Wall clock time and date at job start Tue Mar 31 2020 15:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47095 * 2 1 4 4 C 1.52995 * 109.46826 * 120.00871 * 2 1 3 5 5 C 1.53005 * 109.46961 * 185.00048 * 4 2 1 6 6 N 1.46495 * 109.47292 * 179.97438 * 5 4 2 7 7 C 1.34778 * 120.00534 * 179.97438 * 6 5 4 8 8 O 1.21284 * 119.99314 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.00346 * 180.02562 * 7 6 5 10 10 H 1.09002 * 115.55180 * 325.58428 * 9 7 6 11 11 C 1.53001 * 117.51704 * 111.28562 * 9 7 6 12 12 C 1.52991 * 117.49917 * 179.91285 * 9 7 6 13 13 C 1.53001 * 138.58964 * 121.58989 * 12 9 7 14 14 C 1.53000 * 60.00037 * 229.11382 * 13 12 9 15 15 N 1.46508 * 109.46945 * 240.00692 * 2 1 3 16 16 C 1.34768 * 120.00194 * 84.99969 * 15 2 1 17 17 O 1.21280 * 119.99939 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99998 * 179.97438 * 16 15 2 19 19 S 1.81000 * 109.47216 * 180.02562 * 18 16 15 20 20 C 1.76198 * 99.99903 * 180.02562 * 19 18 16 21 21 H 1.08000 * 120.00430 * 359.97438 * 20 19 18 22 22 C 1.38810 * 119.99793 * 179.97438 * 20 19 18 23 23 N 1.31629 * 119.99756 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 119.99692 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47336 * 60.00360 * 24 22 20 26 26 H 1.48505 * 109.47014 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47481 * 299.99702 * 24 22 20 28 28 H 1.08990 * 109.47512 * 299.99508 * 1 2 3 29 29 H 1.09003 * 109.46834 * 59.99847 * 1 2 3 30 30 H 1.08998 * 109.47172 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47682 * 65.00237 * 4 2 1 32 32 H 1.09007 * 109.47046 * 304.99507 * 4 2 1 33 33 H 1.09000 * 109.47176 * 59.99950 * 5 4 2 34 34 H 1.08994 * 109.46762 * 299.99947 * 5 4 2 35 35 H 0.97006 * 119.99979 * 0.02562 * 6 5 4 36 36 H 1.09004 * 117.49834 * 214.96873 * 11 9 7 37 37 H 1.09005 * 117.50045 * 359.97438 * 11 9 7 38 38 H 1.08998 * 117.49651 * 336.60366 * 13 12 9 39 39 H 1.08996 * 117.49630 * 121.62132 * 13 12 9 40 40 H 1.08998 * 117.49727 * 252.51693 * 14 13 12 41 41 H 1.08999 * 117.51847 * 107.48309 * 14 13 12 42 42 H 0.97000 * 119.99189 * 264.99771 * 15 2 1 43 43 H 1.08999 * 109.47365 * 300.00257 * 18 16 15 44 44 H 1.08998 * 109.47083 * 60.00414 * 18 16 15 45 45 H 0.96997 * 119.99492 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 1.2491 5 6 3.5648 -0.6135 1.3136 6 7 4.0531 -1.3037 2.5100 7 6 5.3740 -1.3399 2.7753 8 8 6.1584 -0.8006 2.0237 9 6 5.8763 -2.0505 4.0056 10 1 5.2255 -1.9964 4.8784 11 6 6.6780 -3.3374 3.8009 12 6 7.3865 -2.0579 4.2500 13 6 8.3767 -1.6125 5.3279 14 6 8.6152 -1.2312 3.8655 15 7 2.0183 -0.6905 -1.1963 16 6 2.1470 -0.0181 -2.3572 17 8 1.8591 1.1588 -2.4114 18 6 2.6499 -0.7283 -3.5876 19 16 2.7113 0.4350 -4.9729 20 6 3.3143 -0.6302 -6.2403 21 1 3.5237 -1.6666 -6.0204 22 6 3.5202 -0.1372 -7.5215 23 7 3.2645 1.1259 -7.7896 24 14 4.1601 -1.2663 -8.8649 25 1 3.2094 -2.3901 -9.0615 26 1 4.2920 -0.5029 -10.1319 27 1 5.4869 -1.8036 -8.4698 28 1 -0.3634 0.5137 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.7516 -1.7717 1.2054 32 1 1.6053 -0.2619 2.1369 33 1 3.8532 0.4368 1.3574 34 1 3.9994 -1.0729 0.4259 35 1 3.4257 -1.7354 3.1109 36 1 6.5547 -4.1300 4.5390 37 1 6.8420 -3.6707 2.7761 38 1 8.0583 -0.8227 6.0084 39 1 9.0248 -2.3740 5.7616 40 1 9.4201 -1.7420 3.3371 41 1 8.4536 -0.1908 3.5835 42 1 2.2490 -1.6317 -1.1527 43 1 3.6492 -1.1201 -3.3980 44 1 1.9776 -1.5505 -3.8327 45 1 3.4088 1.4704 -8.6847 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078729633.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:28 Heat of formation + Delta-G solvation = -27.192853 kcal Electronic energy + Delta-G solvation = -24198.520693 eV Core-core repulsion = 20536.836659 eV Total energy + Delta-G solvation = -3661.684034 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.31187 -39.43393 -37.93665 -36.51843 -34.61608 -33.02338 -32.40535 -31.78826 -29.46562 -28.46075 -25.46535 -25.11794 -22.95640 -22.72042 -21.60645 -20.77273 -20.32730 -19.47273 -17.84242 -17.39156 -16.60199 -16.36234 -15.94643 -15.66276 -15.33075 -14.98758 -14.93629 -14.78194 -14.49586 -14.23984 -13.77897 -13.55290 -13.22457 -12.94972 -12.82845 -12.62760 -12.15056 -12.12331 -11.93582 -11.82092 -11.70858 -11.54088 -11.09075 -11.02089 -11.01441 -10.74553 -10.60172 -10.51430 -10.37837 -9.98009 -9.80051 -9.37230 -9.35717 -9.04106 -8.90258 -8.21551 -6.47257 -6.19188 -3.89509 2.21434 2.70187 3.04896 3.11573 3.25428 3.29220 3.32818 3.32988 3.44181 3.72816 3.89306 4.22893 4.33123 4.41005 4.46597 4.62639 4.71076 4.75428 5.04570 5.13322 5.15791 5.17112 5.22672 5.26255 5.26902 5.30604 5.31431 5.35668 5.53090 5.55927 5.61997 5.63062 5.68054 5.76922 5.85235 5.91458 6.00565 6.12603 6.15926 6.17928 6.66149 7.19524 7.61613 7.71499 7.98206 8.37422 8.63401 9.25955 10.88205 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.012102 B = 0.002255 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.161856 B =12411.738588 C =14118.543215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.146 3.854 3 H 0.091 0.909 4 C -0.137 4.137 5 C 0.117 3.883 6 N -0.729 5.729 7 C 0.537 3.463 8 O -0.527 6.527 9 C -0.143 4.143 10 H 0.123 0.877 11 C -0.100 4.100 12 C -0.203 4.203 13 C -0.130 4.130 14 C -0.113 4.113 15 N -0.736 5.736 16 C 0.534 3.466 17 O -0.516 6.516 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.400 0.600 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.397 0.603 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.426 -10.236 29.164 30.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.109 0.891 4 C -0.175 4.175 5 C -0.007 4.007 6 N -0.381 5.381 7 C 0.322 3.678 8 O -0.402 6.402 9 C -0.164 4.164 10 H 0.141 0.859 11 C -0.137 4.137 12 C -0.203 4.203 13 C -0.166 4.166 14 C -0.150 4.150 15 N -0.391 5.391 16 C 0.320 3.680 17 O -0.390 6.390 18 C -0.305 4.305 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.233 0.767 36 H 0.125 0.875 37 H 0.120 0.880 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.231 0.769 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.510 -7.692 28.363 29.426 hybrid contribution 0.350 -2.771 -0.474 2.833 sum 1.860 -10.463 27.889 29.845 Atomic orbital electron populations 1.22171 0.95008 1.02090 1.02831 1.20777 0.94157 0.97754 0.83230 0.89081 1.22102 0.94546 1.02045 0.98800 1.21417 0.93586 0.98020 0.87627 1.45948 1.07379 1.57466 1.27328 1.19717 0.82115 0.79963 0.85962 1.90753 1.55357 1.44869 1.49228 1.21961 0.93696 1.02646 0.98094 0.85889 1.22671 0.98864 0.89318 1.02895 1.21160 0.89887 1.01583 1.07710 1.22775 0.99252 1.02466 0.92142 1.22625 0.95729 1.00191 0.96418 1.46127 1.69504 1.13862 1.09575 1.20294 0.76716 0.87218 0.83763 1.90698 1.48240 1.15718 1.84386 1.23538 1.03662 1.04856 0.98435 1.85380 1.86273 1.12905 0.98736 1.22829 1.51080 0.98120 0.96369 0.91006 1.24994 0.95111 0.95550 0.97953 1.70008 1.45483 1.13209 1.21593 0.86225 0.79328 0.80004 0.79945 1.19964 1.20815 1.19933 0.91880 0.91426 0.92539 0.90617 0.89765 0.91129 0.90884 0.76654 0.87535 0.87961 0.88528 0.88285 0.88385 0.88081 0.76941 0.89254 0.89284 0.92146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.48 37.16 0.35 -1.26 16 2 C 0.15 1.56 2.58 -67.93 -0.17 1.38 16 3 H 0.09 1.18 7.58 -51.93 -0.39 0.79 16 4 C -0.14 -0.95 4.87 -26.73 -0.13 -1.08 16 5 C 0.12 1.10 5.56 -4.04 -0.02 1.08 16 6 N -0.73 -5.72 5.56 -60.30 -0.33 -6.06 16 7 C 0.54 5.69 7.61 -10.99 -0.08 5.61 16 8 O -0.53 -8.09 16.24 5.55 0.09 -8.00 16 9 C -0.14 -1.09 6.19 -91.78 -0.57 -1.66 16 10 H 0.12 0.62 8.14 -51.93 -0.42 0.20 16 11 C -0.10 -0.69 10.24 -26.73 -0.27 -0.97 16 12 C -0.20 -1.71 5.05 -154.51 -0.78 -2.49 16 13 C -0.13 -0.86 10.53 -26.73 -0.28 -1.14 16 14 C -0.11 -1.00 10.16 -26.73 -0.27 -1.27 16 15 N -0.74 -9.40 4.53 -53.81 -0.24 -9.64 16 16 C 0.53 9.88 7.81 -10.99 -0.09 9.79 16 17 O -0.52 -11.63 15.52 5.56 0.09 -11.55 16 18 C -0.15 -3.15 6.16 36.01 0.22 -2.92 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 20 C -0.54 -15.47 9.50 30.94 0.29 -15.18 16 21 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.47 13.22 55.49 0.73 -25.74 16 24 Si 0.92 21.69 29.55 -169.99 -5.02 16.67 16 25 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.83 7.75 -51.93 -0.40 0.43 16 35 H 0.40 1.78 8.47 -40.82 -0.35 1.43 16 36 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.40 4.00 8.60 -40.82 -0.35 3.64 16 43 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 44 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 45 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 398.40 15.07 6.00 6.00 Total: -1.00 -37.54 398.40 -10.18 -47.72 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -7.38 Total: 2.53 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -1.90 Total: -8.10 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 0.16 Total: -41.43 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: 0.18 Total: -19.55 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.54 -10.18 -47.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078729633.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.525 kcal (2) G-P(sol) polarization free energy of solvation -37.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds