Wall clock time and date at job start Tue Mar 31 2020 15:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.53001 * 109.46508 * 119.99286 * 2 1 3 5 5 C 1.53006 * 109.46654 * 184.99930 * 4 2 1 6 6 N 1.46505 * 109.46975 * 180.02562 * 5 4 2 7 7 C 1.34773 * 119.99859 * 180.02562 * 6 5 4 8 8 O 1.21285 * 119.99944 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.00119 * 179.97438 * 7 6 5 10 10 H 1.09003 * 115.54693 * 34.27415 * 9 7 6 11 11 C 1.53003 * 117.50011 * 248.61091 * 9 7 6 12 12 C 1.52990 * 117.50178 * 179.97438 * 9 7 6 13 13 C 1.52990 * 138.58745 * 336.59350 * 12 9 7 14 14 C 1.52995 * 138.58617 * 238.38298 * 12 9 7 15 15 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 16 16 C 1.34777 * 119.99525 * 84.99977 * 15 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 2 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99674 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00584 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46793 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47282 * 119.99523 * 24 22 20 27 27 H 1.48500 * 109.47237 * 240.00020 * 24 22 20 28 28 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 30 30 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 31 31 H 1.09000 * 109.47404 * 304.99977 * 4 2 1 32 32 H 1.09001 * 109.47466 * 65.00446 * 4 2 1 33 33 H 1.09000 * 109.47254 * 300.00139 * 5 4 2 34 34 H 1.09001 * 109.46763 * 60.00085 * 5 4 2 35 35 H 0.97001 * 119.99746 * 359.97438 * 6 5 4 36 36 H 1.08994 * 117.49925 * 359.97438 * 11 9 7 37 37 H 1.08996 * 117.50062 * 144.99714 * 11 9 7 38 38 H 1.09002 * 117.50170 * 336.59952 * 13 12 9 39 39 H 1.09000 * 117.49927 * 121.62039 * 13 12 9 40 40 H 1.09004 * 117.49846 * 238.37591 * 14 12 9 41 41 H 1.08998 * 117.49954 * 23.37984 * 14 12 9 42 42 H 0.97000 * 120.00580 * 265.00723 * 15 2 1 43 43 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 44 44 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 45 45 H 0.97003 * 120.00297 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5648 -0.6132 1.3138 6 7 4.0531 -1.3042 2.5098 7 6 5.3739 -1.3396 2.7755 8 8 6.1583 -0.7998 2.0242 9 6 5.8763 -2.0499 4.0060 10 1 5.3154 -2.9377 4.2982 11 6 6.4724 -1.1914 5.1234 12 6 7.3863 -2.0553 4.2517 13 6 8.6800 -1.9086 3.4483 14 6 8.5163 -3.0713 4.4291 15 7 2.0185 -0.6908 -1.1960 16 6 2.1472 -0.0185 -2.3570 17 8 1.8591 1.1584 -2.4116 18 6 2.6554 -0.7275 -3.5859 19 16 2.7226 0.4369 -4.9699 20 6 3.3326 -0.6266 -6.2353 21 1 3.5410 -1.6633 -6.0155 22 6 3.5443 -0.1325 -7.5150 23 7 3.2888 1.1306 -7.7834 24 14 4.1903 -1.2601 -8.8567 25 1 4.3951 -2.6225 -8.3022 26 1 3.2076 -1.3203 -9.9685 27 1 5.4823 -0.7341 -9.3659 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8898 30 1 -0.3633 0.5137 -0.8900 31 1 1.6053 -0.2615 2.1370 32 1 1.7516 -1.7714 1.2059 33 1 3.9995 -1.0728 0.4262 34 1 3.8531 0.4371 1.3574 35 1 3.4257 -1.7356 3.1109 36 1 6.5016 -0.1129 4.9684 37 1 6.3038 -1.5144 6.1507 38 1 8.6402 -2.1388 2.3836 39 1 9.3591 -1.1040 3.7304 40 1 9.0878 -3.0317 5.3565 41 1 8.3686 -4.0667 4.0101 42 1 2.2491 -1.6319 -1.1524 43 1 3.6539 -1.1197 -3.3923 44 1 1.9842 -1.5494 -3.8349 45 1 3.4371 1.4761 -8.6776 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078729632.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:26 Heat of formation + Delta-G solvation = -27.274988 kcal Electronic energy + Delta-G solvation = -24195.795645 eV Core-core repulsion = 20534.108049 eV Total energy + Delta-G solvation = -3661.687595 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.31182 -39.43350 -37.93519 -36.51778 -34.61586 -33.02219 -32.40760 -31.78836 -29.46610 -28.46045 -25.47052 -25.11901 -22.95750 -22.71424 -21.60685 -20.77838 -20.32460 -19.47226 -17.84815 -17.38691 -16.59791 -16.36362 -16.02136 -15.52907 -15.30419 -15.12944 -14.89070 -14.78414 -14.53867 -14.18750 -13.73110 -13.61253 -13.22918 -12.94278 -12.82941 -12.63312 -12.15694 -12.11730 -11.93546 -11.81740 -11.70692 -11.54036 -11.09159 -11.04840 -10.99541 -10.73510 -10.60181 -10.51365 -10.37830 -9.97939 -9.78393 -9.37286 -9.35643 -9.05792 -8.90382 -8.20823 -6.47381 -6.19729 -3.89838 2.21341 2.70373 3.04834 3.11509 3.23256 3.29789 3.32708 3.34596 3.44309 3.72859 3.89249 4.22383 4.32983 4.41216 4.46600 4.62147 4.72842 4.74467 5.04537 5.12875 5.15501 5.17051 5.22755 5.25336 5.27839 5.31041 5.31360 5.35558 5.51718 5.56076 5.61885 5.63618 5.67984 5.76922 5.86289 5.91406 6.00504 6.12560 6.15879 6.17876 6.66157 7.19592 7.62008 7.71394 7.98246 8.37579 8.63326 9.25781 10.87771 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.011943 B = 0.002276 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.834774 B =12297.017116 C =14175.241200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.146 3.854 3 H 0.091 0.909 4 C -0.137 4.137 5 C 0.117 3.883 6 N -0.729 5.729 7 C 0.537 3.463 8 O -0.527 6.527 9 C -0.143 4.143 10 H 0.123 0.877 11 C -0.101 4.101 12 C -0.203 4.203 13 C -0.113 4.113 14 C -0.130 4.130 15 N -0.736 5.736 16 C 0.534 3.466 17 O -0.516 6.516 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.534 4.534 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.400 0.600 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.397 0.603 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.338 -9.964 29.347 31.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.109 0.891 4 C -0.175 4.175 5 C -0.007 4.007 6 N -0.381 5.381 7 C 0.322 3.678 8 O -0.402 6.402 9 C -0.164 4.164 10 H 0.141 0.859 11 C -0.138 4.138 12 C -0.203 4.203 13 C -0.150 4.150 14 C -0.166 4.166 15 N -0.391 5.391 16 C 0.320 3.680 17 O -0.390 6.390 18 C -0.305 4.305 19 S 0.166 5.834 20 C -0.682 4.682 21 H 0.091 0.909 22 C -0.137 4.137 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.233 0.767 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.231 0.769 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.423 -7.433 28.549 29.535 hybrid contribution 0.359 -2.831 -0.528 2.903 sum 1.782 -10.264 28.020 29.894 Atomic orbital electron populations 1.22172 0.95011 1.02083 1.02833 1.20778 0.94154 0.97753 0.83232 0.89073 1.22103 0.94549 1.02033 0.98807 1.21421 0.93584 0.98030 0.87618 1.45947 1.07361 1.57577 1.27234 1.19715 0.82116 0.79961 0.85966 1.90754 1.55354 1.45060 1.49037 1.21963 0.95310 1.02322 0.96795 0.85875 1.22665 0.98864 0.97666 0.94574 1.21163 0.87424 1.05835 1.05913 1.22627 0.95054 0.99505 0.97771 1.22777 0.97855 0.94581 1.01415 1.46127 1.69512 1.13869 1.09565 1.20296 0.76733 0.87210 0.83752 1.90699 1.48289 1.15696 1.84350 1.23539 1.03633 1.04862 0.98449 1.85385 1.86017 1.12957 0.99009 1.22907 1.50673 0.98168 0.96488 0.90908 1.24998 0.95145 0.95549 0.97969 1.70031 1.45610 1.13188 1.21470 0.86113 0.78534 0.80132 0.80691 1.19636 1.20582 1.20559 0.92547 0.91878 0.91424 0.89741 0.90643 0.90892 0.91114 0.76653 0.88030 0.87551 0.88028 0.88413 0.88293 0.88486 0.76942 0.89247 0.89288 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.48 37.16 0.35 -1.26 16 2 C 0.15 1.56 2.57 -67.93 -0.17 1.38 16 3 H 0.09 1.18 7.58 -51.93 -0.39 0.79 16 4 C -0.14 -0.95 4.87 -26.73 -0.13 -1.08 16 5 C 0.12 1.10 5.56 -4.04 -0.02 1.08 16 6 N -0.73 -5.72 5.56 -60.29 -0.33 -6.06 16 7 C 0.54 5.69 7.61 -10.99 -0.08 5.61 16 8 O -0.53 -8.09 16.25 5.55 0.09 -8.00 16 9 C -0.14 -1.09 6.19 -91.78 -0.57 -1.66 16 10 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 11 C -0.10 -0.68 10.24 -26.72 -0.27 -0.95 16 12 C -0.20 -1.71 5.05 -154.51 -0.78 -2.49 16 13 C -0.11 -1.01 10.16 -26.74 -0.27 -1.28 16 14 C -0.13 -0.88 10.53 -26.73 -0.28 -1.16 16 15 N -0.74 -9.42 4.53 -53.80 -0.24 -9.66 16 16 C 0.53 9.88 7.81 -10.98 -0.09 9.80 16 17 O -0.52 -11.63 15.52 5.55 0.09 -11.54 16 18 C -0.15 -3.15 6.16 36.01 0.22 -2.93 16 19 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 20 C -0.53 -15.43 9.50 30.94 0.29 -15.13 16 21 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.47 13.22 55.49 0.73 -25.74 16 24 Si 0.92 21.72 29.55 -169.99 -5.02 16.69 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.83 7.75 -51.93 -0.40 0.43 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.40 1.78 8.47 -40.82 -0.35 1.44 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.40 4.01 8.60 -40.82 -0.35 3.66 16 43 H 0.09 1.72 8.14 -51.91 -0.42 1.29 16 44 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 45 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 398.41 15.07 6.00 6.00 Total: -1.00 -37.59 398.41 -10.18 -47.77 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -7.38 Total: 2.48 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -1.90 Total: -8.07 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: 0.16 Total: -41.46 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: 0.18 Total: -19.54 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.59 -10.18 -47.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078729632.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.493 kcal (2) G-P(sol) polarization free energy of solvation -37.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds