Wall clock time and date at job start Tue Mar 31 2020 15:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47315 * 2 1 4 4 C 1.52998 * 109.47271 * 120.00125 * 2 1 3 5 5 C 1.52999 * 109.47303 * 184.99770 * 4 2 1 6 6 N 1.46505 * 109.47192 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99724 * 180.02562 * 6 5 4 8 8 O 1.21613 * 120.00252 * 359.97438 * 7 6 5 9 9 C 1.47104 * 119.99657 * 179.72600 * 7 6 5 10 10 C 1.32991 * 119.99958 * 180.27470 * 9 7 6 11 11 C 1.51411 * 136.31614 * 359.62841 * 10 9 7 12 12 C 1.53374 * 87.51543 * 206.05988 * 11 10 9 13 13 C 1.51402 * 136.31842 * 179.97438 * 10 9 7 14 14 N 1.46503 * 109.46960 * 239.99600 * 2 1 3 15 15 C 1.34774 * 119.99800 * 85.00229 * 14 2 1 16 16 O 1.21284 * 120.00028 * 359.97438 * 15 14 2 17 17 C 1.50703 * 119.99931 * 180.02562 * 15 14 2 18 18 S 1.81003 * 109.46957 * 179.97438 * 17 15 14 19 19 C 1.76206 * 99.99644 * 179.97438 * 18 17 15 20 20 H 1.07993 * 120.00052 * 359.97438 * 19 18 17 21 21 C 1.38794 * 119.99740 * 179.97438 * 19 18 17 22 22 N 1.31632 * 119.99884 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99947 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47329 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47213 * 120.00262 * 23 21 19 26 26 H 1.48502 * 109.47094 * 240.00166 * 23 21 19 27 27 H 1.09002 * 109.47122 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46818 * 300.00532 * 1 2 3 29 29 H 1.08995 * 109.46839 * 60.00098 * 1 2 3 30 30 H 1.09001 * 109.47719 * 64.99334 * 4 2 1 31 31 H 1.09007 * 109.46897 * 304.99964 * 4 2 1 32 32 H 1.09003 * 109.47128 * 60.00136 * 5 4 2 33 33 H 1.08993 * 109.47209 * 299.99855 * 5 4 2 34 34 H 0.97000 * 119.99792 * 359.97438 * 6 5 4 35 35 H 1.08002 * 119.99790 * 0.26959 * 9 7 6 36 36 H 1.09001 * 113.55483 * 320.63628 * 11 10 9 37 37 H 1.08990 * 113.55924 * 91.37080 * 11 10 9 38 38 H 1.09003 * 113.96661 * 220.29339 * 12 11 10 39 39 H 1.08995 * 113.60310 * 88.79227 * 12 11 10 40 40 H 1.08999 * 113.56280 * 268.63266 * 13 10 9 41 41 H 1.09010 * 113.55597 * 39.36011 * 13 10 9 42 42 H 0.97005 * 119.99839 * 265.00439 * 14 2 1 43 43 H 1.09005 * 109.46613 * 299.99483 * 17 15 14 44 44 H 1.08994 * 109.47088 * 59.99199 * 17 15 14 45 45 H 0.97008 * 119.99461 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6134 1.3136 6 7 4.0532 -1.3035 2.5101 7 6 5.3740 -1.3387 2.7758 8 8 6.1606 -0.7981 2.0221 9 6 5.8638 -2.0265 3.9804 10 6 7.1667 -2.0567 4.2455 11 6 8.4294 -1.5363 3.5917 12 6 9.1817 -2.6739 4.2934 13 6 8.0499 -2.6319 5.3323 14 7 2.0183 -0.6907 -1.1962 15 6 2.1470 -0.0184 -2.3571 16 8 1.8582 1.1583 -2.4117 17 6 2.6488 -0.7290 -3.5877 18 16 2.7091 0.4339 -4.9735 19 6 3.3124 -0.6315 -6.2407 20 1 3.5224 -1.6676 -6.0205 21 6 3.5176 -0.1389 -7.5220 22 7 3.2620 1.1242 -7.7903 23 14 4.1565 -1.2684 -8.8657 24 1 4.3626 -2.6304 -8.3110 25 1 3.1682 -1.3295 -9.9723 26 1 5.4460 -0.7433 -9.3821 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.7516 -1.7715 1.2057 31 1 1.6054 -0.2617 2.1370 32 1 3.8533 0.4369 1.3573 33 1 3.9994 -1.0729 0.4260 34 1 3.4258 -1.7344 3.1115 35 1 5.1653 -2.5069 4.6495 36 1 8.4253 -1.6240 2.5053 37 1 8.7208 -0.5440 3.9355 38 1 10.1543 -2.3828 4.6902 39 1 9.2148 -3.5971 3.7151 40 1 8.2373 -1.9398 6.1533 41 1 7.7346 -3.6181 5.6734 42 1 2.2489 -1.6319 -1.1525 43 1 3.6480 -1.1215 -3.3985 44 1 1.9759 -1.5508 -3.8324 45 1 3.4051 1.4684 -8.6859 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076118969.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:17 Heat of formation + Delta-G solvation = -47.995518 kcal Electronic energy + Delta-G solvation = -24055.389536 eV Core-core repulsion = 20392.803431 eV Total energy + Delta-G solvation = -3662.586105 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.13793 -39.42280 -38.62535 -36.55504 -34.57305 -32.40268 -31.96682 -31.24458 -29.17913 -28.42457 -26.16431 -25.46078 -24.52880 -22.91317 -21.58181 -20.88336 -20.30861 -18.64085 -17.81816 -17.22246 -16.57725 -16.38398 -16.00421 -15.86878 -15.37530 -14.98804 -14.78113 -14.73653 -14.29646 -14.19612 -13.72670 -13.54353 -13.20567 -12.88778 -12.85512 -12.62557 -12.38496 -12.12626 -12.12058 -11.91906 -11.71917 -11.50697 -11.39384 -11.08184 -11.04353 -10.98932 -10.89431 -10.72901 -9.92939 -9.77694 -9.61956 -9.35591 -9.24031 -9.05188 -8.88452 -8.20048 -6.46618 -6.19180 -3.89202 1.03714 2.88713 3.06006 3.08752 3.12938 3.23652 3.30249 3.35155 3.74120 3.95513 4.08989 4.22944 4.35306 4.48943 4.63519 4.70731 4.77117 4.82217 5.09991 5.16048 5.18384 5.21208 5.24999 5.27217 5.33165 5.36476 5.42933 5.56310 5.59529 5.64526 5.69323 5.76953 5.83304 5.89868 5.92554 6.02357 6.16713 6.18045 6.19767 6.24361 6.67857 7.28109 7.62642 7.73087 8.05032 8.38215 8.64798 9.26356 10.88307 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011467 B = 0.002223 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.215822 B =12592.014692 C =14582.761420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 H 0.091 0.909 4 C -0.137 4.137 5 C 0.117 3.883 6 N -0.729 5.729 7 C 0.546 3.454 8 O -0.536 6.536 9 C -0.203 4.203 10 C -0.059 4.059 11 C -0.108 4.108 12 C -0.143 4.143 13 C -0.109 4.109 14 N -0.736 5.736 15 C 0.534 3.466 16 O -0.517 6.517 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.072 3.928 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.399 0.601 35 H 0.132 0.868 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.101 0.899 41 H 0.078 0.922 42 H 0.397 0.603 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.535 -10.193 29.574 31.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.109 0.891 4 C -0.175 4.175 5 C -0.006 4.006 6 N -0.381 5.381 7 C 0.335 3.665 8 O -0.414 6.414 9 C -0.224 4.224 10 C -0.061 4.061 11 C -0.145 4.145 12 C -0.180 4.180 13 C -0.146 4.146 14 N -0.391 5.391 15 C 0.320 3.680 16 O -0.391 6.391 17 C -0.305 4.305 18 S 0.166 5.834 19 C -0.682 4.682 20 H 0.091 0.909 21 C -0.137 4.137 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.233 0.767 35 H 0.149 0.851 36 H 0.107 0.893 37 H 0.117 0.883 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.119 0.881 41 H 0.096 0.904 42 H 0.231 0.769 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.612 -7.669 28.783 29.901 hybrid contribution 0.366 -2.838 -0.464 2.899 sum 2.977 -10.507 28.318 30.351 Atomic orbital electron populations 1.22172 0.95033 1.02075 1.02818 1.20778 0.94135 0.97759 0.83243 0.89075 1.22103 0.94632 1.02011 0.98772 1.21398 0.93503 0.98036 0.87667 1.45886 1.07438 1.57561 1.27218 1.18455 0.82132 0.80174 0.85712 1.90825 1.55238 1.45599 1.49784 1.21556 0.94536 1.06847 0.99447 1.23523 0.93132 0.92692 0.96782 1.22250 0.91631 0.98627 1.01973 1.22742 0.97684 0.99652 0.97968 1.22371 0.94503 1.01389 0.96311 1.46128 1.69483 1.13862 1.09578 1.20294 0.76717 0.87216 0.83765 1.90699 1.48234 1.15739 1.84396 1.23539 1.03684 1.04836 0.98420 1.85387 1.86253 1.12988 0.98751 1.22909 1.50811 0.98184 0.96323 0.90902 1.24997 0.95138 0.95550 0.97983 1.70035 1.45670 1.13210 1.21380 0.86113 0.78517 0.80140 0.80702 1.19636 1.20594 1.20560 0.92552 0.91886 0.91435 0.90655 0.89772 0.91130 0.90904 0.76694 0.85061 0.89325 0.88311 0.90293 0.89655 0.88058 0.90370 0.76934 0.89244 0.89286 0.92266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.48 37.16 0.35 -1.29 16 2 C 0.15 1.58 2.57 -67.93 -0.17 1.41 16 3 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 4 C -0.14 -0.98 4.87 -26.73 -0.13 -1.11 16 5 C 0.12 1.13 5.56 -4.04 -0.02 1.11 16 6 N -0.73 -6.00 5.55 -61.49 -0.34 -6.34 16 7 C 0.55 6.02 7.76 -12.66 -0.10 5.92 16 8 O -0.54 -8.28 15.15 5.27 0.08 -8.21 16 9 C -0.20 -1.64 10.03 -37.81 -0.38 -2.02 16 10 C -0.06 -0.48 6.93 -100.48 -0.70 -1.18 16 11 C -0.11 -0.93 6.99 -27.56 -0.19 -1.12 16 12 C -0.14 -0.86 8.17 -26.19 -0.21 -1.07 16 13 C -0.11 -0.58 7.96 -27.40 -0.22 -0.80 16 14 N -0.74 -9.52 4.53 -53.80 -0.24 -9.76 16 15 C 0.53 9.94 7.81 -10.98 -0.09 9.86 16 16 O -0.52 -11.69 15.53 5.55 0.09 -11.61 16 17 C -0.15 -3.16 6.16 36.01 0.22 -2.94 16 18 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 19 C -0.53 -15.45 9.50 30.94 0.29 -15.16 16 20 H 0.07 2.00 7.80 -52.49 -0.41 1.60 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.50 13.22 55.49 0.73 -25.77 16 23 Si 0.92 21.75 29.55 -169.99 -5.02 16.72 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.85 7.75 -51.93 -0.40 0.44 16 34 H 0.40 1.92 8.46 -40.82 -0.35 1.57 16 35 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 36 H 0.09 0.96 7.49 -51.93 -0.39 0.57 16 37 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.34 8.14 -51.92 -0.42 -0.09 16 42 H 0.40 4.07 8.60 -40.82 -0.35 3.72 16 43 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 44 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 45 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 394.60 15.07 5.95 5.95 Total: -1.00 -37.49 394.60 -9.76 -47.24 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -7.34 Total: 2.03 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -1.44 Total: -6.39 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: 0.15 Total: -41.87 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: 0.17 Total: -19.81 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.49 -9.76 -47.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076118969.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.753 kcal (2) G-P(sol) polarization free energy of solvation -37.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds