Wall clock time and date at job start Tue Mar 31 2020 15:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47315 * 2 1 4 4 C 1.52998 * 109.47271 * 120.00125 * 2 1 3 5 5 C 1.52999 * 109.47303 * 184.99770 * 4 2 1 6 6 N 1.46505 * 109.47192 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99724 * 180.02562 * 6 5 4 8 8 O 1.21613 * 120.00252 * 359.97438 * 7 6 5 9 9 C 1.47104 * 119.99657 * 179.72600 * 7 6 5 10 10 C 1.32991 * 119.99958 * 180.27470 * 9 7 6 11 11 C 1.51411 * 136.31614 * 359.62841 * 10 9 7 12 12 C 1.53374 * 87.51543 * 206.05988 * 11 10 9 13 13 C 1.51402 * 136.31842 * 179.97438 * 10 9 7 14 14 N 1.46503 * 109.46960 * 239.99600 * 2 1 3 15 15 C 1.34774 * 119.99800 * 85.00229 * 14 2 1 16 16 O 1.21284 * 120.00028 * 359.97438 * 15 14 2 17 17 C 1.50703 * 119.99931 * 180.02562 * 15 14 2 18 18 S 1.81003 * 109.46957 * 179.97438 * 17 15 14 19 19 C 1.76206 * 99.99644 * 179.97438 * 18 17 15 20 20 H 1.07993 * 120.00052 * 359.97438 * 19 18 17 21 21 C 1.38794 * 119.99740 * 179.97438 * 19 18 17 22 22 N 1.31632 * 119.99884 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99947 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47329 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47213 * 120.00262 * 23 21 19 26 26 H 1.48502 * 109.47094 * 240.00166 * 23 21 19 27 27 H 1.09002 * 109.47122 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46818 * 300.00532 * 1 2 3 29 29 H 1.08995 * 109.46839 * 60.00098 * 1 2 3 30 30 H 1.09001 * 109.47719 * 64.99334 * 4 2 1 31 31 H 1.09007 * 109.46897 * 304.99964 * 4 2 1 32 32 H 1.09003 * 109.47128 * 60.00136 * 5 4 2 33 33 H 1.08993 * 109.47209 * 299.99855 * 5 4 2 34 34 H 0.97000 * 119.99792 * 359.97438 * 6 5 4 35 35 H 1.08002 * 119.99790 * 0.26959 * 9 7 6 36 36 H 1.09001 * 113.55483 * 320.63628 * 11 10 9 37 37 H 1.08990 * 113.55924 * 91.37080 * 11 10 9 38 38 H 1.09003 * 113.96661 * 220.29339 * 12 11 10 39 39 H 1.08995 * 113.60310 * 88.79227 * 12 11 10 40 40 H 1.08999 * 113.56280 * 268.63266 * 13 10 9 41 41 H 1.09010 * 113.55597 * 39.36011 * 13 10 9 42 42 H 0.97005 * 119.99839 * 265.00439 * 14 2 1 43 43 H 1.09005 * 109.46613 * 299.99483 * 17 15 14 44 44 H 1.08994 * 109.47088 * 59.99199 * 17 15 14 45 45 H 0.97008 * 119.99461 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6134 1.3136 6 7 4.0532 -1.3035 2.5101 7 6 5.3740 -1.3387 2.7758 8 8 6.1606 -0.7981 2.0221 9 6 5.8638 -2.0265 3.9804 10 6 7.1667 -2.0567 4.2455 11 6 8.4294 -1.5363 3.5917 12 6 9.1817 -2.6739 4.2934 13 6 8.0499 -2.6319 5.3323 14 7 2.0183 -0.6907 -1.1962 15 6 2.1470 -0.0184 -2.3571 16 8 1.8582 1.1583 -2.4117 17 6 2.6488 -0.7290 -3.5877 18 16 2.7091 0.4339 -4.9735 19 6 3.3124 -0.6315 -6.2407 20 1 3.5224 -1.6676 -6.0205 21 6 3.5176 -0.1389 -7.5220 22 7 3.2620 1.1242 -7.7903 23 14 4.1565 -1.2684 -8.8657 24 1 4.3626 -2.6304 -8.3110 25 1 3.1682 -1.3295 -9.9723 26 1 5.4460 -0.7433 -9.3821 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.7516 -1.7715 1.2057 31 1 1.6054 -0.2617 2.1370 32 1 3.8533 0.4369 1.3573 33 1 3.9994 -1.0729 0.4260 34 1 3.4258 -1.7344 3.1115 35 1 5.1653 -2.5069 4.6495 36 1 8.4253 -1.6240 2.5053 37 1 8.7208 -0.5440 3.9355 38 1 10.1543 -2.3828 4.6902 39 1 9.2148 -3.5971 3.7151 40 1 8.2373 -1.9398 6.1533 41 1 7.7346 -3.6181 5.6734 42 1 2.2489 -1.6319 -1.1525 43 1 3.6480 -1.1215 -3.3985 44 1 1.9759 -1.5508 -3.8324 45 1 3.4051 1.4684 -8.6859 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076118969.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:16 Heat of formation + Delta-G solvation = -75.200711 kcal Electronic energy + Delta-G solvation = -24056.569241 eV Core-core repulsion = 20392.803431 eV Total energy + Delta-G solvation = -3663.765811 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.01082 -40.67082 -39.27673 -37.63334 -35.57165 -34.60349 -33.11965 -32.02352 -30.29540 -29.56447 -27.67952 -26.69198 -25.26455 -23.60928 -22.55516 -21.77886 -21.49626 -19.87122 -19.25750 -18.04874 -17.91769 -17.30132 -16.99977 -16.89762 -16.55297 -16.39735 -16.24354 -15.84554 -15.44896 -15.13228 -14.83131 -14.78735 -14.45251 -14.38062 -13.98039 -13.35690 -13.32217 -13.18019 -13.03151 -12.95364 -12.92609 -12.67220 -12.60145 -12.43128 -12.40654 -11.93694 -11.91412 -11.71910 -11.49849 -11.17521 -10.92470 -10.73738 -10.35615 -10.29466 -10.13163 -9.92175 -8.68409 -8.36556 -6.14612 0.37297 1.25764 1.39867 1.45675 1.57157 1.62184 2.16688 2.24744 2.30429 2.31383 2.97436 3.30651 3.38489 3.58122 3.74165 3.81524 3.86851 4.01165 4.07803 4.19649 4.24979 4.27337 4.42741 4.47678 4.49218 4.59832 4.63136 4.73114 4.81878 4.84957 4.88923 4.93305 5.02593 5.03053 5.13273 5.25988 5.33443 5.33905 5.40105 5.43131 5.55795 5.66942 6.18239 6.51203 6.62330 7.04650 7.26344 7.30150 8.73000 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011467 B = 0.002223 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2441.215822 B =12592.014692 C =14582.761420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.141 3.859 3 H 0.063 0.937 4 C -0.116 4.116 5 C 0.119 3.881 6 N -0.710 5.710 7 C 0.535 3.465 8 O -0.594 6.594 9 C -0.206 4.206 10 C -0.073 4.073 11 C -0.125 4.125 12 C -0.137 4.137 13 C -0.092 4.092 14 N -0.710 5.710 15 C 0.535 3.465 16 O -0.565 6.565 17 C -0.131 4.131 18 S -0.152 6.152 19 C -0.546 4.546 20 H 0.082 0.918 21 C 0.011 3.989 22 N -0.911 5.911 23 Si 1.000 3.000 24 H -0.257 1.257 25 H -0.272 1.272 26 H -0.274 1.274 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.030 0.970 30 H 0.106 0.894 31 H 0.114 0.886 32 H 0.044 0.956 33 H 0.050 0.950 34 H 0.420 0.580 35 H 0.171 0.829 36 H 0.053 0.947 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.118 0.882 41 H 0.097 0.903 42 H 0.414 0.586 43 H 0.103 0.897 44 H 0.111 0.889 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.064 -13.586 32.332 35.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.036 3.964 3 H 0.081 0.919 4 C -0.154 4.154 5 C -0.006 4.006 6 N -0.362 5.362 7 C 0.326 3.674 8 O -0.476 6.476 9 C -0.227 4.227 10 C -0.075 4.075 11 C -0.162 4.162 12 C -0.174 4.174 13 C -0.128 4.128 14 N -0.364 5.364 15 C 0.320 3.680 16 O -0.443 6.443 17 C -0.282 4.282 18 S 0.075 5.925 19 C -0.694 4.694 20 H 0.100 0.900 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.822 3.178 24 H -0.181 1.181 25 H -0.197 1.197 26 H -0.200 1.200 27 H 0.096 0.904 28 H 0.107 0.893 29 H 0.049 0.951 30 H 0.124 0.876 31 H 0.133 0.867 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.258 0.742 35 H 0.188 0.812 36 H 0.072 0.928 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.102 0.898 40 H 0.136 0.864 41 H 0.116 0.884 42 H 0.251 0.749 43 H 0.122 0.878 44 H 0.129 0.871 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.096 -11.127 31.618 33.585 hybrid contribution 0.508 -1.765 -1.212 2.200 sum 2.604 -12.892 30.406 33.129 Atomic orbital electron populations 1.22116 0.93751 1.03283 1.02316 1.20995 0.95060 0.96775 0.83537 0.91920 1.21993 0.92205 1.03610 0.97613 1.21263 0.95353 0.96433 0.87519 1.45692 1.07095 1.56609 1.26815 1.19123 0.82484 0.79671 0.86162 1.90806 1.56764 1.48205 1.51863 1.21742 0.95298 1.06943 0.98675 1.23931 0.93181 0.92529 0.97826 1.22348 0.93809 0.99885 1.00149 1.22741 0.98649 0.98226 0.97817 1.22358 0.92448 1.02477 0.95550 1.45917 1.67505 1.14504 1.08505 1.20009 0.76650 0.86578 0.84736 1.90686 1.50710 1.17709 1.85202 1.23389 1.05258 1.03287 0.96304 1.85558 1.86647 1.17481 1.02785 1.23231 1.50904 0.98423 0.96805 0.90027 1.26158 0.95084 0.97278 1.00804 1.70197 1.46864 1.15476 1.22218 0.84884 0.77856 0.78136 0.76928 1.18092 1.19704 1.19953 0.90398 0.89282 0.95116 0.87571 0.86744 0.93796 0.93170 0.74167 0.81195 0.92788 0.88442 0.88839 0.89794 0.86381 0.88438 0.74886 0.87844 0.87119 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 9.48 71.98 0.68 -2.14 16 2 C 0.14 2.86 2.57 44.99 0.12 2.97 16 3 H 0.06 1.68 7.58 -2.39 -0.02 1.66 16 4 C -0.12 -1.29 4.87 30.59 0.15 -1.14 16 5 C 0.12 2.19 5.56 86.38 0.48 2.67 16 6 N -0.71 -10.36 5.55 -466.70 -2.59 -12.96 16 7 C 0.54 11.57 7.76 86.57 0.67 12.24 16 8 O -0.59 -19.40 15.15 -4.07 -0.06 -19.46 16 9 C -0.21 -2.95 10.03 23.43 0.23 -2.71 16 10 C -0.07 -1.09 6.93 -17.17 -0.12 -1.21 16 11 C -0.12 -2.22 6.99 30.06 0.21 -2.01 16 12 C -0.14 -1.47 8.17 30.95 0.25 -1.22 16 13 C -0.09 -0.72 7.96 30.16 0.24 -0.48 16 14 N -0.71 -17.65 4.53 -442.53 -2.00 -19.65 16 15 C 0.53 20.22 7.81 87.66 0.68 20.91 16 16 O -0.56 -26.79 15.53 -3.04 -0.05 -26.84 16 17 C -0.13 -5.41 6.16 71.24 0.44 -4.97 16 18 S -0.15 -8.70 20.57 -56.49 -1.16 -9.86 16 19 C -0.55 -32.05 9.50 67.95 0.65 -31.40 16 20 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 21 C 0.01 0.66 5.49 84.86 0.47 1.13 16 22 N -0.91 -57.16 13.22 21.65 0.29 -56.87 16 23 Si 1.00 44.70 29.55 68.60 2.03 46.72 16 24 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 26 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 27 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 29 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.11 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.05 1.16 7.75 -2.39 -0.02 1.14 16 34 H 0.42 2.47 8.46 -92.71 -0.78 1.69 16 35 H 0.17 0.99 8.06 -2.91 -0.02 0.96 16 36 H 0.05 1.31 7.49 -2.39 -0.02 1.29 16 37 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.10 0.45 8.14 -2.38 -0.02 0.43 16 42 H 0.41 7.52 8.60 -92.70 -0.80 6.72 16 43 H 0.10 3.96 8.14 -2.39 -0.02 3.94 16 44 H 0.11 4.07 8.14 -2.40 -0.02 4.05 16 45 H 0.27 15.72 8.31 -92.70 -0.77 14.95 16 Total: -1.00 -89.10 394.60 1.02 -88.08 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -0.58 Total: 18.20 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: 5.15 Total: -7.37 kcal Atomic # 7 Polarization: -85.17 SS G_CDS: -4.31 Total: -89.48 kcal Atomic # 8 Polarization: -46.19 SS G_CDS: -0.11 Total: -46.30 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.16 Total: -9.86 kcal Total: -89.10 1.02 -88.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076118969.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.883 kcal (2) G-P(sol) polarization free energy of solvation -89.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds