Wall clock time and date at job start Tue Mar 31 2020 15:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 C 1.52995 * 109.47187 * 119.99498 * 2 1 3 5 5 C 1.53000 * 109.47152 * 185.00354 * 4 2 1 6 6 N 1.46498 * 109.47226 * 180.02562 * 5 4 2 7 7 C 1.34776 * 120.00351 * 180.02562 * 6 5 4 8 8 O 1.21612 * 119.99682 * 359.97438 * 7 6 5 9 9 C 1.47099 * 120.00465 * 179.97438 * 7 6 5 10 10 C 1.32611 * 124.62091 * 179.69793 * 9 7 6 11 11 C 1.51117 * 110.75709 * 179.84211 * 10 9 7 12 12 C 1.54571 * 104.89974 * 343.80443 * 11 10 9 13 13 C 1.51110 * 124.61944 * 359.97438 * 9 7 6 14 14 N 1.46496 * 109.47129 * 240.00164 * 2 1 3 15 15 C 1.34777 * 120.00258 * 85.00009 * 14 2 1 16 16 O 1.21279 * 120.00166 * 359.97438 * 15 14 2 17 17 C 1.50706 * 119.99762 * 179.97438 * 15 14 2 18 18 S 1.81003 * 109.46853 * 179.97438 * 17 15 14 19 19 C 1.76196 * 99.99846 * 179.97438 * 18 17 15 20 20 H 1.07998 * 120.00030 * 359.97438 * 19 18 17 21 21 C 1.38802 * 119.99637 * 180.02562 * 19 18 17 22 22 N 1.31633 * 119.99688 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 120.00457 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47357 * 89.99660 * 23 21 19 25 25 H 1.48495 * 109.47496 * 209.99879 * 23 21 19 26 26 H 1.48500 * 109.46916 * 330.00121 * 23 21 19 27 27 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47302 * 300.00204 * 1 2 3 29 29 H 1.09006 * 109.47229 * 60.00541 * 1 2 3 30 30 H 1.08994 * 109.47690 * 305.00545 * 4 2 1 31 31 H 1.09003 * 109.47048 * 65.00365 * 4 2 1 32 32 H 1.09004 * 109.46980 * 300.00055 * 5 4 2 33 33 H 1.08995 * 109.47311 * 60.00363 * 5 4 2 34 34 H 0.97007 * 119.99883 * 359.97438 * 6 5 4 35 35 H 1.08004 * 124.62196 * 359.97438 * 10 9 7 36 36 H 1.08996 * 110.51666 * 224.84631 * 11 10 9 37 37 H 1.09002 * 110.24492 * 102.61424 * 11 10 9 38 38 H 1.09004 * 110.98265 * 266.70796 * 12 11 10 39 39 H 1.09011 * 110.98577 * 142.91354 * 12 11 10 40 40 H 1.09001 * 110.36535 * 315.44180 * 13 9 7 41 41 H 1.08996 * 110.36841 * 77.75574 * 13 9 7 42 42 H 0.96999 * 119.99694 * 264.99399 * 14 2 1 43 43 H 1.09000 * 109.47318 * 299.99141 * 17 15 14 44 44 H 1.09000 * 109.47161 * 59.99772 * 17 15 14 45 45 H 0.97002 * 120.00245 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6131 1.3137 6 7 4.0532 -1.3041 2.5096 7 6 5.3741 -1.3394 2.7753 8 8 6.1605 -0.7981 2.0221 9 6 5.8644 -2.0328 3.9764 10 6 7.1410 -2.1288 4.3225 11 6 7.2896 -2.9030 5.6117 12 6 5.8734 -2.9196 6.2309 13 6 4.9827 -2.7378 4.9809 14 7 2.0183 -0.6906 -1.1962 15 6 2.1471 -0.0182 -2.3571 16 8 1.8582 1.1584 -2.4118 17 6 2.6500 -0.7286 -3.5874 18 16 2.7100 0.4342 -4.9733 19 6 3.3147 -0.6306 -6.2401 20 1 3.5255 -1.6666 -6.0197 21 6 3.5211 -0.1376 -7.5211 22 7 3.9724 -0.9333 -8.4677 23 14 3.1586 1.6548 -7.9018 24 1 4.3772 2.4685 -7.6605 25 1 2.7493 1.7861 -9.3232 26 1 2.0611 2.1350 -7.0243 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 1.6054 -0.2617 2.1370 31 1 1.7517 -1.7714 1.2056 32 1 3.9995 -1.0726 0.4260 33 1 3.8531 0.4372 1.3574 34 1 3.4259 -1.7356 3.1107 35 1 7.9623 -1.7090 3.7607 36 1 7.9899 -2.4018 6.2798 37 1 7.6250 -3.9193 5.4049 38 1 5.7421 -2.0913 6.9272 39 1 5.6717 -3.8734 6.7187 40 1 4.1142 -2.1240 5.2199 41 1 4.6683 -3.7074 4.5950 42 1 2.2491 -1.6317 -1.1525 43 1 3.6494 -1.1203 -3.3979 44 1 1.9778 -1.5509 -3.8325 45 1 4.1164 -0.5889 -9.3630 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076138829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:14 Heat of formation + Delta-G solvation = -77.316256 kcal Electronic energy + Delta-G solvation = -24261.608643 eV Core-core repulsion = 20597.751095 eV Total energy + Delta-G solvation = -3663.857548 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.34579 -39.53441 -38.17879 -36.64728 -34.70896 -32.41574 -31.96352 -30.32871 -29.34742 -28.70689 -28.35646 -25.58967 -24.20065 -22.23414 -21.64135 -21.12826 -20.42919 -19.12496 -17.84864 -17.54725 -16.70860 -16.46353 -16.10264 -15.93196 -15.35695 -15.13852 -14.93805 -14.76798 -14.26531 -13.70102 -13.62425 -13.40501 -13.32239 -13.21161 -12.96132 -12.77243 -12.49510 -12.26778 -12.13996 -12.04740 -11.86160 -11.70917 -11.68199 -11.57490 -11.24169 -11.14390 -10.98342 -10.57502 -10.19108 -9.83437 -9.50277 -9.49139 -9.27944 -9.01591 -8.95865 -8.47563 -6.88959 -6.26504 -3.97945 1.01138 2.78366 2.86231 2.99037 3.00538 3.31906 3.36464 3.52551 3.67380 3.99895 4.06220 4.35483 4.41222 4.46540 4.51058 4.64799 4.69326 4.78945 4.80932 5.12446 5.13120 5.15671 5.17921 5.21615 5.23294 5.29350 5.31609 5.34988 5.44193 5.53693 5.59741 5.63616 5.71489 5.79354 5.88147 5.93075 6.04309 6.09051 6.10563 6.12550 6.57304 7.19109 7.61380 7.95063 7.96592 8.44219 8.50894 9.19694 10.82741 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.017087 B = 0.002126 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.274241 B =13166.023086 C =14288.795376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.092 0.908 4 C -0.137 4.137 5 C 0.116 3.884 6 N -0.727 5.727 7 C 0.562 3.438 8 O -0.536 6.536 9 C -0.198 4.198 10 C -0.071 4.071 11 C -0.109 4.109 12 C -0.123 4.123 13 C -0.090 4.090 14 N -0.734 5.734 15 C 0.533 3.467 16 O -0.518 6.518 17 C -0.125 4.125 18 S -0.142 6.142 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.881 5.881 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.399 0.601 35 H 0.139 0.861 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.398 0.602 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.620 -6.448 32.679 33.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.110 0.890 4 C -0.176 4.176 5 C -0.007 4.007 6 N -0.378 5.378 7 C 0.350 3.650 8 O -0.414 6.414 9 C -0.201 4.201 10 C -0.090 4.090 11 C -0.146 4.146 12 C -0.161 4.161 13 C -0.127 4.127 14 N -0.389 5.389 15 C 0.319 3.681 16 O -0.393 6.393 17 C -0.276 4.276 18 S 0.085 5.915 19 C -0.668 4.668 20 H 0.106 0.894 21 C -0.114 4.114 22 N -0.517 5.517 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.159 1.159 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.234 0.766 35 H 0.157 0.843 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.232 0.768 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.505 -4.100 31.837 32.135 hybrid contribution 0.119 -1.443 -0.153 1.456 sum -1.386 -5.543 31.684 32.195 Atomic orbital electron populations 1.22172 0.94932 1.02171 1.02831 1.20787 0.94193 0.97734 0.83158 0.89040 1.22106 0.94584 1.02104 0.98765 1.21429 0.93561 0.98076 0.87682 1.45888 1.07425 1.57286 1.27223 1.18006 0.82188 0.79807 0.84964 1.90848 1.55474 1.45759 1.49306 1.21825 0.96652 1.04117 0.97538 1.24105 0.96616 0.92721 0.95582 1.21501 0.98227 1.00439 0.94406 1.22428 0.94147 1.02578 0.96940 1.21239 0.97944 1.00020 0.93534 1.46089 1.69287 1.13965 1.09510 1.20269 0.76791 0.87211 0.83843 1.90695 1.48420 1.15726 1.84431 1.23290 1.04488 1.03467 0.96319 1.84773 1.87092 1.16927 1.02738 1.22321 1.50336 0.98815 0.95378 0.89402 1.24721 0.93379 0.98302 0.94968 1.69942 1.43404 1.35813 1.02564 0.86725 0.81124 0.84857 0.79086 1.19198 1.19970 1.15938 0.92458 0.91818 0.91470 0.89702 0.90550 0.90786 0.91035 0.76620 0.84334 0.90072 0.89516 0.90761 0.90421 0.90888 0.90205 0.76752 0.88506 0.88505 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.48 37.16 0.35 -1.17 16 2 C 0.15 1.48 2.57 -67.94 -0.17 1.30 16 3 H 0.09 1.12 7.58 -51.93 -0.39 0.73 16 4 C -0.14 -0.91 4.87 -26.73 -0.13 -1.04 16 5 C 0.12 1.07 5.56 -4.04 -0.02 1.05 16 6 N -0.73 -5.90 5.55 -61.49 -0.34 -6.25 16 7 C 0.56 6.23 7.79 -12.67 -0.10 6.13 16 8 O -0.54 -8.49 16.77 5.27 0.09 -8.40 16 9 C -0.20 -1.61 6.09 -102.73 -0.63 -2.24 16 10 C -0.07 -0.53 10.43 -36.01 -0.38 -0.91 16 11 C -0.11 -0.51 6.80 -26.85 -0.18 -0.69 16 12 C -0.12 -0.48 7.16 -25.09 -0.18 -0.66 16 13 C -0.09 -0.43 6.02 -26.86 -0.16 -0.59 16 14 N -0.73 -8.89 4.53 -53.81 -0.24 -9.13 16 15 C 0.53 9.35 7.81 -10.98 -0.09 9.26 16 16 O -0.52 -11.05 15.53 5.56 0.09 -10.97 16 17 C -0.12 -2.44 6.16 36.01 0.22 -2.22 16 18 S -0.14 -3.64 18.55 -107.50 -1.99 -5.64 16 19 C -0.52 -15.23 10.04 30.94 0.31 -14.92 16 20 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 21 C 0.09 2.81 5.50 -17.43 -0.10 2.72 16 22 N -0.88 -26.90 13.97 55.49 0.78 -26.12 16 23 Si 0.86 22.12 27.74 -169.99 -4.72 17.40 16 24 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.24 -6.05 6.74 56.52 0.38 -5.67 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.82 7.75 -51.93 -0.40 0.42 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.40 1.97 7.48 -40.82 -0.31 1.66 16 35 H 0.14 1.14 8.03 -52.48 -0.42 0.72 16 36 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.08 0.21 8.14 -51.92 -0.42 -0.21 16 40 H 0.07 0.27 7.83 -51.93 -0.41 -0.14 16 41 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.40 3.79 8.60 -40.82 -0.35 3.44 16 43 H 0.10 1.79 8.14 -51.92 -0.42 1.37 16 44 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 45 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 389.33 15.07 5.87 5.87 Total: -1.00 -37.32 389.33 -9.08 -46.39 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -7.35 Total: 0.81 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -1.25 Total: -3.97 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: 0.19 Total: -41.50 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: 0.17 Total: -19.37 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.72 Total: 17.40 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.32 -9.08 -46.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076138829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.922 kcal (2) G-P(sol) polarization free energy of solvation -37.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds