 109.47690 * 305.00545 * 4 2 1 31 31 H 1.09003 * 109.47048 * 65.00365 * 4 2 1 32 32 H 1.09004 * 109.46980 * 300.00055 * 5 4 2 33 33 H 1.08995 * 109.47311 * 60.00363 * 5 4 2 34 34 H 0.97007 * 119.99883 * 359.97438 * 6 5 4 35 35 H 1.08000 * 119.99413 * 359.97438 * 9 7 6 36 36 H 1.07995 * 120.00039 * 359.97438 * 10 9 7 37 37 H 1.09000 * 115.55163 * 334.33365 * 11 10 9 38 38 H 1.08996 * 117.49114 * 0.02562 * 12 11 10 39 39 H 1.08991 * 117.49866 * 145.01999 * 12 11 10 40 40 H 1.09006 * 117.50044 * 214.97855 * 13 11 10 41 41 H 1.09000 * 117.50281 * 359.97438 * 13 11 10 42 42 H 0.96999 * 119.99694 * 264.99399 * 14 2 1 43 43 H 1.09000 * 109.47318 * 299.99141 * 17 15 14 44 44 H 1.09000 * 109.47161 * 59.99772 * 17 15 14 45 45 H 0.97002 * 120.00245 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3137 6 7 4.0532 -1.3041 2.5096 7 6 5.3741 -1.3394 2.7753 8 8 6.1605 -0.7981 2.0221 9 6 5.8644 -2.0328 3.9764 10 6 7.1679 -2.0681 4.2383 11 6 7.6702 -2.7779 5.4691 12 6 9.1492 -2.6143 5.8249 13 6 8.6394 -3.9442 5.2658 14 7 2.0183 -0.6906 -1.1962 15 6 2.1471 -0.0182 -2.3571 16 8 1.8582 1.1584 -2.4118 17 6 2.6500 -0.7286 -3.5874 18 16 2.7100 0.4342 -4.9733 19 6 3.3147 -0.6306 -6.2401 20 1 3.5255 -1.6666 -6.0197 21 6 3.5211 -0.1376 -7.5211 22 7 3.9724 -0.9333 -8.4677 23 14 3.1586 1.6548 -7.9018 24 1 4.3772 2.4685 -7.6605 25 1 2.7493 1.7861 -9.3232 26 1 2.0611 2.1350 -7.0243 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 1.6054 -0.2617 2.1370 31 1 1.7517 -1.7714 1.2056 32 1 3.9995 -1.0726 0.4260 33 1 3.8531 0.4372 1.3574 34 1 3.4259 -1.7356 3.1107 35 1 5.1659 -2.5132 4.6455 36 1 7.8663 -1.5881 3.5689 37 1 6.9594 -2.8519 6.2921 38 1 9.7588 -1.9929 5.1689 39 1 9.4117 -2.5804 6.8822 40 1 8.5666 -4.7852 5.9555 41 1 8.9134 -4.1984 4.2419 42 1 2.2491 -1.6317 -1.1525 43 1 3.6494 -1.1203 -3.3979 44 1 1.9778 -1.5509 -3.8325 45 1 4.1164 -0.5889 -9.3630 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076035329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:22 Heat of formation + Delta-G solvation = -75.704111 kcal Electronic energy + Delta-G solvation = -23752.809735 eV Core-core repulsion = 20089.022095 eV Total energy + Delta-G solvation = -3663.787640 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.00115 -40.62001 -38.48924 -37.68176 -35.63037 -34.68891 -33.56971 -32.98163 -30.53994 -29.71813 -27.86626 -25.94711 -23.92060 -23.24939 -22.59037 -21.79235 -21.51259 -20.51486 -19.89686 -18.33633 -17.98908 -17.46812 -17.19625 -17.03185 -16.51154 -16.40947 -16.14720 -15.82331 -15.57095 -15.03145 -14.82051 -14.75667 -14.69297 -14.43660 -14.02409 -13.58334 -13.37726 -13.35161 -13.08778 -13.01936 -12.63885 -12.61727 -12.44976 -12.40443 -12.39636 -12.12395 -11.91677 -11.87124 -11.41747 -11.18885 -11.01116 -10.95544 -10.55688 -10.33075 -10.13987 -9.92259 -9.01203 -8.53195 -6.23998 0.30404 0.97745 1.30145 1.45290 1.54836 1.57469 2.16564 2.22080 2.23766 2.26905 2.70672 2.84906 3.01647 3.55500 3.72537 3.83235 3.94469 3.95181 4.01143 4.06508 4.11069 4.20178 4.22150 4.42260 4.43133 4.44604 4.48622 4.63148 4.78483 4.82246 4.88837 4.99678 5.02422 5.11314 5.13069 5.23407 5.33569 5.35349 5.40165 5.46948 5.53908 5.69031 6.09470 6.47417 6.57066 6.91843 7.21214 7.24671 8.59285 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.013343 B = 0.002030 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.030076 B =13786.464268 C =15361.895700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.142 3.858 3 H 0.066 0.934 4 C -0.117 4.117 5 C 0.116 3.884 6 N -0.707 5.707 7 C 0.533 3.467 8 O -0.602 6.602 9 C -0.213 4.213 10 C -0.036 4.036 11 C -0.144 4.144 12 C -0.175 4.175 13 C -0.165 4.165 14 N -0.709 5.709 15 C 0.536 3.464 16 O -0.561 6.561 17 C -0.113 4.113 18 S -0.176 6.176 19 C -0.530 4.530 20 H 0.061 0.939 21 C 0.045 3.955 22 N -0.916 5.916 23 Si 0.915 3.085 24 H -0.264 1.264 25 H -0.257 1.257 26 H -0.237 1.237 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.032 0.968 30 H 0.115 0.885 31 H 0.105 0.895 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.422 0.578 35 H 0.166 0.834 36 H 0.102 0.898 37 H 0.136 0.864 38 H 0.090 0.910 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.089 0.911 42 H 0.415 0.585 43 H 0.107 0.893 44 H 0.115 0.885 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.196 -7.531 35.581 36.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.037 3.963 3 H 0.084 0.916 4 C -0.155 4.155 5 C -0.008 4.008 6 N -0.359 5.359 7 C 0.323 3.677 8 O -0.485 6.485 9 C -0.233 4.233 10 C -0.057 4.057 11 C -0.162 4.162 12 C -0.212 4.212 13 C -0.201 4.201 14 N -0.364 5.364 15 C 0.321 3.679 16 O -0.440 6.440 17 C -0.264 4.264 18 S 0.051 5.949 19 C -0.678 4.678 20 H 0.079 0.921 21 C -0.160 4.160 22 N -0.554 5.554 23 Si 0.737 3.263 24 H -0.189 1.189 25 H -0.181 1.181 26 H -0.160 1.160 27 H 0.095 0.905 28 H 0.107 0.893 29 H 0.051 0.949 30 H 0.133 0.867 31 H 0.124 0.876 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.260 0.740 35 H 0.183 0.817 36 H 0.120 0.880 37 H 0.154 0.846 38 H 0.109 0.891 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.108 0.892 42 H 0.252 0.748 43 H 0.125 0.875 44 H 0.133 0.867 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.121 -5.248 34.792 35.204 hybrid contribution 0.514 -1.257 -0.917 1.639 sum -0.606 -6.505 33.875 34.499 Atomic orbital electron populations 1.22118 0.93695 1.03275 1.02411 1.21005 0.95069 0.96849 0.83361 0.91586 1.22002 0.92125 1.03661 0.97743 1.21312 0.95445 0.96554 0.87506 1.45698 1.07066 1.56272 1.26866 1.19236 0.82586 0.79571 0.86302 1.90815 1.56971 1.48711 1.51957 1.22571 0.97668 1.05084 0.98023 1.23179 0.95976 0.91805 0.94693 1.21394 0.94362 1.02850 0.97547 1.23120 0.94730 1.00228 1.03077 1.23075 1.01694 0.92358 1.03011 1.45912 1.67335 1.14598 1.08512 1.19900 0.76771 0.86590 0.84619 1.90683 1.50741 1.17398 1.85140 1.23293 1.05893 1.02379 0.94847 1.84684 1.86866 1.18864 1.04508 1.22467 1.50244 0.98260 0.96805 0.92056 1.25579 0.93217 1.02340 0.94905 1.70018 1.44435 1.37747 1.03237 0.85854 0.80951 0.79859 0.79621 1.18870 1.18106 1.16040 0.90522 0.89299 0.94895 0.86684 0.87625 0.93062 0.93544 0.74034 0.81667 0.88045 0.84584 0.89132 0.86608 0.86360 0.89226 0.74833 0.87463 0.86719 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 9.48 71.98 0.68 -1.83 16 2 C 0.14 2.56 2.57 44.99 0.12 2.68 16 3 H 0.07 1.59 7.58 -2.39 -0.02 1.57 16 4 C -0.12 -1.12 4.87 30.59 0.15 -0.97 16 5 C 0.12 1.97 5.56 86.38 0.48 2.45 16 6 N -0.71 -9.53 5.55 -466.72 -2.59 -12.13 16 7 C 0.53 11.02 7.76 86.57 0.67 11.69 16 8 O -0.60 -19.47 16.22 -4.07 -0.07 -19.54 16 9 C -0.21 -2.81 9.67 23.43 0.23 -2.58 16 10 C -0.04 -0.53 9.24 24.52 0.23 -0.31 16 11 C -0.14 -1.29 6.01 -11.54 -0.07 -1.36 16 12 C -0.17 -1.49 10.24 30.60 0.31 -1.18 16 13 C -0.16 -1.35 10.23 30.60 0.31 -1.04 16 14 N -0.71 -16.05 4.53 -442.54 -2.00 -18.06 16 15 C 0.54 18.59 7.81 87.66 0.68 19.27 16 16 O -0.56 -24.21 15.53 -3.03 -0.05 -24.26 16 17 C -0.11 -4.39 6.16 71.24 0.44 -3.95 16 18 S -0.18 -9.13 18.55 -56.49 -1.05 -10.18 16 19 C -0.53 -31.63 10.04 67.96 0.68 -30.95 16 20 H 0.06 3.85 8.03 -2.91 -0.02 3.83 16 21 C 0.04 2.70 5.50 84.86 0.47 3.16 16 22 N -0.92 -56.78 13.97 21.65 0.30 -56.47 16 23 Si 0.92 46.04 27.74 68.60 1.90 47.94 16 24 H -0.26 -13.03 7.11 99.48 0.71 -12.33 16 25 H -0.26 -12.03 7.11 99.48 0.71 -11.33 16 26 H -0.24 -11.86 6.74 99.48 0.67 -11.19 16 27 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.03 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.05 1.11 7.75 -2.39 -0.02 1.09 16 33 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.42 2.00 8.46 -92.70 -0.78 1.21 16 35 H 0.17 0.80 8.06 -2.91 -0.02 0.78 16 36 H 0.10 2.02 7.49 -2.91 -0.02 2.00 16 37 H 0.14 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.12 0.56 8.14 -2.38 -0.02 0.54 16 41 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.41 6.83 8.60 -92.71 -0.80 6.03 16 43 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 44 H 0.11 4.04 8.14 -2.40 -0.02 4.02 16 45 H 0.28 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -85.81 398.30 1.21 -84.61 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -0.63 Total: 12.98 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: 5.38 Total: -4.90 kcal Atomic # 7 Polarization: -82.36 SS G_CDS: -4.29 Total: -86.66 kcal Atomic # 8 Polarization: -43.68 SS G_CDS: -0.11 Total: -43.79 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.90 Total: 47.94 kcal Atomic # 16 Polarization: -9.13 SS G_CDS: -1.05 Total: -10.18 kcal Total: -85.81 1.21 -84.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076035329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.904 kcal (2) G-P(sol) polarization free energy of solvation -85.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds